Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01430 Brassica carinata HOM05D000786 ORTHO05D006216 1.3e-42 176.0 88 100.0
BcaC04g20992 Brassica carinata HOM05D000786 ORTHO05D006216 1.1e-41 172.9 88 97.7
AT4G09890 Arabidopsis thaliana HOM05D000786 ORTHO05D006216 1.8e-41 172.2 88 96.6
AL6G43590 Arabidopsis lyrata HOM05D000786 ORTHO05D006216 4.0e-41 171.0 88 95.5
Carub.0006s2842 Capsella rubella HOM05D000786 ORTHO05D006216 4.0e-41 171.0 88 95.5
CARHR260880 Cardamine hirsuta HOM05D000786 ORTHO05D006216 1.5e-40 169.1 88 94.3
Sp6g07600 Schrenkiella parvula HOM05D000786 ORTHO05D006216 1.3e-39 166.0 88 93.2
Thhalv10029196m.g Eutrema salsugineum HOM05D000786 ORTHO05D006216 4.9e-39 164.1 88 90.9
Aa31LG9G12090 Aethionema arabicum HOM05D000786 ORTHO05D006216 4.8e-34 147.5 88 85.2
THA.LOC109116395 Tarenaya hassleriana HOM05D000786 ORTHO05D006216 3.3e-27 124.8 87 77.0
Cpa.g.sc49.82 Carica papaya HOM05D000786 ORTHO05D006216 2.5e-19 98.6 94 55.3
Manes.18G094200 Manihot esculenta HOM05D000786 ORTHO05D006216 7.4e-19 97.1 95 58.9
CANSAT25G1840 Cannabis sativa HOM05D000786 ORTHO05D006216 2.2e-18 95.5 91 56.0
Duzib116G0195 Durio zibethinus HOM05D000786 ORTHO05D006216 4.8e-18 94.4 94 57.4
Potri.005G195800 Populus trichocarpa HOM05D000786 ORTHO05D006216 8.2e-18 93.6 94 56.4
Dinv41045 Davidia involucrata HOM05D000786 ORTHO05D006216 1.8e-17 92.4 86 57.0
RcHm_v2.0_Chr6g0274371 Rosa chinensis HOM05D000786 ORTHO05D006216 4.1e-17 91.3 94 56.4
Thecc.08G158200 Theobroma cacao HOM05D000786 ORTHO05D006216 5.3e-17 90.9 94 55.3
GSVIVG01034575001 Vitis vinifera HOM05D000786 ORTHO05D006216 6.9e-17 90.5 93 54.8
Ciclev10003573m.g Citrus clementina HOM05D000786 ORTHO05D006216 1.2e-16 89.7 83 61.4
PGSC0003DMG400025091 Solanum tuberosum HOM05D000786 ORTHO05D006216 1.5e-16 89.4 93 53.8
Cfa018290 Carpinus fangiana HOM05D000786 ORTHO05D006216 2.0e-16 89.0 94 54.3
COL.COLO4_03364 Corchorus olitorius HOM05D000786 ORTHO05D006216 2.0e-16 89.0 83 57.8
Haze_17797 Corylus avellana HOM05D000786 ORTHO05D006216 2.0e-16 89.0 94 54.3
Peaxi162Scf00360g10014 Petunia axillaris HOM05D000786 ORTHO05D006216 2.6e-16 88.6 94 51.1
Potri.002G065200 Populus trichocarpa HOM05D000786 ORTHO05D006216 2.6e-16 88.6 83 57.8
Atru.chr13.2022 Acer truncatum HOM05D000786 ORTHO05D006216 3.4e-16 88.2 83 59.0
Aqoxy5G02027 Aquilegia oxysepala HOM05D000786 ORTHO05D006216 3.4e-16 88.2 88 54.5
Aqoxy5G02029 Aquilegia oxysepala HOM05D000786 ORTHO05D006216 3.4e-16 88.2 88 54.5
QL02p038248 Quercus lobata HOM05D000786 ORTHO05D006216 3.4e-16 88.2 94 55.3
TAR381G0907 Trochodendron aralioides HOM05D000786 ORTHO05D006216 3.4e-16 88.2 94 52.1
Dinv25892 Davidia involucrata HOM05D000786 ORTHO05D006216 5.9e-16 87.4 84 58.3
