Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01514 Brassica carinata HOM05D005336 ORTHO05D006511 9.1e-75 283.5 143 100.0
A09p28450 Brassica napus HOM05D005336 ORTHO05D006511 7.9e-71 270.4 143 93.7
BraA09t38410Z Brassica rapa HOM05D005336 ORTHO05D006511 2.3e-70 268.9 143 94.4
C09p36020 Brassica napus HOM05D005336 ORTHO05D006511 3.9e-70 268.1 143 93.7
BolC9t56436H Brassica oleracea HOM05D005336 ORTHO05D006511 3.9e-70 268.1 143 93.7
Sp6g06720 Schrenkiella parvula HOM05D005336 ORTHO05D006511 1.4e-64 249.6 141 86.5
AL2G11840 Arabidopsis lyrata HOM05D005336 ORTHO05D006511 1.1e-56 223.4 147 77.6
AT1G63310 Arabidopsis thaliana HOM05D005336 ORTHO05D006511 1.1e-56 223.4 147 77.6
Sp2g01210 Schrenkiella parvula HOM05D005336 ORTHO05D006511 7.2e-56 220.7 146 77.4
CARHR047990 Cardamine hirsuta HOM05D005336 ORTHO05D006511 3.6e-55 218.4 148 77.7
BcaB07g31580 Brassica carinata HOM05D005336 ORTHO05D006511 4.7e-55 218.0 146 76.0
BcaB07g31399 Brassica carinata HOM05D005336 ORTHO05D006511 1.8e-54 216.1 146 77.4
Thhalv10023730m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 6.7e-54 214.2 152 75.0
A09p13620 Brassica napus HOM05D005336 ORTHO05D006511 3.3e-53 211.8 146 73.3
BraA09t37015Z Brassica rapa HOM05D005336 ORTHO05D006511 1.3e-52 209.9 146 72.6
BcaC04g22699 Brassica carinata HOM05D005336 ORTHO05D006511 2.8e-52 208.8 148 72.3
C09p16280 Brassica napus HOM05D005336 ORTHO05D006511 2.8e-52 208.8 148 72.3
BolC9t54538H Brassica oleracea HOM05D005336 ORTHO05D006511 2.8e-52 208.8 148 72.3
Carub.0002s0149 Capsella rubella HOM05D005336 ORTHO05D006511 1.1e-51 206.8 156 74.4
A09p15530 Brassica napus HOM05D005336 ORTHO05D006511 4.1e-51 204.9 148 75.0
Thhalv10029291m.g Eutrema salsugineum HOM05D005336 ORTHO05D006511 5.3e-51 204.5 144 75.0
BcaC04g22484 Brassica carinata HOM05D005336 ORTHO05D006511 2.0e-50 202.6 148 74.3
BolC9t54780H Brassica oleracea HOM05D005336 ORTHO05D006511 2.0e-50 202.6 148 74.3
BraA09t37193Z Brassica rapa HOM05D005336 ORTHO05D006511 3.5e-50 201.8 148 74.3
C09p18780 Brassica napus HOM05D005336 ORTHO05D006511 2.2e-49 199.1 148 73.6
Aa31sc221G90 Aethionema arabicum HOM05D005336 ORTHO05D006511 8.8e-46 187.2 149 67.8
THA.LOC104798383 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 2.1e-39 166.0 145 64.8
THA.LOC104798386 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 2.1e-39 166.0 145 64.8
THA.LOC104809289 Tarenaya hassleriana HOM05D005336 ORTHO05D006511 3.0e-38 162.2 142 64.8
Duzib068G0481 Durio zibethinus HOM05D005336 ORTHO05D006511 8.6e-25 117.5 141 46.1
Duzib205G0686 Durio zibethinus HOM05D005336 ORTHO05D006511 2.5e-24 115.9 138 47.1
Thecc.03G215000 Theobroma cacao HOM05D005336 ORTHO05D006511 3.1e-22 109.0 138 45.7
Medtr2g016680 Medicago truncatula HOM05D005336 ORTHO05D006511 2.0e-21 106.3 133 43.6
Phvul.007G247100 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 4.4e-21 105.1 139 43.9
Haze_09222 Corylus avellana HOM05D005336 ORTHO05D006511 5.8e-21 104.8 123 44.7
