Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01441 Brassica carinata HOM05D001447 ORTHO05D005923 4.7e-122 441.4 258 100.0
BcaC03g16136 Brassica carinata HOM05D015278 ORTHO05D032781 6.3e-50 201.8 234 63.2
Sp3g18100 Schrenkiella parvula HOM05D001447 ORTHO05D005923 1.8e-49 200.3 213 59.2
BcaB06g26078 Brassica carinata HOM05D001447 ORTHO05D005923 1.2e-45 187.6 224 58.5
Thhalv10021184m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 1.2e-45 187.6 209 55.0
A05p29010 Brassica napus HOM05D001447 ORTHO05D005923 3.0e-44 183.0 204 56.4
BraA05t21783Z Brassica rapa HOM05D001447 ORTHO05D005923 3.0e-44 183.0 204 56.4
C05p44410 Brassica napus HOM05D001447 ORTHO05D005923 3.9e-44 182.6 204 56.4
BolC5t33164H Brassica oleracea HOM05D001447 ORTHO05D005923 3.9e-44 182.6 204 56.4
BcaC05g28363 Brassica carinata HOM05D001447 ORTHO05D005923 9.7e-43 177.9 204 55.9
AL3G33750 Arabidopsis lyrata HOM05D001447 ORTHO05D005923 1.8e-41 173.7 207 51.2
AT3G20070 Arabidopsis thaliana HOM05D001447 ORTHO05D005923 1.5e-40 170.6 208 50.0
Carub.0003s1999 Capsella rubella HOM05D001447 ORTHO05D005923 5.9e-40 168.7 211 51.7
CARHR095600 Cardamine hirsuta HOM05D001447 ORTHO05D005923 1.7e-39 167.2 212 50.5
BolC4t26880H Brassica oleracea HOM05D001447 ORTHO05D005923 2.9e-39 166.4 219 52.1
Aa31LG8G6860 Aethionema arabicum HOM05D001447 ORTHO05D005923 1.0e-36 157.9 217 47.0
BcaB02g07197 Brassica carinata HOM05D001447 ORTHO05D005923 2.1e-29 133.7 140 57.1
BcaB06g26464 Brassica carinata HOM05D001447 ORTHO05D005923 2.1e-29 133.7 169 52.1
THA.LOC104811411 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 2.7e-29 133.3 205 43.4
THA.LOC104809267 Tarenaya hassleriana HOM05D001447 ORTHO05D005923 6.1e-29 132.1 213 46.5
Duzib168G0657 Durio zibethinus HOM05D001447 ORTHO05D005923 1.6e-24 117.5 222 37.4
BcaC01g05497 Brassica carinata HOM05D001447 ORTHO05D005923 2.0e-24 117.1 117 65.0
BcaC02g08532 Brassica carinata HOM05D001447 ORTHO05D005923 2.6e-24 116.7 117 67.5
Dinv36208 Davidia involucrata HOM05D001447 ORTHO05D005923 3.5e-24 116.3 232 35.3
Cfa009826 Carpinus fangiana HOM05D001447 ORTHO05D008204 1.3e-23 114.4 224 38.4
COL.COLO4_36479 Corchorus olitorius HOM05D001447 ORTHO05D005923 1.3e-23 114.4 210 39.0
Gohir.D09G108100 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.7e-23 114.0 224 35.7
Gorai.006G125800 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.7e-23 114.0 224 35.7
Thecc.09G241000 Theobroma cacao HOM05D001447 ORTHO05D005923 3.8e-23 112.8 222 36.9
Gohir.A09G111500 Gossypium hirsutum HOM05D001447 ORTHO05D005923 1.1e-22 111.3 224 35.3
ClCG02G023020 Citrullus lanatus HOM05D001447 ORTHO05D008204 3.2e-22 109.8 217 34.6
TAR623G1061 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.2e-22 109.4 229 35.8
Oeu038401.1 Olea europaea HOM05D001447 ORTHO05D005923 5.5e-22 109.0 231 35.1
Potri.009G049500 Populus trichocarpa HOM05D001447 ORTHO05D005923 5.5e-22 109.0 231 35.9
C02p39380 Brassica napus HOM05D015278 ORTHO05D032781 2.1e-21 107.1 128 54.7
