Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01449 Brassica carinata HOM05D003874 ORTHO05D004545 2.4e-139 498.8 252 100.0
A09p28850 Brassica napus HOM05D003874 ORTHO05D004545 2.5e-83 312.8 279 65.9
BcaC04g21012 Brassica carinata HOM05D003874 ORTHO05D004545 7.9e-82 307.8 284 66.2
C09p36670 Brassica napus HOM05D003874 ORTHO05D004545 7.9e-82 307.8 284 66.2
BolC9t56498H Brassica oleracea HOM05D003874 ORTHO05D004545 7.9e-82 307.8 284 66.2
BraA09t38447Z Brassica rapa HOM05D003874 ORTHO05D004545 1.3e-79 300.4 274 65.0
BcaB05g23922 Brassica carinata HOM05D003874 ORTHO05D004545 5.0e-68 261.9 297 54.9
A02p26740 Brassica napus HOM05D003874 ORTHO05D004545 1.7e-63 246.9 304 53.3
BraA02t07678Z Brassica rapa HOM05D003874 ORTHO05D004545 1.7e-63 246.9 304 53.3
Thhalv10028826m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 3.7e-63 245.7 320 50.6
Sp6g07450 Schrenkiella parvula HOM05D003874 ORTHO05D004545 6.3e-63 245.0 329 50.8
Carub.0006s2864 Capsella rubella HOM05D003874 ORTHO05D004545 2.6e-61 239.6 299 53.5
AT4G10080 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.9e-60 236.1 327 48.9
AL6G43860 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.1e-59 234.2 299 50.8
BcaC03g16428 Brassica carinata HOM05D003874 ORTHO05D004545 1.2e-58 230.7 338 47.9
C02p42530 Brassica napus HOM05D003874 ORTHO05D004545 1.2e-58 230.7 338 47.9
BolC2t10292H Brassica oleracea HOM05D003874 ORTHO05D004545 6.7e-57 224.9 338 47.0
CARHR261100 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.1e-54 217.6 347 44.4
Aa31LG9G11920 Aethionema arabicum HOM05D003874 ORTHO05D004545 1.4e-49 200.7 361 39.9
THA.LOC104813368 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 8.3e-47 191.4 287 46.0
THA.LOC104806752 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 1.5e-43 180.6 147 61.9
Nitab4.5_0000980g0270 Nicotiana tabacum HOM05D003874 ORTHO05D004545 7.7e-37 158.3 275 40.0
Nitab4.5_0000283g0160 Nicotiana tabacum HOM05D003874 ORTHO05D004545 5.0e-36 155.6 275 38.2
QL09p001799 Quercus lobata HOM05D003874 ORTHO05D004545 1.5e-35 154.1 163 51.5
Cfa008075 Carpinus fangiana HOM05D003874 ORTHO05D004545 1.9e-35 153.7 171 50.9
vmacro00941 Vaccinium macrocarpon HOM05D003874 ORTHO05D004545 2.5e-35 153.3 139 56.8
CSS0025181 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 4.2e-35 152.5 162 52.5
Manes.02G201800 Manihot esculenta HOM05D003874 ORTHO05D004545 1.2e-34 151.0 158 51.3
Cpa.g.sc21.87 Carica papaya HOM05D003874 ORTHO05D004545 2.1e-34 150.2 125 58.4
Migut.C01383 Erythranthe guttata HOM05D003874 ORTHO05D004545 4.7e-34 149.1 171 49.7
RcHm_v2.0_Chr6g0251151 Rosa chinensis HOM05D003874 ORTHO05D004545 4.7e-34 149.1 176 46.0
MSTRG.1601 Avicennia marina HOM05D003874 ORTHO05D004545 6.1e-34 148.7 138 55.1
Potri.019G071300 Populus trichocarpa HOM05D003874 ORTHO05D004545 6.1e-34 148.7 161 50.9
ECA232G3741 Erigeron canadensis HOM05D003874 ORTHO05D004545 2.3e-33 146.7 281 36.3