FvH4_2g13100 Fragaria vesca HOM05D000786 ORTHO05D006216 5.9e-16 87.4 94 55.3
FAN15G3470 Fragaria x ananassa HOM05D000786 ORTHO05D006216 5.9e-16 87.4 94 55.3
FAN20G2557 Fragaria x ananassa HOM05D000786 ORTHO05D006216 5.9e-16 87.4 94 55.3
FAN24G2413 Fragaria x ananassa HOM05D000786 ORTHO05D006216 5.9e-16 87.4 94 55.3
FAN27G0158 Fragaria x ananassa HOM05D000786 ORTHO05D006216 5.9e-16 87.4 94 55.3
CiPaw.15G013200 Carya illinoinensis HOM05D000786 ORTHO05D006216 7.7e-16 87.0 94 54.3
Prupe.8G039100 Prunus persica HOM05D000786 ORTHO05D006216 1.0e-15 86.7 94 53.2
CSS0042693 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 1.3e-15 86.3 94 54.3
CAN.G495.6 Capsicum annuum HOM05D000786 ORTHO05D006216 1.3e-15 86.3 95 52.6
Cc10_g15160 Coffea canephora HOM05D000786 ORTHO05D006216 2.2e-15 85.5 83 55.4
Gohir.A02G063100 Gossypium hirsutum HOM05D000786 ORTHO05D006216 2.2e-15 85.5 95 50.5
Medtr1g098310 Medicago truncatula HOM05D000786 ORTHO05D006216 2.2e-15 85.5 94 54.3
ClCG08G003150 Citrullus lanatus HOM05D000786 ORTHO05D006216 2.9e-15 85.1 94 53.2
Gohir.D02G068800 Gossypium hirsutum HOM05D000786 ORTHO05D006216 2.9e-15 85.1 94 51.1
Nn5g28813 Nelumbo nucifera HOM05D000786 ORTHO05D006216 2.9e-15 85.1 94 52.1
ATR0800G011 Amborella trichopoda HOM05D000786 ORTHO05D006216 3.8e-15 84.7 79 59.5
TWI34G1146 Tripterygium wilfordii HOM05D000786 ORTHO05D006216 3.8e-15 84.7 94 53.2
MELO3C024975.2 Cucumis melo HOM05D000786 ORTHO05D006216 5.0e-15 84.3 94 53.2
CsaV3_6G002840 Cucumis sativus L. HOM05D000786 ORTHO05D006216 5.0e-15 84.3 94 53.2
Glyma.10G222300 Glycine max HOM05D000786 ORTHO05D006216 5.0e-15 84.3 94 53.2
Lj5g0026860 Lotus japonicus HOM05D000786 ORTHO05D006216 5.0e-15 84.3 94 50.0
TPR.G10805 Trifolium pratense HOM05D000786 ORTHO05D006216 5.0e-15 84.3 94 53.2
Glyma.20G169300 Glycine max HOM05D000786 ORTHO05D006216 6.5e-15 84.0 94 52.1
Gorai.005G077700 Gossypium raimondii HOM05D000786 ORTHO05D006216 6.5e-15 84.0 83 54.2
MBI16_g14985_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D006216 6.5e-15 84.0 83 53.0
Sabra05G0149300 Salix brachista HOM05D000786 ORTHO05D006216 6.5e-15 84.0 83 55.4
Atru.chr4.724 Acer truncatum HOM05D000786 ORTHO05D006216 1.1e-14 83.2 84 52.4
Eucgr.F02688 Eucalyptus grandis HOM05D000786 ORTHO05D006216 1.4e-14 82.8 93 51.6
Nitab4.5_0000099g0130 Nicotiana tabacum HOM05D000786 ORTHO05D006216 2.5e-14 82.0 92 52.2
CSS0019732 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 3.2e-14 81.6 84 51.2
Lsat_1_v5_gn_4_138400 Lactuca sativa HOM05D000786 ORTHO05D006216 3.2e-14 81.6 81 51.9
Phvul.007G082800 Phaseolus vulgaris HOM05D000786 ORTHO05D006216 4.2e-14 81.3 94 51.1
PGR119G2557 Punica granatum HOM05D000786 ORTHO05D006216 4.2e-14 81.3 83 56.6
Actinidia17774 Actinidia chinensis HOM05D000786 ORTHO05D006216 5.5e-14 80.9 84 53.6