BolC2t09948H Brassica oleracea HOM05D015278 ORTHO05D032781 2.1e-21 107.1 128 54.7
CiPaw.13G153600 Carya illinoinensis HOM05D001447 ORTHO05D005923 2.1e-21 107.1 220 36.4
Gohir.A05G070400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 2.1e-21 107.1 88 59.1
Haze_23187 Corylus avellana HOM05D001447 ORTHO05D005923 6.1e-21 105.5 245 34.3
Glyma.10G069400 Glycine max HOM05D001447 ORTHO05D005923 1.0e-20 104.8 218 34.9
TAR369G0010 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.0e-20 104.8 227 33.0
TAR623G0977 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.0e-20 104.8 90 58.9
Gorai.009G074300 Gossypium raimondii HOM05D001447 ORTHO05D005923 1.4e-20 104.4 88 58.0
GSVIVG01031554001 Vitis vinifera HOM05D001447 ORTHO05D005923 1.4e-20 104.4 236 36.4
TPR.G26927 Trifolium pratense HOM05D001447 ORTHO05D005923 1.8e-20 104.0 214 31.8
TWI14G1124 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 4.0e-20 102.8 89 57.3
MELO3C014572.2 Cucumis melo HOM05D001447 ORTHO05D005923 5.2e-20 102.4 219 34.2
Gohir.D05G073400 Gossypium hirsutum HOM05D001447 ORTHO05D005923 5.2e-20 102.4 204 37.3
RcHm_v2.0_Chr5g0051191 Rosa chinensis HOM05D001447 ORTHO05D005923 6.7e-20 102.1 231 34.2
Glyma.13G152406 Glycine max HOM05D001447 ORTHO05D005923 1.1e-19 101.3 210 37.1
MSTRG.11555 Avicennia marina HOM05D001447 ORTHO05D005923 1.5e-19 100.9 217 30.4
CsaV3_6G039120 Cucumis sativus L. HOM05D001447 ORTHO05D008204 1.5e-19 100.9 212 35.8
Manes.09G003800 Manihot esculenta HOM05D001447 ORTHO05D005923 2.0e-19 100.5 232 34.1
Prupe.4G257000 Prunus persica HOM05D001447 ORTHO05D005923 2.0e-19 100.5 245 34.3
TWI23G0345 Tripterygium wilfordii HOM05D001447 ORTHO05D005923 2.0e-19 100.5 250 31.2
Cpa.g.sc84.6 Carica papaya HOM05D001447 ORTHO05D005923 2.6e-19 100.1 219 32.4
Medtr7g075050 Medicago truncatula HOM05D001447 ORTHO05D005923 2.6e-19 100.1 217 33.2
Manes.06G161200 Manihot esculenta HOM05D001447 ORTHO05D005923 3.3e-19 99.8 231 33.3
MD03G1170100 Malus domestica HOM05D001447 ORTHO05D005923 4.4e-19 99.4 211 33.6
BcaC03g18319 Brassica carinata HOM05D001447 ORTHO05D005923 9.7e-19 98.2 106 66.0
Medtr8g059560 Medicago truncatula HOM05D001447 ORTHO05D005923 9.7e-19 98.2 213 32.9
TAR623G1057 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.3e-18 97.8 221 33.9
VMungo0540G1247 Vigna mungo HOM05D001447 ORTHO05D003921 1.3e-18 97.8 216 34.3
Actinidia06934 Actinidia chinensis HOM05D001447 ORTHO05D008204 3.7e-18 96.3 95 51.6
Glyma.18G222500 Glycine max HOM05D001447 ORTHO05D005923 3.7e-18 96.3 219 34.7
Nn2g15058 Nelumbo nucifera HOM05D001447 ORTHO05D005923 4.8e-18 95.9 235 32.8
PGR119G0225 Punica granatum HOM05D001447 ORTHO05D005923 6.3e-18 95.5 221 30.3
MD11G1187600 Malus domestica HOM05D001447 ORTHO05D005923 8.2e-18 95.1 217 34.1
Eucgr.J00732 Eucalyptus grandis HOM05D001447 ORTHO05D005923 1.1e-17 94.7 234 30.8
Ciclev10006845m.g Citrus clementina HOM05D001447 ORTHO05D005923 1.4e-17 94.4 93 52.7
Cc01_g06480 Coffea canephora HOM05D001447 ORTHO05D005923 1.4e-17 94.4 226 35.0
