Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01378 Brassica carinata HOM05D004240 ORTHO05D005082 3.1e-47 191.4 94 100.0
BcaC04g20940 Brassica carinata HOM05D004240 ORTHO05D005082 2.9e-45 184.9 94 95.7
A09p29740 Brassica napus HOM05D004240 ORTHO05D005082 2.9e-45 184.9 94 95.7
C09p37710 Brassica napus HOM05D004240 ORTHO05D005082 2.9e-45 184.9 94 95.7
BolC9t56602H Brassica oleracea HOM05D004240 ORTHO05D005082 2.9e-45 184.9 94 95.7
BraA09t38538Z Brassica rapa HOM05D004240 ORTHO05D005082 2.9e-45 184.9 94 95.7
Sp6g08590 Schrenkiella parvula HOM05D004240 ORTHO05D005082 4.2e-44 181.0 94 92.6
Thhalv10029093m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 8.7e-42 173.3 94 88.3
BcaC01g04739 Brassica carinata HOM05D004240 ORTHO05D005082 1.5e-41 172.6 94 91.5
C03p34300 Brassica napus HOM05D004240 ORTHO05D005082 1.5e-41 172.6 94 91.5
A03p28370 Brassica napus HOM05D004240 ORTHO05D005082 2.5e-41 171.8 90 90.0
BraA03t12042Z Brassica rapa HOM05D004240 ORTHO05D005082 2.5e-41 171.8 90 90.0
BcaB01g02826 Brassica carinata HOM05D004240 ORTHO05D005082 4.3e-41 171.0 94 90.4
BolC3t15739H Brassica oleracea HOM05D004240 ORTHO05D005082 7.3e-41 170.2 94 90.4
AL6G41500 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 1.6e-40 169.1 94 86.2
Carub.0006s2760 Capsella rubella HOM05D004240 ORTHO05D005082 2.8e-40 168.3 94 85.1
Thhalv10028005m.g Eutrema salsugineum HOM05D004240 ORTHO05D005082 9.0e-39 163.3 94 86.2
AT5G40080 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 7.6e-38 160.2 91 85.7
AT5G39800 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 9.9e-38 159.8 91 84.6
CARHR262430 Cardamine hirsuta HOM05D004240 ORTHO05D005082 1.7e-37 159.1 86 84.9
AL7G50490 Arabidopsis lyrata HOM05D004240 ORTHO05D005082 8.4e-37 156.8 91 83.5
Carub.0007s3595 Capsella rubella HOM05D004240 ORTHO05D005082 9.3e-36 153.3 91 81.3
Gohir.A06G033500 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.3e-34 149.4 94 76.6
Gohir.D06G034400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 1.3e-34 149.4 94 76.6
Gorai.010G037900 Gossypium raimondii HOM05D004240 ORTHO05D005082 1.3e-34 149.4 94 76.6
Psat2g132800 Pisum sativum HOM05D004240 ORTHO05D005082 1.3e-34 149.4 91 76.9
Psat4g105040 Pisum sativum HOM05D004240 ORTHO05D005082 1.3e-34 149.4 91 76.9
Ca_06044_v3 Cicer arietinum L. HOM05D004240 ORTHO05D005082 3.0e-34 148.3 94 73.4
Peaxi162Scf00030g02315 Petunia axillaris HOM05D004240 ORTHO05D005082 3.9e-34 147.9 92 75.0
Peaxi162Scf00074g01332 Petunia axillaris HOM05D004240 ORTHO05D005082 3.9e-34 147.9 92 75.0
QL06p048114 Quercus lobata HOM05D004240 ORTHO05D005082 3.9e-34 147.9 93 77.4
GSVIVG01009082001 Vitis vinifera HOM05D004240 ORTHO05D005082 3.9e-34 147.9 93 76.3
Aa31LG9G14690 Aethionema arabicum HOM05D004240 ORTHO05D005082 5.1e-34 147.5 94 78.7
Cfa002500 Carpinus fangiana HOM05D004240 ORTHO05D005082 6.7e-34 147.1 94 75.5
Thecc.08G102200 Theobroma cacao HOM05D004240 ORTHO05D005082 8.7e-34 146.7 94 75.5
Cpa.g.sc79.33 Carica papaya HOM05D004240 ORTHO05D005082 1.1e-33 146.4 94 75.5
FAN15G0929 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.1e-33 146.4 94 75.5
FAN18G4030 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.1e-33 146.4 94 75.5
Manes.18G063900 Manihot esculenta HOM05D004240 ORTHO05D005082 1.1e-33 146.4 94 76.6
PGR031G0804 Punica granatum HOM05D004240 ORTHO05D005082 1.5e-33 146.0 94 73.4
