Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01503 Brassica carinata HOM05D004345 ORTHO05D005192 9.5e-217 756.5 373 100.0
C05p47630 Brassica napus HOM05D004345 ORTHO05D005192 3.8e-149 531.9 335 80.9
BraA05t21971Z Brassica rapa HOM05D004345 ORTHO05D005192 1.1e-148 530.4 335 80.3
A05p31330 Brassica napus HOM05D004345 ORTHO05D005192 3.2e-148 528.9 335 80.0
BolC5t33472H Brassica oleracea HOM05D004345 ORTHO05D005192 1.6e-147 526.6 335 80.6
Sp3g16450 Schrenkiella parvula HOM05D004345 ORTHO05D005192 2.0e-142 509.6 335 77.6
C05p47510 Brassica napus HOM05D004345 ORTHO05D005192 1.7e-136 490.0 338 75.4
Thhalv10020051m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 1.5e-129 466.8 335 69.9
AL3G31560 Arabidopsis lyrata HOM05D004345 ORTHO05D005192 1.5e-124 450.3 336 69.9
Thhalv10003730m.g Eutrema salsugineum HOM05D004345 ORTHO05D005192 3.6e-123 445.7 330 67.6
AT3G18310 Arabidopsis thaliana HOM05D004345 ORTHO05D005192 3.0e-122 442.6 336 69.6
Carub.0003s1810 Capsella rubella HOM05D004345 ORTHO05D005192 4.0e-122 442.2 336 68.5
Aa31LG8G3600 Aethionema arabicum HOM05D004345 ORTHO05D005192 7.3e-116 421.4 342 65.5
BcaC05g28685 Brassica carinata HOM05D004345 ORTHO05D005192 7.5e-113 411.4 277 77.3
CARHR093680 Cardamine hirsuta HOM05D004345 ORTHO05D005192 7.8e-110 401.4 341 64.8
BolC5t33532H Brassica oleracea HOM05D004345 ORTHO05D005192 3.2e-95 352.8 237 76.8
THA.LOC104803578 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 7.1e-79 298.5 343 49.0
Manes.14G172500 Manihot esculenta HOM05D004345 ORTHO05D005192 1.6e-75 287.3 353 46.2
Cfa020657 Carpinus fangiana HOM05D004345 ORTHO05D005192 9.0e-74 281.6 354 44.1
TWI60G1145 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 1.2e-73 281.2 355 42.8
CiPaw.12G040000 Carya illinoinensis HOM05D004345 ORTHO05D005192 3.4e-73 279.6 354 42.9
CiPaw.16G081600 Carya illinoinensis HOM05D004345 ORTHO05D005192 3.8e-72 276.2 353 43.3
Haze_18940 Corylus avellana HOM05D004345 ORTHO05D005192 1.9e-71 273.9 354 43.8
Sabra12G0028400 Salix brachista HOM05D004345 ORTHO05D005192 5.4e-71 272.3 353 43.3
Dinv36001 Davidia involucrata HOM05D004345 ORTHO05D005192 9.3e-71 271.6 350 43.4
Dinv35989 Davidia involucrata HOM05D004345 ORTHO05D004155 1.0e-69 268.1 350 43.4
Gohir.A11G329500 Gossypium hirsutum HOM05D004345 ORTHO05D005192 1.0e-69 268.1 352 42.6
Potri.012G041300 Populus trichocarpa HOM05D004345 ORTHO05D005192 8.7e-69 265.0 353 42.5
QL07p000534 Quercus lobata HOM05D004345 ORTHO05D005192 1.3e-67 261.2 354 42.9
MD04G1026400 Malus domestica HOM05D004345 ORTHO05D005192 2.1e-67 260.4 356 41.9
Gohir.D11G348700 Gossypium hirsutum HOM05D004345 ORTHO05D005192 6.2e-67 258.8 352 41.2