Nitab4.5_0005070g0010 Nicotiana tabacum HOM05D000786 ORTHO05D006216 1.2e-13 79.7 93 50.5
MD10G1033400 Malus domestica HOM05D000786 ORTHO05D006216 1.6e-13 79.3 80 55.0
Manes.12G145200 Manihot esculenta HOM05D000786 ORTHO05D006216 1.6e-13 79.3 86 50.0
Nn1g06009 Nelumbo nucifera HOM05D000786 ORTHO05D006216 2.1e-13 79.0 94 46.8
MSTRG.3817 Avicennia marina HOM05D000786 ORTHO05D006216 2.7e-13 78.6 77 53.2
DCAR_011463 Daucus carota HOM05D000786 ORTHO05D006216 2.7e-13 78.6 78 52.6
Migut.L00056 Erythranthe guttata HOM05D000786 ORTHO05D006216 2.7e-13 78.6 77 57.1
Glyma.02G079500 Glycine max HOM05D000786 ORTHO05D006216 2.7e-13 78.6 88 51.1
HanXRQChr15g0493541 Helianthus annuus HOM05D000786 ORTHO05D006216 2.7e-13 78.6 76 52.6
Potri.007G077500 Populus trichocarpa HOM05D000786 ORTHO05D006216 2.7e-13 78.6 87 48.3
Lsat_1_v5_gn_9_42040 Lactuca sativa HOM05D000786 ORTHO05D006216 3.6e-13 78.2 89 51.7
Rhsim10G0146600 Rhododendron simsii HOM05D000786 ORTHO05D006216 3.6e-13 78.2 81 53.1
Rhsim10G0147300 Rhododendron simsii HOM05D000786 ORTHO05D006216 3.6e-13 78.2 81 53.1
Ciclev10026866m.g Citrus clementina HOM05D000786 ORTHO05D006216 4.6e-13 77.8 85 52.9
Cc07_g16650 Coffea canephora HOM05D000786 ORTHO05D006216 7.9e-13 77.0 76 52.6
HanXRQChr09g0254011 Helianthus annuus HOM05D000786 ORTHO05D006216 7.9e-13 77.0 76 50.0
Hma1.2p1_0529F.1_g173260 Hydrangea macrophylla HOM05D000786 ORTHO05D006216 7.9e-13 77.0 80 55.0
Sc16g0004100 Simmondsia chinensis HOM05D000786 ORTHO05D006216 7.9e-13 77.0 81 48.1
Phvul.004G091400 Phaseolus vulgaris HOM05D000786 ORTHO05D006216 1.4e-12 76.3 88 52.3
Sed0000205 Sechium edule HOM05D000786 ORTHO05D006216 3.0e-12 75.1 94 48.9
SGA_v2.0_scaffold34G13633 Striga asiatica HOM05D000786 ORTHO05D006216 5.1e-12 74.3 80 51.2
unitig_0.g1746 Utricularia gibba HOM05D000786 ORTHO05D006216 5.1e-12 74.3 79 49.4
Lj2g0013103 Lotus japonicus HOM05D000786 ORTHO05D006216 6.7e-12 73.9 88 45.5
Sed0024174 Sechium edule HOM05D000786 ORTHO05D006216 6.7e-12 73.9 83 51.8
Glyma.16G163900 Glycine max HOM05D000786 ORTHO05D006216 8.8e-12 73.6 81 50.6
Lalb_Chr06g0161691 Lupinus albus HOM05D000786 ORTHO05D006216 8.8e-12 73.6 81 51.9
Prupe.6G166900 Prunus persica HOM05D000786 ORTHO05D006216 8.8e-12 73.6 85 50.6
CSS0001280 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D006216 1.1e-11 73.2 78 50.0
SalBow5G2955 Salvia bowleyana HOM05D000786 ORTHO05D006216 1.1e-11 73.2 77 53.2
SalBow6G2838 Salvia bowleyana HOM05D000786 ORTHO05D006216 1.1e-11 73.2 94 46.8
ClCG01G015870 Citrullus lanatus HOM05D000786 ORTHO05D006216 1.5e-11 72.8 81 50.6
Oeu028354.1 Olea europaea HOM05D000786 ORTHO05D006216 1.5e-11 72.8 80 53.8
Os06g0686600 Oryza sativa ssp. japonica HOM05D000786 ORTHO05D006216 1.5e-11 72.8 57 61.4