CiPaw.11G108200 Carya illinoinensis HOM05D005336 ORTHO05D006511 7.5e-21 104.4 133 42.1
VMungo0720G3070 Vigna mungo HOM05D005336 ORTHO05D006511 7.5e-21 104.4 132 42.4
Glyma.15G085000 Glycine max HOM05D005336 ORTHO05D006511 1.3e-20 103.6 131 42.0
Glyma.13G227300 Glycine max HOM05D005336 ORTHO05D006511 1.7e-20 103.2 129 42.6
Lj2P149T61 Lonicera japonica HOM05D005336 ORTHO05D006511 1.7e-20 103.2 137 41.6
Ca_00460_v3 Cicer arietinum L. HOM05D005336 ORTHO05D006511 2.2e-20 102.8 139 39.6
Cfa011882 Carpinus fangiana HOM05D005336 ORTHO05D006511 3.7e-20 102.1 122 44.3
Eucgr.E01097 Eucalyptus grandis HOM05D005336 ORTHO05D006511 4.9e-20 101.7 117 44.4
TPR.G4515 Trifolium pratense HOM05D005336 ORTHO05D006511 4.9e-20 101.7 116 43.1
Glyma.01G146800 Glycine max HOM05D005336 ORTHO05D006511 8.3e-20 100.9 117 42.7
Glyma.10G112800 Glycine max HOM05D005336 ORTHO05D006511 8.3e-20 100.9 117 42.7
Lj6g0026446 Lotus japonicus HOM05D005336 ORTHO05D006511 1.4e-19 100.1 123 42.3
Gorai.003G073000 Gossypium raimondii HOM05D005336 ORTHO05D006511 2.4e-19 99.4 144 41.7
MD06G1125100 Malus domestica HOM05D005336 ORTHO05D006511 2.4e-19 99.4 129 45.0
Dinv08689 Davidia involucrata HOM05D005336 ORTHO05D006511 3.2e-19 99.0 97 50.5
Duzib084G1128 Durio zibethinus HOM05D005336 ORTHO05D006511 3.2e-19 99.0 140 41.4
Gohir.A02G094800 Gossypium hirsutum HOM05D005336 ORTHO05D006511 3.2e-19 99.0 139 42.4
Gohir.D03G088700 Gossypium hirsutum HOM05D005336 ORTHO05D006511 3.2e-19 99.0 144 41.7
Manes.04G133300 Manihot esculenta HOM05D005336 ORTHO05D006511 4.1e-19 98.6 150 41.3
PGSC0003DMG400044996 Solanum tuberosum HOM05D005336 ORTHO05D006511 5.4e-19 98.2 141 41.8
Phvul.006G173850 Phaseolus vulgaris HOM05D005336 ORTHO05D006511 9.2e-19 97.4 134 39.6
QL12p003217 Quercus lobata HOM05D005336 ORTHO05D006511 9.2e-19 97.4 130 43.1
Sopen01g028460 Solanum pennellii HOM05D005336 ORTHO05D006511 9.2e-19 97.4 141 41.8
COL.COLO4_10851 Corchorus olitorius HOM05D005336 ORTHO05D006511 1.2e-18 97.1 142 43.0
ClCG07G008170 Citrullus lanatus HOM05D005336 ORTHO05D006511 2.1e-18 96.3 139 43.9
Psat1g195600 Pisum sativum HOM05D005336 ORTHO05D006511 2.1e-18 96.3 127 40.9
Solyc01g066860.3 Solanum lycopersicum HOM05D005336 ORTHO05D006511 2.1e-18 96.3 140 42.1
Solyc12g099590.1 Solanum lycopersicum HOM05D005336 ORTHO05D006511 2.1e-18 96.3 113 46.0
Sopen12g034260 Solanum pennellii HOM05D005336 ORTHO05D006511 2.1e-18 96.3 113 46.0
CsaV3_4G005910 Cucumis sativus L. HOM05D005336 ORTHO05D006511 2.7e-18 95.9 142 42.3
FAN04G3153 Fragaria x ananassa HOM05D005336 ORTHO05D006511 2.7e-18 95.9 130 40.8
Sed0023501 Sechium edule HOM05D005336 ORTHO05D006511 2.7e-18 95.9 113 45.1
Rhsim02G0255200 Rhododendron simsii HOM05D005336 ORTHO05D006511 3.5e-18 95.5 117 47.9
PGSC0003DMG400037636 Solanum tuberosum HOM05D005336 ORTHO05D006511 3.5e-18 95.5 113 45.1
Gohir.A12G243100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 4.6e-18 95.1 143 42.7
Lalb_Chr19g0129261 Lupinus albus HOM05D005336 ORTHO05D006511 4.6e-18 95.1 137 40.1