RcHm_v2.0_Chr7g0216331 Rosa chinensis HOM05D004345 ORTHO05D005192 6.2e-67 258.8 355 41.4
Gorai.007G379000 Gossypium raimondii HOM05D004345 ORTHO05D005192 8.1e-67 258.5 352 41.2
QL09p016785 Quercus lobata HOM05D004345 ORTHO05D005192 1.1e-66 258.1 354 42.1
QL04p019450 Quercus lobata HOM05D004345 ORTHO05D005192 1.8e-66 257.3 354 43.2
Prupe.2G050600 Prunus persica HOM05D004345 ORTHO05D005192 3.1e-66 256.5 353 41.4
Actinidia34666 Actinidia chinensis HOM05D004345 ORTHO05D005192 5.8e-65 252.3 351 41.9
FAN04G0730 Fragaria x ananassa HOM05D004345 ORTHO05D005192 7.6e-65 251.9 355 41.7
FvH4_5g25850 Fragaria vesca HOM05D004345 ORTHO05D005192 2.9e-64 250.0 355 40.8
FAN13G0999 Fragaria x ananassa HOM05D004345 ORTHO05D005192 2.9e-64 250.0 355 41.4
FAN18G0597 Fragaria x ananassa HOM05D004345 ORTHO05D005192 2.9e-64 250.0 355 40.8
CiPaw.12G046900 Carya illinoinensis HOM05D004345 ORTHO05D005192 3.8e-64 249.6 330 41.8
Nn1g01729 Nelumbo nucifera HOM05D004345 ORTHO05D005192 3.8e-64 249.6 353 40.8
CANSAT21G1743 Cannabis sativa HOM05D004345 ORTHO05D005192 1.4e-63 247.7 353 38.8
CSS0030547 Camellia sinensis var. sinensis HOM05D004345 ORTHO05D005192 3.2e-63 246.5 350 40.9
Ciclev10000213m.g Citrus clementina HOM05D004345 ORTHO05D005192 2.8e-59 233.4 361 38.8
Lj8C411T10 Lonicera japonica HOM05D004345 ORTHO05D005192 3.1e-58 229.9 350 40.3
Rhsim12G0029000 Rhododendron simsii HOM05D004345 ORTHO05D005192 6.9e-58 228.8 349 39.8
vmacro01076 Vaccinium macrocarpon HOM05D004345 ORTHO05D005192 2.0e-57 227.3 352 38.9
Lj5g0026700 Lotus japonicus HOM05D004345 ORTHO05D005192 8.4e-56 221.9 347 37.8
TWI31G0574 Tripterygium wilfordii HOM05D004345 ORTHO05D005192 1.1e-55 221.5 345 39.1
Glyma.02G144000 Glycine max HOM05D004345 ORTHO05D005192 1.9e-55 220.7 345 36.8
Glyma.10G030100 Glycine max HOM05D004345 ORTHO05D005192 9.3e-55 218.4 341 37.0
TPR.G10330 Trifolium pratense HOM05D004345 ORTHO05D005192 2.1e-54 217.2 347 36.0
Sed0027926 Sechium edule HOM05D004345 ORTHO05D005192 7.9e-54 215.3 355 37.5
VMungo1127G1998 Vigna mungo HOM05D004345 ORTHO05D005192 7.9e-54 215.3 345 36.5
CiPaw.12G047000 Carya illinoinensis HOM05D004345 ORTHO05D005192 1.3e-53 214.5 330 39.4
Duzib116G0224 Durio zibethinus HOM05D004345 ORTHO05D005192 1.3e-53 214.5 356 37.9
Ca_09724_v3 Cicer arietinum L. HOM05D004345 ORTHO05D005192 5.1e-53 212.6 347 36.0
Medtr3g069120 Medicago truncatula HOM05D004345 ORTHO05D005192 8.7e-53 211.8 344 36.6
Migut.N02797 Erythranthe guttata HOM05D004345 ORTHO05D005192 3.3e-52 209.9 354 37.6
Phvul.011G090800 Phaseolus vulgaris HOM05D004345 ORTHO05D005192 5.7e-52 209.1 346 36.4
Psat5g128760 Pisum sativum HOM05D004345 ORTHO05D005192 7.4e-52 208.8 343 34.4