FAN24G1984 Fragaria x ananassa HOM05D003874 ORTHO05D004545 2.3e-33 146.7 161 50.3
CSS0015095 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 3.0e-33 146.4 283 37.8
Potri.013G099200 Populus trichocarpa HOM05D003874 ORTHO05D004545 3.0e-33 146.4 162 51.9
FvH4_2g00770 Fragaria vesca HOM05D003874 ORTHO05D004545 4.0e-33 146.0 161 50.3
Rhsim12G0002900 Rhododendron simsii HOM05D003874 ORTHO05D004545 4.0e-33 146.0 154 53.2
Atru.chr13.2495 Acer truncatum HOM05D003874 ORTHO05D004545 5.2e-33 145.6 304 35.9
Atru.chr13.2507 Acer truncatum HOM05D003874 ORTHO05D004545 5.2e-33 145.6 304 35.9
FAN20G2080 Fragaria x ananassa HOM05D003874 ORTHO05D004545 5.2e-33 145.6 176 46.6
Sabra13G0085100 Salix brachista HOM05D003874 ORTHO05D004545 5.2e-33 145.6 162 51.9
Manes.18G116100 Manihot esculenta HOM05D003874 ORTHO05D004545 6.8e-33 145.2 236 39.8
COL.COLO4_25146 Corchorus olitorius HOM05D003874 ORTHO05D004545 1.2e-32 144.4 145 51.7
ClCG08G000760 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.5e-32 144.1 195 41.5
Peaxi162Scf00078g00734 Petunia axillaris HOM05D003874 ORTHO05D004545 2.0e-32 143.7 115 60.9
GSVIVG01036285001 Vitis vinifera HOM05D003874 ORTHO05D004545 2.0e-32 143.7 133 56.4
PGSC0003DMG400008421 Solanum tuberosum HOM05D003874 ORTHO05D004545 3.4e-32 142.9 136 55.9
Ciclev10020185m.g Citrus clementina HOM05D003874 ORTHO05D004545 4.4e-32 142.5 156 50.0
Actinidia03528 Actinidia chinensis HOM05D003874 ORTHO05D004545 5.7e-32 142.1 126 57.1
CSS0009242 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 5.7e-32 142.1 283 37.1
FAN27G1922 Fragaria x ananassa HOM05D003874 ORTHO05D004545 5.7e-32 142.1 176 45.5
MELO3C022165.2 Cucumis melo HOM05D003874 ORTHO05D004545 7.5e-32 141.7 198 41.9
SGA_v2.0_scaffold24G10651 Striga asiatica HOM05D003874 ORTHO05D004545 7.5e-32 141.7 179 48.0
Actinidia29373 Actinidia chinensis HOM05D003874 ORTHO05D004545 9.8e-32 141.4 150 51.3
Nitab4.5_0000554g0030 Nicotiana tabacum HOM05D003874 ORTHO05D004545 9.8e-32 141.4 141 53.2
CANSAT21G0097 Cannabis sativa HOM05D003874 ORTHO05D004545 1.3e-31 141.0 308 31.5
HanXRQChr15g0484691 Helianthus annuus HOM05D003874 ORTHO05D004545 1.3e-31 141.0 259 38.2
Nitab4.5_0000213g0070 Nicotiana tabacum HOM05D003874 ORTHO05D004545 1.7e-31 140.6 137 54.7
Dinv22112 Davidia involucrata HOM05D003874 ORTHO05D004545 2.2e-31 140.2 320 34.4
Lj7A419T39 Lonicera japonica HOM05D003874 ORTHO05D004545 2.2e-31 140.2 197 41.6
CsaV3_5G039860 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.8e-31 139.8 176 44.9
MD10G1004400 Malus domestica HOM05D003874 ORTHO05D004545 2.8e-31 139.8 175 46.3
Duzib268G0037 Durio zibethinus HOM05D003874 ORTHO05D004545 3.7e-31 139.4 170 48.2
Sed0021145 Sechium edule HOM05D003874 ORTHO05D004545 3.7e-31 139.4 159 47.8
Haze_13960 Corylus avellana HOM05D003874 ORTHO05D004545 6.3e-31 138.7 201 43.8
PGR042G0135 Punica granatum HOM05D003874 ORTHO05D004545 6.3e-31 138.7 163 47.2