Nitab4.5_0000960g0060 Nicotiana tabacum HOM05D005336 ORTHO05D006511 4.6e-18 95.1 142 40.1
SGA_v2.0_scaffold99G29499 Striga asiatica HOM05D005336 ORTHO05D006511 6.0e-18 94.7 127 41.7
CAN.G129.24 Capsicum annuum HOM05D005336 ORTHO05D006511 7.8e-18 94.4 142 40.8
MD00G1118700 Malus domestica HOM05D005336 ORTHO05D006511 7.8e-18 94.4 129 44.2
FAN08G3085 Fragaria x ananassa HOM05D005336 ORTHO05D006511 1.0e-17 94.0 130 40.0
SGA_v2.0_scaffold71G23936 Striga asiatica HOM05D005336 ORTHO05D006511 1.0e-17 94.0 126 41.3
VMungo0540G0063 Vigna mungo HOM05D005336 ORTHO05D006511 1.0e-17 94.0 131 39.7
Gorai.008G261600 Gossypium raimondii HOM05D005336 ORTHO05D006511 1.3e-17 93.6 143 42.7
Nitab4.5_0008499g0040 Nicotiana tabacum HOM05D005336 ORTHO05D006511 1.3e-17 93.6 142 39.4
Dinv11470 Davidia involucrata HOM05D005336 ORTHO05D006511 2.3e-17 92.8 128 45.3
Gohir.D12G244100 Gossypium hirsutum HOM05D005336 ORTHO05D006511 3.0e-17 92.4 143 42.7
Oeu026757.1 Olea europaea HOM05D005336 ORTHO05D006511 3.0e-17 92.4 135 39.3
FvH4_5g10310 Fragaria vesca HOM05D005336 ORTHO05D006511 3.9e-17 92.0 130 40.0
FAN18G0874 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.9e-17 92.0 130 40.0
TWI15G0432 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 3.9e-17 92.0 136 39.7
MELO3C016357.2 Cucumis melo HOM05D005336 ORTHO05D006511 5.0e-17 91.7 142 40.8
TWI81G0214 Tripterygium wilfordii HOM05D005336 ORTHO05D006511 1.1e-16 90.5 125 44.8
AUR62001462 Chenopodium quinoa HOM05D005336 ORTHO05D006511 1.9e-16 89.7 161 36.0
Cc05_g01210 Coffea canephora HOM05D005336 ORTHO05D006511 1.9e-16 89.7 111 45.0
Peaxi162Scf00498g00079 Petunia axillaris HOM05D005336 ORTHO05D006511 1.9e-16 89.7 130 42.3
unitig_62.g23264 Utricularia gibba HOM05D005336 ORTHO05D006511 1.9e-16 89.7 122 42.6
Actinidia27276 Actinidia chinensis HOM05D005336 ORTHO05D006511 3.3e-16 89.0 114 41.2
FAN13G1264 Fragaria x ananassa HOM05D005336 ORTHO05D006511 3.3e-16 89.0 141 36.9
DCAR_023826 Daucus carota HOM05D005336 ORTHO05D006511 4.3e-16 88.6 137 38.7
Lsat_1_v5_gn_8_120821 Lactuca sativa HOM05D005336 ORTHO05D006511 7.3e-16 87.8 153 37.3
PGR031G1780 Punica granatum HOM05D005336 ORTHO05D006511 7.3e-16 87.8 125 41.6
MSTRG.13689 Avicennia marina HOM05D005336 ORTHO05D006511 9.5e-16 87.4 139 41.0
Ciclev10022546m.g Citrus clementina HOM05D005336 ORTHO05D006511 9.5e-16 87.4 142 37.3
Potri.011G149100 Populus trichocarpa HOM05D005336 ORTHO05D006511 2.1e-15 86.3 127 38.6
CANSAT21G1898 Cannabis sativa HOM05D005336 ORTHO05D006511 2.8e-15 85.9 156 37.2
SalBow1G3976 Salvia bowleyana HOM05D005336 ORTHO05D006511 2.8e-15 85.9 132 34.8
Prupe.5G135700 Prunus persica HOM05D005336 ORTHO05D006511 3.6e-15 85.5 137 38.7
CSS0006649 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 4.7e-15 85.1 84 52.4
CSS0030685 Camellia sinensis var. sinensis HOM05D005336 ORTHO05D006511 4.7e-15 85.1 129 38.8
RcHm_v2.0_Chr7g0187911 Rosa chinensis HOM05D005336 ORTHO05D006511 6.2e-15 84.7 144 38.9