Hund03512 Selenicereus undatus HOM05D005778 ORTHO05D007245 1.5e-11 72.8 85 47.1
Ah.05g168150 Amaranthus hybridus HOM05D000786 ORTHO05D006216 2.5e-11 72.0 79 53.2
CAN.G1248.27 Capsicum annuum HOM05D000786 ORTHO05D006216 2.5e-11 72.0 76 47.4
Lalb_Chr08g0238761 Lupinus albus HOM05D000786 ORTHO05D006216 2.5e-11 72.0 84 48.8
unitig_747.g21813 Utricularia gibba HOM05D000786 ORTHO05D006216 2.5e-11 72.0 78 48.7
VMungo0720G1602 Vigna mungo HOM05D000786 ORTHO05D006216 3.3e-11 71.6 71 53.5
Cfa002784 Carpinus fangiana HOM05D000786 ORTHO05D006216 4.3e-11 71.2 85 49.4
COL.COLO4_03470 Corchorus olitorius HOM05D000786 ORTHO05D006216 4.3e-11 71.2 88 47.7
FAN19G0145 Fragaria x ananassa HOM05D000786 ORTHO05D006216 4.3e-11 71.2 87 46.0
MD15G1335800 Malus domestica HOM05D000786 ORTHO05D006216 4.3e-11 71.2 85 48.2
QL06p031416 Quercus lobata HOM05D000786 ORTHO05D006216 4.3e-11 71.2 83 49.4
FvH4_1g23170 Fragaria vesca HOM05D000786 ORTHO05D006216 5.7e-11 70.9 87 46.0
FAN23G1700 Fragaria x ananassa HOM05D000786 ORTHO05D006216 5.7e-11 70.9 87 46.0
Solyc04g051470.1 Solanum lycopersicum HOM05D000786 ORTHO05D006216 5.7e-11 70.9 76 48.7
Sopen04g022850 Solanum pennellii HOM05D000786 ORTHO05D006216 5.7e-11 70.9 76 48.7
Migut.N03203 Erythranthe guttata HOM05D000786 ORTHO05D006216 7.4e-11 70.5 88 46.6
Oeu015843.1 Olea europaea HOM05D000786 ORTHO05D006216 7.4e-11 70.5 83 45.8
EL10Ac6g15224 Beta vulgaris HOM05D005778 ORTHO05D007245 9.7e-11 70.1 86 46.5
CsaV3_6G042150 Cucumis sativus L. HOM05D000786 ORTHO05D006216 9.7e-11 70.1 81 50.6
MBI19_g15944_MAGBIO Magnolia biondii HOM05D000786 ORTHO05D006216 9.7e-11 70.1 90 46.7
Haze_25081 Corylus avellana HOM05D000786 ORTHO05D006216 1.3e-10 69.7 85 48.2
FAN26G3223 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.3e-10 69.7 87 44.8
FAN28G3029 Fragaria x ananassa HOM05D000786 ORTHO05D006216 1.3e-10 69.7 87 44.8
PGSC0003DMG402019696 Solanum tuberosum HOM05D000786 ORTHO05D006216 1.3e-10 69.7 76 47.4
Glyma.06G148000 Glycine max HOM05D000786 ORTHO05D006216 1.7e-10 69.3 84 46.4
HPP92_027891 Vanilla planifolia HOM05D000786 ORTHO05D006216 1.7e-10 69.3 82 52.4
Lalb_Chr19g0130081 Lupinus albus HOM05D000786 ORTHO05D006216 2.2e-10 68.9 81 48.1
RcHm_v2.0_Chr2g0117891 Rosa chinensis HOM05D000786 ORTHO05D006216 2.8e-10 68.6 87 44.8
HPP92_018298 Vanilla planifolia HOM05D000786 ORTHO05D006216 2.8e-10 68.6 82 52.4
MELO3C007453.2 Cucumis melo HOM05D000786 ORTHO05D006216 3.7e-10 68.2 81 49.4
Sabra07G0065500 Salix brachista HOM05D000786 ORTHO05D006216 4.8e-10 67.8 86 46.5
AUR62034855 Chenopodium quinoa HOM05D000786 ORTHO05D006216 8.2e-10 67.0 88 47.7
AUR62044756 Chenopodium quinoa HOM05D000786 ORTHO05D006216 8.2e-10 67.0 88 47.7