CAN.G625.44 Capsicum annuum HOM05D001447 ORTHO05D005923 1.8e-17 94.0 217 30.4
CANSAT54G2333 Cannabis sativa HOM05D001447 ORTHO05D005923 2.4e-17 93.6 231 33.3
Lalb_Chr17g0336631 Lupinus albus HOM05D001447 ORTHO05D005923 3.1e-17 93.2 255 32.2
Psat3g114240 Pisum sativum HOM05D001447 ORTHO05D005923 3.1e-17 93.2 218 31.2
LjContig00136g0008106 Lotus japonicus HOM05D001447 ORTHO05D005923 5.3e-17 92.4 223 31.8
Peaxi162Scf00394g00910 Petunia axillaris HOM05D001447 ORTHO05D005923 1.6e-16 90.9 214 34.1
Phvul.008G074800 Phaseolus vulgaris HOM05D001447 ORTHO05D005923 2.0e-16 90.5 204 33.8
QL01p018064 Quercus lobata HOM05D001447 ORTHO05D005923 2.0e-16 90.5 94 50.0
FvH4_3g28310 Fragaria vesca HOM05D001447 ORTHO05D005923 5.9e-16 89.0 231 32.0
FAN11G3154 Fragaria x ananassa HOM05D001447 ORTHO05D005923 5.9e-16 89.0 231 32.0
Glyma.09G267400 Glycine max HOM05D001447 ORTHO05D005923 5.9e-16 89.0 220 39.1
Lalb_Chr20g0108071 Lupinus albus HOM05D001447 ORTHO05D005923 5.9e-16 89.0 92 50.0
FAN16G0976 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.0e-15 88.2 231 32.9
Sopen02g030930 Solanum pennellii HOM05D001447 ORTHO05D005923 1.0e-15 88.2 218 31.7
Atru.chr3.2630 Acer truncatum HOM05D001447 ORTHO05D005923 1.3e-15 87.8 87 54.0
Actinidia16355 Actinidia chinensis HOM05D001447 ORTHO05D005923 1.3e-15 87.8 95 48.4
Migut.O00259 Erythranthe guttata HOM05D001447 ORTHO05D005923 1.3e-15 87.8 212 37.3
FAN21G0933 Fragaria x ananassa HOM05D001447 ORTHO05D005923 1.3e-15 87.8 231 32.9
MBI13_g04766_MAGBIO Magnolia biondii HOM05D001447 ORTHO05D005923 3.8e-15 86.3 237 30.8
AUR62000166 Chenopodium quinoa HOM05D001447 ORTHO05D005923 5.0e-15 85.9 228 30.7
FAN25G1867 Fragaria x ananassa HOM05D001447 ORTHO05D005923 6.5e-15 85.5 231 32.5
PSO170G2976 Papaver somniferum HOM05D001447 ORTHO05D005923 6.5e-15 85.5 222 33.3
unitig_8.g3773 Utricularia gibba HOM05D001447 ORTHO05D005923 6.5e-15 85.5 94 50.0
BcaC04g19960 Brassica carinata HOM05D001447 ORTHO05D005923 8.5e-15 85.1 100 63.0
PSO384G1304 Papaver somniferum HOM05D001447 ORTHO05D005923 8.5e-15 85.1 217 31.8
Hund21995 Selenicereus undatus HOM05D001447 ORTHO05D005923 8.5e-15 85.1 86 51.2
Sc09g0000900 Simmondsia chinensis HOM05D001447 ORTHO05D005923 8.5e-15 85.1 203 30.5
DCAR_002089 Daucus carota HOM05D001447 ORTHO05D005923 1.1e-14 84.7 88 47.7
PSO339G5991 Papaver somniferum HOM05D001447 ORTHO05D005923 1.5e-14 84.3 223 32.7
arahy.Tifrunner.gnm1.ann1.Q3UL2U Arachis hypogaea HOM05D001447 ORTHO05D005923 1.9e-14 84.0 219 32.4
SalBow4G0828 Salvia bowleyana HOM05D001447 ORTHO05D005923 1.9e-14 84.0 91 47.3
VMungo1383G2912 Vigna mungo HOM05D001447 ORTHO05D005923 1.9e-14 84.0 205 32.2
arahy.Tifrunner.gnm1.ann1.QJKL08 Arachis hypogaea HOM05D001447 ORTHO05D005923 3.2e-14 83.2 219 32.4
Nitab4.5_0003652g0030 Nicotiana tabacum HOM05D001447 ORTHO05D005923 4.2e-14 82.8 220 31.8
vmacro04118 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 9.4e-14 81.6 95 49.5
PGSC0003DMG400026385 Solanum tuberosum HOM05D001447 ORTHO05D005923 1.2e-13 81.3 88 47.7