Sabra11G0134200 Salix brachista HOM05D005336 ORTHO05D006511 6.2e-15 84.7 122 41.0
Lsat_1_v5_gn_4_127821 Lactuca sativa HOM05D005336 ORTHO05D006511 8.1e-15 84.3 126 39.7
Nitab4.5_0018124g0020 Nicotiana tabacum HOM05D005336 ORTHO05D006511 8.1e-15 84.3 130 40.0
Actinidia04156 Actinidia chinensis HOM05D005336 ORTHO05D006511 1.4e-14 83.6 91 44.0
Potri.001G452900 Populus trichocarpa HOM05D005336 ORTHO05D006511 1.4e-14 83.6 138 36.2
Nn3g18754 Nelumbo nucifera HOM05D005336 ORTHO05D006511 1.8e-14 83.2 145 36.6
MBI12_g05895_MAGBIO Magnolia biondii HOM05D005336 ORTHO05D006511 6.8e-14 81.3 129 40.3
PSO675G0589 Papaver somniferum HOM05D005336 ORTHO05D006511 6.8e-14 81.3 144 32.6
Sc12g0010690 Simmondsia chinensis HOM05D005336 ORTHO05D006511 6.8e-14 81.3 134 37.3
Ah.15g095260 Amaranthus hybridus HOM05D005336 ORTHO05D006511 8.9e-14 80.9 136 40.4
arahy.Tifrunner.gnm1.ann1.W1T8WI Arachis hypogaea HOM05D005336 ORTHO05D006511 1.2e-13 80.5 134 37.3
TAR375G0214 Trochodendron aralioides HOM05D005336 ORTHO05D006511 1.2e-13 80.5 144 36.8
AUR62009906 Chenopodium quinoa HOM05D005336 ORTHO05D006511 2.0e-13 79.7 146 34.2
ECA233G5147 Erigeron canadensis HOM05D005336 ORTHO05D006511 2.0e-13 79.7 120 40.0
Ah.08g216960 Amaranthus hybridus HOM05D005336 ORTHO05D006511 2.6e-13 79.3 120 36.7
SalBow5G4925 Salvia bowleyana HOM05D005336 ORTHO05D006511 2.6e-13 79.3 103 41.7
arahy.Tifrunner.gnm1.ann1.GG3QCC Arachis hypogaea HOM05D005336 ORTHO05D006511 4.4e-13 78.6 155 36.8
CiPaw.12G074100 Carya illinoinensis HOM05D005336 ORTHO05D006511 4.4e-13 78.6 119 37.0
Sabra16G0306000 Salix brachista HOM05D005336 ORTHO05D006511 7.5e-13 77.8 148 34.5
Cpa.g.sc62.61 Carica papaya HOM05D005336 ORTHO05D006511 2.2e-12 76.3 138 37.7
HanXRQChr05g0144281 Helianthus annuus HOM05D005336 ORTHO05D006511 9.2e-11 70.9 148 35.1
CDE11G0690 Ceratophyllum demersum HOM05D002676 ORTHO05D003194 1.6e-10 70.1 135 34.1
Oeu011890.1 Olea europaea HOM05D005336 ORTHO05D006511 3.5e-10 68.9 89 43.8
Actinidia22234 Actinidia chinensis HOM05D005336 ORTHO05D006511 4.6e-10 68.6 95 41.1
Glyma.02G159700 Glycine max HOM05D005336 ORTHO05D006511 3.0e-09 65.9 54 57.4
PGR042G3248 Punica granatum HOM05D005336 ORTHO05D006511 2.5e-08 62.8 110 35.5
Atru.chr9.1827 Acer truncatum HOM05D005336 ORTHO05D006511 9.5e-08 60.8 68 48.5
CDE09G0230 Ceratophyllum demersum HOM05D005336 ORTHO05D006511 1.6e-07 60.1 135 31.9
ATR0579G028 Amborella trichopoda HOM05D005336 ORTHO05D006511 2.8e-07 59.3 134 31.3
Lj9P602T20 Lonicera japonica HOM05D004242 ORTHO05D004349 1.8e-06 56.6 124 33.1
CsaV3_6G008950 Cucumis sativus L. HOM05D004242 ORTHO05D004349 3.1e-06 55.8 145 27.6
Nn1g02007 Nelumbo nucifera HOM05D005336 ORTHO05D006511 5.2e-06 55.1 64 42.2
Lsat_1_v5_gn_8_20301 Lactuca sativa HOM05D004242 ORTHO05D004349 8.9e-06 54.3 142 26.8
Lj8P558T23 Lonicera japonica HOM05D012621 ORTHO05D004349 8.9e-06 54.3 85 34.1


User provided reference genes

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