MD05G1003400 Malus domestica HOM05D003874 ORTHO05D004545 1.4e-30 137.5 163 47.2
Prupe.8G006800 Prunus persica HOM05D003874 ORTHO05D004545 1.4e-30 137.5 105 61.9
SGA_v2.0_scaffold118G32614 Striga asiatica HOM05D003874 ORTHO05D004545 1.4e-30 137.5 307 35.2
Aqoxy6G00117 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.8e-30 137.1 292 33.6
CARHR261120 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.8e-30 137.1 234 43.2
Dinv37410 Davidia involucrata HOM05D003874 ORTHO05D004545 1.8e-30 137.1 319 34.8
TWI18G0284 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 1.8e-30 137.1 171 46.2
THA.LOC104808737 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 4.1e-30 136.0 123 54.5
Thecc.08G178800 Theobroma cacao HOM05D003874 ORTHO05D004545 7.0e-30 135.2 361 31.3
Gohir.D13G118600 Gossypium hirsutum HOM05D003874 ORTHO05D004545 9.2e-30 134.8 360 31.1
SalBow7G3598 Salvia bowleyana HOM05D003874 ORTHO05D004545 9.2e-30 134.8 266 39.1
EL10Ac1g01274 Beta vulgaris HOM05D003874 ORTHO05D004545 1.2e-29 134.4 287 36.2
Cc10_g08580 Coffea canephora HOM05D003874 ORTHO05D004545 1.2e-29 134.4 188 42.0
ClCG05G024400 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.6e-29 134.0 204 39.7
Gorai.013G133000 Gossypium raimondii HOM05D003874 ORTHO05D004545 2.0e-29 133.7 360 31.4
TWI75G0660 Tripterygium wilfordii HOM05D003874 ORTHO05D004545 2.0e-29 133.7 175 46.3
TAR376G0450 Trochodendron aralioides HOM05D003874 ORTHO05D004545 2.7e-29 133.3 149 47.7
Sed0026799 Sechium edule HOM05D003874 ORTHO05D004545 3.5e-29 132.9 207 40.1
CsaV3_5G032550 Cucumis sativus L. HOM05D003874 ORTHO05D004545 7.8e-29 131.7 200 42.5
Gohir.A13G115500 Gossypium hirsutum HOM05D003874 ORTHO05D004545 7.8e-29 131.7 187 43.9
CiPaw.03G014100 Carya illinoinensis HOM05D003874 ORTHO05D004545 1.0e-28 131.3 169 47.3
MBI03_g29107_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.0e-28 131.3 110 55.5
SalBow6G4185 Salvia bowleyana HOM05D003874 ORTHO05D004545 1.3e-28 131.0 291 37.8
Eucgr.F02945 Eucalyptus grandis HOM05D003874 ORTHO05D004545 1.7e-28 130.6 213 41.3
TAR628G1590 Trochodendron aralioides HOM05D003874 ORTHO05D004545 1.7e-28 130.6 162 45.7
Lsat_1_v5_gn_9_75521 Lactuca sativa HOM05D003874 ORTHO05D004545 2.3e-28 130.2 304 35.2
unitig_37.g13076 Utricularia gibba HOM05D003874 ORTHO05D004545 2.3e-28 130.2 134 51.5
AUR62038535 Chenopodium quinoa HOM05D003874 ORTHO05D004545 2.9e-28 129.8 256 37.5
PSO017G0683 Papaver somniferum HOM05D003874 ORTHO05D004545 2.9e-28 129.8 135 53.3
Aa31LG9G4130 Aethionema arabicum HOM05D003874 ORTHO05D004545 5.0e-28 129.0 149 43.6
DCAR_003510 Daucus carota HOM05D003874 ORTHO05D004545 5.0e-28 129.0 124 48.4
SalBow1G3841 Salvia bowleyana HOM05D003874 ORTHO05D004545 8.6e-28 128.3 292 36.3
Aqoxy5G01942 Aquilegia oxysepala HOM05D003874 ORTHO05D004545 1.1e-27 127.9 172 40.1
Duzib177G0949 Durio zibethinus HOM05D003874 ORTHO05D004545 1.5e-27 127.5 141 48.2