Glyma.04G099100 Glycine max HOM05D004240 ORTHO05D005082 1.9e-33 145.6 91 74.7
MD02G1257900 Malus domestica HOM05D004240 ORTHO05D005082 1.9e-33 145.6 94 76.6
Manes.02G149200 Manihot esculenta HOM05D004240 ORTHO05D005082 1.9e-33 145.6 94 75.5
RcHm_v2.0_Chr3g0492081 Rosa chinensis HOM05D004240 ORTHO05D005082 1.9e-33 145.6 94 74.5
COL.COLO4_12008 Corchorus olitorius HOM05D004240 ORTHO05D005082 2.5e-33 145.2 94 73.4
Phvul.009G033000 Phaseolus vulgaris HOM05D004240 ORTHO05D005082 2.5e-33 145.2 91 74.7
QL12p001007 Quercus lobata HOM05D004240 ORTHO05D005082 2.5e-33 145.2 93 75.3
DCAR_014024 Daucus carota HOM05D004240 ORTHO05D005082 3.3e-33 144.8 94 73.4
Eucgr.F00376 Eucalyptus grandis HOM05D004240 ORTHO05D005082 3.3e-33 144.8 94 74.5
FvH4_2g10720 Fragaria vesca HOM05D004240 ORTHO05D005082 3.3e-33 144.8 94 74.5
FAN04G0949 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.3e-33 144.8 94 74.5
FAN20G0937 Fragaria x ananassa HOM05D004240 ORTHO05D005082 3.3e-33 144.8 94 74.5
ClCG09G002640 Citrullus lanatus HOM05D004240 ORTHO05D005082 4.3e-33 144.4 93 73.1
Ciclev10013208m.g Citrus clementina HOM05D004240 ORTHO05D005082 4.3e-33 144.4 93 75.3
Haze_24725 Corylus avellana HOM05D004240 ORTHO05D005082 4.3e-33 144.4 94 74.5
FvH4_5g36580 Fragaria vesca HOM05D004240 ORTHO05D005082 4.3e-33 144.4 94 74.5
FAN13G1462 Fragaria x ananassa HOM05D004240 ORTHO05D005082 4.3e-33 144.4 94 74.5
RcHm_v2.0_Chr7g0242281 Rosa chinensis HOM05D004240 ORTHO05D005082 4.3e-33 144.4 94 74.5
Sc20g0000280 Simmondsia chinensis HOM05D004240 ORTHO05D005082 4.3e-33 144.4 94 72.3
TWI36G0317 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 4.3e-33 144.4 94 75.5
Nn1g05456 Nelumbo nucifera HOM05D004240 ORTHO05D005082 5.6e-33 144.1 94 73.4
CiPaw.04G103700 Carya illinoinensis HOM05D004240 ORTHO05D005082 7.4e-33 143.7 94 73.4
AUR62004912 Chenopodium quinoa HOM05D004240 ORTHO05D005082 7.4e-33 143.7 92 75.0
Hma1.2p1_1613F.1_g293659 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 7.4e-33 143.7 91 72.5
PSO700G0162 Papaver somniferum HOM05D004240 ORTHO05D005082 7.4e-33 143.7 94 75.5
DCAR_010173 Daucus carota HOM05D004240 ORTHO05D005082 9.6e-33 143.3 94 73.4
Dinv44804 Davidia involucrata HOM05D004240 ORTHO05D005082 9.6e-33 143.3 94 72.3
FAN24G1588 Fragaria x ananassa HOM05D004240 ORTHO05D005082 9.6e-33 143.3 94 73.4
Potri.006G070700 Populus trichocarpa HOM05D004240 ORTHO05D005082 9.6e-33 143.3 94 74.5
Solyc04g074690.3 Solanum lycopersicum HOM05D004240 ORTHO05D005082 9.6e-33 143.3 93 73.1
Sopen04g029660 Solanum pennellii HOM05D004240 ORTHO05D005082 9.6e-33 143.3 93 73.1
THA.LOC104813109 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 9.6e-33 143.3 94 75.5
MELO3C023395.2 Cucumis melo HOM05D004240 ORTHO05D005082 1.3e-32 142.9 93 72.0
FAN08G1894 Fragaria x ananassa HOM05D004240 ORTHO05D005082 1.3e-32 142.9 82 79.3
MD08G1188400 Malus domestica HOM05D004240 ORTHO05D005082 1.3e-32 142.9 94 75.5
THA.LOC104816621 Tarenaya hassleriana HOM05D004240 ORTHO05D005082 1.3e-32 142.9 95 75.8
Cc06_g04150 Coffea canephora HOM05D004240 ORTHO05D005082 1.6e-32 142.5 95 72.6
Duzib093G0975 Durio zibethinus HOM05D004240 ORTHO05D005082 1.6e-32 142.5 94 73.4
Glyma.06G100800 Glycine max HOM05D004240 ORTHO05D005082 1.6e-32 142.5 83 78.3
Rhsim10G0001600 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.6e-32 142.5 94 72.3