ECA233G1682 Erigeron canadensis HOM05D001447 ORTHO05D005923 2.1e-13 80.5 228 30.7
Lj5A793G14 Lonicera japonica HOM05D001447 ORTHO05D005923 2.7e-13 80.1 92 46.7
Solyc02g086250.4 Solanum lycopersicum HOM05D001447 ORTHO05D005923 2.7e-13 80.1 220 30.9
C09p74960 Brassica napus HOM05D015278 ORTHO05D005923 4.7e-13 79.3 57 84.2
CSS0020855 Camellia sinensis var. sinensis HOM05D001447 ORTHO05D005923 4.7e-13 79.3 237 32.1
Lj2A623T26 Lonicera japonica HOM05D001447 ORTHO05D005923 4.7e-13 79.3 91 45.1
SHI27451 Sapria himalayana HOM05D001447 ORTHO05D000654 1.0e-12 78.2 86 43.0
HPP92_015725 Vanilla planifolia HOM05D001447 ORTHO05D005923 1.0e-12 78.2 211 29.4
Aqoxy2G00276 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 1.4e-12 77.8 217 29.5
Rhsim13G0217200 Rhododendron simsii HOM05D001447 ORTHO05D005923 1.4e-12 77.8 95 50.5
C02p22810 Brassica napus HOM05D015278 ORTHO05D005923 1.8e-12 77.4 57 82.5
Hma1.2p1_1116F.1_g258880 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 1.8e-12 77.4 231 29.0
Hma1.2p1_1503F.1_g287490 Hydrangea macrophylla HOM05D001447 ORTHO05D005923 1.8e-12 77.4 217 31.3
C01p41070 Brassica napus HOM05D015278 ORTHO05D005923 2.3e-12 77.0 57 82.5
C04p53240 Brassica napus HOM05D015278 ORTHO05D005923 3.0e-12 76.6 57 82.5
C04p53330 Brassica napus HOM05D015278 ORTHO05D005923 3.0e-12 76.6 57 82.5
SGA_v2.0_scaffold25G10748 Striga asiatica HOM05D001447 ORTHO05D005923 4.0e-12 76.3 93 44.1
AUR62039845 Chenopodium quinoa HOM05D001447 ORTHO05D005923 6.8e-12 75.5 241 29.0
ATR0681G241 Amborella trichopoda HOM05D001447 ORTHO05D005923 8.8e-12 75.1 94 46.8
Ah.06g193790 Amaranthus hybridus HOM05D001447 ORTHO05D005923 1.5e-11 74.3 223 31.8
C07p45330 Brassica napus HOM05D015278 ORTHO05D005923 3.4e-11 73.2 57 80.7
TAR623G0319 Trochodendron aralioides HOM05D001447 ORTHO05D005923 4.4e-11 72.8 65 53.8
HanXRQChr14g0441711 Helianthus annuus HOM05D001447 ORTHO05D005923 5.7e-11 72.4 227 30.8
Lsat_1_v5_gn_2_28360 Lactuca sativa HOM05D001447 ORTHO05D005923 7.5e-11 72.0 219 31.1
TAR623G0653 Trochodendron aralioides HOM05D001447 ORTHO05D005923 1.3e-10 71.2 56 60.7
EL10Ac4g10184 Beta vulgaris HOM05D001447 ORTHO05D005923 3.7e-10 69.7 217 29.0
vmacro10456 Vaccinium macrocarpon HOM05D001447 ORTHO05D005923 3.7e-10 69.7 259 28.2
Aqoxy2G00275 Aquilegia oxysepala HOM05D001447 ORTHO05D005923 4.8e-10 69.3 87 44.8
Os06g0245600 Oryza sativa ssp. japonica HOM05D001447 ORTHO05D005923 1.1e-09 68.2 221 25.8
Thhalv10023995m.g Eutrema salsugineum HOM05D001447 ORTHO05D005923 1.8e-09 67.4 190 32.6
CDE02G0596 Ceratophyllum demersum HOM05D001447 ORTHO05D005923 2.4e-09 67.0 85 41.2
TAR622G0649 Trochodendron aralioides HOM05D000050 ORTHO05D000654 5.4e-09 65.9 53 58.5
ECA234G3051 Erigeron canadensis HOM05D001447 ORTHO05D005923 9.1e-09 65.1 219 29.7
Sed0027916 Sechium edule HOM05D001447 ORTHO05D005923 3.8e-07 59.7 213 35.7
PSO210G7517 Papaver somniferum HOM05D001447 ORTHO05D005923 6.5e-07 58.9 222 27.9


User provided reference genes

Program Settings