Sabra05G0071600 Salix brachista HOM05D000786 ORTHO05D006216 1.8e-09 65.9 86 44.2
CiPaw.03G131800 Carya illinoinensis HOM05D000786 ORTHO05D006216 2.4e-09 65.5 100 43.0
Zm00001eb225670 Zea mays HOM05D000786 ORTHO05D006216 5.3e-09 64.3 76 44.7
CDE04G0685 Ceratophyllum demersum HOM05D000786 ORTHO05D006216 9.1e-09 63.5 80 48.8
CiPaw.16G009100 Carya illinoinensis HOM05D000786 ORTHO05D006216 1.2e-08 63.2 66 54.5
SMO172G0046 Selaginella moellendorffii HOM05D000786 ORTHO05D000779 2.0e-08 62.4 72 48.6
PSO541G3255 Papaver somniferum HOM05D000786 ORTHO05D006216 4.5e-08 61.2 86 46.5
Glyma.04G217900 Glycine max HOM05D000786 ORTHO05D006216 1.3e-07 59.7 84 46.4
Peaxi162Scf00025g00337 Petunia axillaris HOM05D000786 ORTHO05D006216 8.5e-07 57.0 76 44.7
Zm00001eb273520 Zea mays HOM05D000786 ORTHO05D006216 1.1e-06 56.6 49 53.1
CARHR142870 Cardamine hirsuta HOM05D000786 ORTHO05D000779 2.5e-06 55.5 39 64.1
Ca_21289_v3 Cicer arietinum L. HOM05D000786 ORTHO05D000779 2.5e-06 55.5 49 57.1
Dinv02076 Davidia involucrata HOM05D000786 ORTHO05D000779 2.5e-06 55.5 45 53.3
Mapoly0050s0122 Marchantia polymorpha HOM05D000786 ORTHO05D000779 2.5e-06 55.5 37 62.2
Actinidia15584 Actinidia chinensis HOM05D001250 ORTHO05D000627 4.2e-06 54.7 39 59.0
AagrBONN_evm.TU.Sc2ySwM_228.2913 Anthoceros agrestis HOM05D000786 ORTHO05D000779 4.2e-06 54.7 73 42.5
AL6G22750 Arabidopsis lyrata HOM05D000786 ORTHO05D000779 4.2e-06 54.7 73 39.7
Thecc.09G085500 Theobroma cacao HOM05D000786 ORTHO05D000779 4.2e-06 54.7 51 52.9
Lsat_1_v5_gn_5_143041 Lactuca sativa HOM05D000786 ORTHO05D000779 5.5e-06 54.3 74 40.5
Prupe.3G045700 Prunus persica HOM05D000786 ORTHO05D000779 5.5e-06 54.3 36 61.1
AT5G11970 Arabidopsis thaliana HOM05D000786 ORTHO05D000779 7.2e-06 53.9 69 40.6
CSS0019123 Camellia sinensis var. sinensis HOM05D000786 ORTHO05D000779 7.2e-06 53.9 51 51.0
Duzib138G1722 Durio zibethinus HOM05D000786 ORTHO05D000779 7.2e-06 53.9 39 56.4
ECA232G3182 Erigeron canadensis HOM05D000002 ORTHO05D000001 7.2e-06 53.9 58 46.6
MD09G1189600 Malus domestica HOM05D000786 ORTHO05D000779 7.2e-06 53.9 36 61.1
MD17G1172800 Malus domestica HOM05D000786 ORTHO05D000779 7.2e-06 53.9 36 61.1
SGA_v2.0_scaffold4G02051 Striga asiatica HOM05D000786 ORTHO05D000779 7.2e-06 53.9 52 50.0
BcaB02g08768 Brassica carinata HOM05D000786 ORTHO05D000779 9.4e-06 53.5 53 52.8
Glyma.13G348000 Glycine max HOM05D000786 ORTHO05D000779 9.4e-06 53.5 48 54.2
Medtr3g104640 Medicago truncatula HOM05D000786 ORTHO05D000779 9.4e-06 53.5 51 47.1
Medtr8g018360 Medicago truncatula HOM05D000786 ORTHO05D000779 9.4e-06 53.5 88 37.5
Sc06g0001010 Simmondsia chinensis HOM05D000786 ORTHO05D000779 9.4e-06 53.5 41 53.7


User provided reference genes

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