MELO3C021732.2 Cucumis melo HOM05D004345 ORTHO05D005192 9.7e-52 208.4 353 36.0
MSTRG.24391 Avicennia marina HOM05D004345 ORTHO05D005192 2.2e-51 207.2 356 36.8
PGR044G2251 Punica granatum HOM05D004345 ORTHO05D005192 2.2e-51 207.2 354 37.0
CsaV3_1G046170 Cucumis sativus L. HOM05D004345 ORTHO05D005192 2.8e-51 206.8 353 35.7
VMungo1215G1527 Vigna mungo HOM05D004345 ORTHO05D005192 2.8e-51 206.8 345 35.7
A05p31320 Brassica napus HOM05D004345 ORTHO05D005192 4.8e-51 206.1 113 85.0
BraA05t21970Z Brassica rapa HOM05D004345 ORTHO05D005192 4.8e-51 206.1 113 85.0
HanXRQChr07g0196981 Helianthus annuus HOM05D004345 ORTHO05D005192 2.4e-50 203.8 338 34.3
Lalb_Chr21g0307461 Lupinus albus HOM05D004345 ORTHO05D005192 3.1e-50 203.4 350 36.0
EL10Ac9g22980 Beta vulgaris HOM05D000200 ORTHO05D001546 2.0e-49 200.7 346 37.3
DCAR_009432 Daucus carota HOM05D004345 ORTHO05D005192 2.0e-49 200.7 352 34.4
SalBow3G2318 Salvia bowleyana HOM05D004345 ORTHO05D005192 2.6e-49 200.3 351 35.3
Eucgr.C04176 Eucalyptus grandis HOM05D004345 ORTHO05D005192 1.0e-48 198.4 334 36.8
Lsat_1_v5_gn_8_70480 Lactuca sativa HOM05D004345 ORTHO05D005192 2.2e-48 197.2 346 34.7
AUR62032951 Chenopodium quinoa HOM05D004345 ORTHO05D005192 1.1e-47 194.9 350 36.0
Hund25524 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.1e-47 194.9 354 36.7
Hund17623 Selenicereus undatus HOM05D004345 ORTHO05D005192 1.4e-47 194.5 353 36.5
SHI21683 Sapria himalayana HOM05D004345 ORTHO05D005192 2.7e-46 190.3 352 35.5
Thecc.05G018000 Theobroma cacao HOM05D004345 ORTHO05D005192 6.1e-46 189.1 307 36.5
Ah.01g012750 Amaranthus hybridus HOM05D004345 ORTHO05D005192 1.5e-44 184.5 350 35.4
ECA234G4090 Erigeron canadensis HOM05D004345 ORTHO05D005192 1.9e-44 184.1 346 34.7
QL07p001298 Quercus lobata HOM05D004345 ORTHO05D005192 2.5e-44 183.7 248 43.5
unitig_744.g24116 Utricularia gibba HOM05D004345 ORTHO05D005192 1.7e-43 181.0 338 34.9
MBI07_g11743_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 8.2e-43 178.7 370 33.2
ECA238G4368 Erigeron canadensis HOM05D004345 ORTHO05D005192 2.4e-42 177.2 349 32.7
Cpa.g.sc4881.1 Carica papaya HOM05D004345 ORTHO05D005192 1.7e-40 171.0 342 34.2
Eucgr.K02289 Eucalyptus grandis HOM05D004345 ORTHO05D005192 5.0e-40 169.5 351 35.9
Cc07_g15690 Coffea canephora HOM05D004345 ORTHO05D005192 1.9e-39 167.5 337 33.8
Ah.03g148550 Amaranthus hybridus HOM05D004345 ORTHO05D005192 4.2e-39 166.4 327 34.6
Aqoxy4G03088 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 9.4e-39 165.2 353 33.4
COL.COLO4_14552 Corchorus olitorius HOM05D004345 ORTHO05D005192 1.2e-38 164.9 239 43.1
BcaB06g25876 Brassica carinata HOM05D004345 ORTHO05D005192 3.6e-38 163.3 111 73.9