ClCG11G008410 Citrullus lanatus HOM05D003874 ORTHO05D004545 1.9e-27 127.1 133 48.1
CiPaw.04G009100 Carya illinoinensis HOM05D003874 ORTHO05D004545 4.3e-27 125.9 169 46.7
AUR62013384 Chenopodium quinoa HOM05D003874 ORTHO05D004545 5.6e-27 125.6 254 37.0
Nn5g27385 Nelumbo nucifera HOM05D003874 ORTHO05D004545 7.3e-27 125.2 197 42.1
MELO3C012083.2 Cucumis melo HOM05D003874 ORTHO05D004545 9.5e-27 124.8 260 35.8
PSO170G4959 Papaver somniferum HOM05D003874 ORTHO05D004545 1.2e-26 124.4 218 40.8
Hund16917 Selenicereus undatus HOM05D003874 ORTHO05D004545 1.2e-26 124.4 113 53.1
AT4G13530 Arabidopsis thaliana HOM05D003874 ORTHO05D004545 2.1e-26 123.6 280 32.9
MSTRG.24132 Avicennia marina HOM05D003874 ORTHO05D004545 2.3e-25 120.2 169 42.6
Ah.05g170390 Amaranthus hybridus HOM05D003874 ORTHO05D004545 4.0e-25 119.4 278 34.5
Thhalv10025948m.g Eutrema salsugineum HOM05D003874 ORTHO05D004545 5.2e-25 119.0 219 38.4
Sabra19G0083400 Salix brachista HOM05D003637 ORTHO05D004175 6.8e-25 118.6 186 38.2
AL7G43110 Arabidopsis lyrata HOM05D003874 ORTHO05D004545 1.2e-24 117.9 273 32.6
Carub.0007s2901 Capsella rubella HOM05D003874 ORTHO05D004545 1.2e-24 117.9 290 31.0
MBI06_g14322_MAGBIO Magnolia biondii HOM05D003874 ORTHO05D004545 1.5e-24 117.5 171 43.9
Oeu028635.2 Olea europaea HOM05D003874 ORTHO05D004545 1.5e-24 117.5 123 50.4
CsaV3_2G033240 Cucumis sativus L. HOM05D003874 ORTHO05D004545 2.6e-24 116.7 150 40.0
THA.LOC104821626 Tarenaya hassleriana HOM05D003874 ORTHO05D004545 2.6e-24 116.7 143 47.6
CDE08G0633 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 3.4e-24 116.3 117 47.0
Oeu046029.1 Olea europaea HOM05D003874 ORTHO05D004545 3.4e-24 116.3 109 53.2
CAN.G761.11 Capsicum annuum HOM05D003874 ORTHO05D004545 7.5e-24 115.2 264 32.2
DCAR_014068 Daucus carota HOM05D003874 ORTHO05D004545 7.5e-24 115.2 127 46.5
CAN.G761.10 Capsicum annuum HOM05D003874 ORTHO05D004545 9.8e-24 114.8 264 32.2
CARHR219160 Cardamine hirsuta HOM05D003874 ORTHO05D004545 1.7e-23 114.0 269 34.6
CDE02G0043 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 2.9e-23 113.2 136 42.6
MSTRG.22473 Avicennia marina HOM05D003874 ORTHO05D004545 3.2e-22 109.8 108 55.6
Medtr3g006350 Medicago truncatula HOM05D003874 ORTHO05D004545 5.4e-22 109.0 260 35.0
PGSC0003DMG400012413 Solanum tuberosum HOM05D003874 ORTHO05D004545 1.2e-21 107.8 111 51.4
Lj3g0022236 Lotus japonicus HOM05D003874 ORTHO05D004545 2.0e-21 107.1 113 52.2
Lalb_Chr15g0080071 Lupinus albus HOM05D003874 ORTHO05D004545 2.7e-21 106.7 106 52.8
A05p16560 Brassica napus HOM05D003874 ORTHO05D004545 3.5e-21 106.3 111 53.2
BraA05t20564Z Brassica rapa HOM05D003874 ORTHO05D004545 3.5e-21 106.3 111 53.2
Solyc07g063050.1 Solanum lycopersicum HOM05D003874 ORTHO05D004545 3.5e-21 106.3 103 53.4
Sopen07g031240 Solanum pennellii HOM05D003874 ORTHO05D004545 3.5e-21 106.3 103 53.4
C06p17230 Brassica napus HOM05D003874 ORTHO05D004545 4.6e-21 105.9 140 47.1