Cpa.g.sc3060.1 Carica papaya HOM05D004345 ORTHO05D005192 3.6e-38 163.3 207 46.9
CDE12G0342 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.8e-37 161.0 350 32.3
Aqoxy4G01527 Aquilegia oxysepala HOM05D004345 ORTHO05D005192 3.3e-36 156.8 354 31.1
Nitab4.5_0001423g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 2.2e-35 154.1 338 33.4
Nitab4.5_0008354g0010 Nicotiana tabacum HOM05D004345 ORTHO05D005192 3.1e-34 150.2 338 32.8
Sopen01g042020 Solanum pennellii HOM05D004345 ORTHO05D005192 5.3e-34 149.4 338 32.0
Peaxi162Scf00434g00066 Petunia axillaris HOM05D004345 ORTHO05D005192 2.0e-33 147.5 339 31.9
Dinv39346 Davidia involucrata HOM05D004345 ORTHO05D005192 1.0e-32 145.2 322 33.9
Solyc01g098450.4 Solanum lycopersicum HOM05D004345 ORTHO05D005192 1.0e-32 145.2 338 32.0
PSO210G0907 Papaver somniferum HOM05D004345 ORTHO05D005192 1.2e-30 138.3 351 31.6
CDE09G0455 Ceratophyllum demersum HOM05D004345 ORTHO05D005192 1.5e-28 131.3 333 29.1
Nitab4.5_0001903g0100 Nicotiana tabacum HOM05D004345 ORTHO05D005192 1.7e-27 127.9 326 30.7
HPP92_000827 Vanilla planifolia HOM05D004345 ORTHO05D005192 1.8e-26 124.4 344 31.1
MBI07_g44810_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 4.1e-26 123.2 270 33.7
PSO210G0382 Papaver somniferum HOM05D004345 ORTHO05D005192 1.6e-25 121.3 320 31.2
Zm00001eb399070 Zea mays HOM05D004345 ORTHO05D005192 2.9e-24 117.1 341 28.7
Os03g0240400 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 5.0e-24 116.3 330 31.8
THA.LOC104807021 Tarenaya hassleriana HOM05D004345 ORTHO05D005192 6.1e-22 109.4 87 63.2
Os09g0104700 Oryza sativa ssp. japonica HOM05D004345 ORTHO05D005192 2.2e-19 100.9 335 28.7
ATR0691G134 Amborella trichopoda HOM05D004345 ORTHO05D005192 8.2e-19 99.0 359 26.7
ATR1192G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 7.0e-18 95.9 347 27.4
ATR0446G001 Amborella trichopoda HOM05D004345 ORTHO05D005192 1.2e-17 95.1 362 27.9
PSO384G0273 Papaver somniferum HOM05D004345 ORTHO05D005192 6.5e-16 89.4 311 28.0
Oeu031657.1 Olea europaea HOM05D004345 ORTHO05D005192 2.5e-15 87.4 131 33.6
ATR0661G336 Amborella trichopoda HOM05D004345 ORTHO05D005192 3.2e-15 87.0 321 27.4
ATR0560G006 Amborella trichopoda HOM05D004345 ORTHO05D005192 8.8e-13 79.0 209 31.6
PSO407G0063 Papaver somniferum HOM05D004345 ORTHO05D005192 8.8e-13 79.0 147 36.1
TAR383G0351 Trochodendron aralioides HOM05D004345 ORTHO05D005192 4.8e-11 73.2 109 33.9
MBI07_g37626_MAGBIO Magnolia biondii HOM05D004345 ORTHO05D005192 8.3e-11 72.4 129 36.4
SEGI_03816 Sequoiadendron giganteum HOM05D004345 ORTHO05D005192 4.5e-09 66.6 388 22.2
C05p47540 Brassica napus HOM05D004345 ORTHO05D005192 1.9e-07 61.2 36 80.6


User provided reference genes

Program Settings