BolC6t36923H Brassica oleracea HOM05D003874 ORTHO05D004545 4.6e-21 105.9 140 47.1
Ca_27532_v3 Cicer arietinum L. HOM05D003874 ORTHO05D004545 7.8e-21 105.1 271 36.5
Psat5g232160 Pisum sativum HOM05D003874 ORTHO05D004545 7.8e-21 105.1 262 33.2
BcaC08g44301 Brassica carinata HOM05D003874 ORTHO05D004545 1.7e-20 104.0 140 46.4
arahy.Tifrunner.gnm1.ann1.GHV9B3 Arachis hypogaea HOM05D003874 ORTHO05D004545 6.6e-20 102.1 258 32.6
arahy.Tifrunner.gnm1.ann1.N113B0 Arachis hypogaea HOM05D003874 ORTHO05D004545 1.5e-19 100.9 258 32.2
Sp7g11130 Schrenkiella parvula HOM05D003874 ORTHO05D004545 1.9e-19 100.5 289 32.9
Zm00001eb182290 Zea mays HOM05D003874 ORTHO05D004545 1.9e-19 100.5 143 39.2
Glyma.06G323500 Glycine max HOM05D003874 ORTHO05D004545 1.6e-18 97.4 177 36.7
TPR.G25536 Trifolium pratense HOM05D003874 ORTHO05D004545 2.1e-18 97.1 270 35.2
Os02g0558500 Oryza sativa ssp. japonica HOM05D003874 ORTHO05D004545 2.8e-18 96.7 105 41.9
Sabra13G0083800 Salix brachista HOM05D003874 ORTHO05D004545 2.8e-18 96.7 130 44.6
CDE07G0664 Ceratophyllum demersum HOM05D003874 ORTHO05D004545 4.7e-18 95.9 107 45.8
Sopen11g018310 Solanum pennellii HOM05D003874 ORTHO05D004545 1.1e-17 94.7 105 48.6
CSS0021765 Camellia sinensis var. sinensis HOM05D003874 ORTHO05D004545 1.8e-17 94.0 73 68.5
Solyc11g040300.2 Solanum lycopersicum HOM05D003874 ORTHO05D004545 6.8e-17 92.0 73 67.1
HPP92_005639 Vanilla planifolia HOM05D000572 ORTHO05D000840 4.4e-16 89.4 127 37.0
Oeu013912.1 Olea europaea HOM05D003874 ORTHO05D004545 2.9e-15 86.7 425 23.5
Glyma.04G111000 Glycine max HOM05D003874 ORTHO05D004545 8.3e-15 85.1 111 45.0
Zm00001eb366050 Zea mays HOM05D003874 ORTHO05D004545 8.3e-15 85.1 99 43.4
Phvul.005G002800 Phaseolus vulgaris HOM05D003874 ORTHO05D004545 1.4e-14 84.3 119 42.0
VMungo1080G0642 Vigna mungo HOM05D003874 ORTHO05D004545 1.4e-14 84.3 137 39.4
Sc21g0007200 Simmondsia chinensis HOM05D003874 ORTHO05D004545 1.9e-14 84.0 105 41.9
MELO3C008094.2 Cucumis melo HOM05D003874 ORTHO05D004545 4.1e-14 82.8 91 39.6
Hma1.2p1_0016F.1_g010740 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 9.2e-14 81.6 92 43.5
Hma1.2p1_0016F.1_g010745 Hydrangea macrophylla HOM05D003874 ORTHO05D004545 9.2e-14 81.6 92 43.5
SEGI_28614 Sequoiadendron giganteum HOM05D003874 ORTHO05D004545 9.2e-14 81.6 117 38.5
HPP92_009210 Vanilla planifolia HOM05D003874 ORTHO05D004545 7.3e-11 72.0 139 34.5
Zm00001eb145550 Zea mays HOM05D003874 ORTHO05D004545 9.5e-11 71.6 132 36.4
BcaB05g25162 Brassica carinata HOM05D003874 ORTHO05D004545 3.4e-08 63.2 272 29.8
Nn4g22326 Nelumbo nucifera HOM05D003874 ORTHO05D004545 2.9e-07 60.1 43 74.4
Mapoly0022s0094 Marchantia polymorpha HOM05D001925 ORTHO05D004257 1.4e-06 57.8 83 37.3
BcaC07g37962 Brassica carinata HOM05D003874 ORTHO05D004545 7.1e-06 55.5 102 38.2


User provided reference genes

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