Sed0017764 Sechium edule HOM05D004240 ORTHO05D005082 1.6e-32 142.5 84 78.6
PGR004G1351 Punica granatum HOM05D004240 ORTHO05D005082 2.1e-32 142.1 94 74.5
CSS0016123 Camellia sinensis var. sinensis HOM05D004240 ORTHO05D005082 2.8e-32 141.7 93 69.9
Rhsim02G0249800 Rhododendron simsii HOM05D004240 ORTHO05D005082 2.8e-32 141.7 94 72.3
Aqoxy2G03827 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 3.7e-32 141.4 92 71.7
Sed0022777 Sechium edule HOM05D004240 ORTHO05D005082 3.7e-32 141.4 94 70.2
TAR628G1673 Trochodendron aralioides HOM05D004240 ORTHO05D005082 3.7e-32 141.4 94 72.3
vmacro18578 Vaccinium macrocarpon HOM05D004240 ORTHO05D005082 3.7e-32 141.4 94 71.3
Dinv08862 Davidia involucrata HOM05D004240 ORTHO05D005082 4.8e-32 141.0 94 72.3
CsaV3_7G032690 Cucumis sativus L. HOM05D004240 ORTHO05D005082 6.2e-32 140.6 93 71.0
Sabra06G0052600 Salix brachista HOM05D004240 ORTHO05D005082 6.2e-32 140.6 93 73.1
Hund06956 Selenicereus undatus HOM05D004240 ORTHO05D005082 6.2e-32 140.6 94 72.3
arahy.Tifrunner.gnm1.ann1.29DKEH Arachis hypogaea HOM05D004240 ORTHO05D005082 8.1e-32 140.2 94 72.3
arahy.Tifrunner.gnm1.ann1.US6JCC Arachis hypogaea HOM05D004240 ORTHO05D005082 8.1e-32 140.2 88 73.9
AUR62011808 Chenopodium quinoa HOM05D004240 ORTHO05D005082 8.1e-32 140.2 92 72.8
Medtr5g045910 Medicago truncatula HOM05D000029 ORTHO05D002519 8.1e-32 140.2 93 75.3
PSO447G0232 Papaver somniferum HOM05D004240 ORTHO05D005082 1.1e-31 139.8 94 73.4
Prupe.1G522900 Prunus persica HOM05D004240 ORTHO05D005082 1.1e-31 139.8 94 73.4
Rhsim08G0013500 Rhododendron simsii HOM05D004240 ORTHO05D005082 1.1e-31 139.8 94 71.3
PSO541G3534 Papaver somniferum HOM05D004240 ORTHO05D005082 1.4e-31 139.4 94 71.3
PSO675G3208 Papaver somniferum HOM05D004240 ORTHO05D005082 1.4e-31 139.4 94 71.3
Prupe.6G102500 Prunus persica HOM05D004240 ORTHO05D005082 1.4e-31 139.4 92 71.7
arahy.Tifrunner.gnm1.ann1.CGL9LR Arachis hypogaea HOM05D004240 ORTHO05D005082 1.8e-31 139.0 94 72.3
arahy.Tifrunner.gnm1.ann1.LFKE78 Arachis hypogaea HOM05D004240 ORTHO05D005082 1.8e-31 139.0 94 72.3
TAR381G0524 Trochodendron aralioides HOM05D004240 ORTHO05D005082 1.8e-31 139.0 94 72.3
Ah.06g187980 Amaranthus hybridus HOM05D004240 ORTHO05D005082 2.4e-31 138.7 90 70.0
Potri.005G161600 Populus trichocarpa HOM05D004240 ORTHO05D005082 4.0e-31 137.9 94 71.3
CANSAT01G1074 Cannabis sativa HOM05D004240 ORTHO05D005082 6.9e-31 137.1 94 70.2
TWI12G0685 Tripterygium wilfordii HOM05D004240 ORTHO05D005082 1.2e-30 136.3 94 71.3
unitig_32.g11785 Utricularia gibba HOM05D004240 ORTHO05D005082 1.2e-30 136.3 81 77.8
SalBow8G1434 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.0e-30 135.6 86 69.8
SalBow8G1852 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.0e-30 135.6 86 69.8
SalBow1G5590 Salvia bowleyana HOM05D004240 ORTHO05D005082 4.5e-30 134.4 81 74.1
Migut.H02239 Erythranthe guttata HOM05D004240 ORTHO05D005082 9.9e-30 133.3 82 74.4
ECA247G1074 Erigeron canadensis HOM05D004240 ORTHO05D005082 1.7e-29 132.5 94 66.0
Lsat_1_v5_gn_6_104280 Lactuca sativa HOM05D004240 ORTHO05D005082 1.7e-29 132.5 89 69.7
CDE10G0460 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 2.2e-29 132.1 89 69.7
ECA246G1644 Erigeron canadensis HOM05D004240 ORTHO05D005082 2.2e-29 132.1 94 67.0
CDE10G1133 Ceratophyllum demersum HOM05D004240 ORTHO05D005082 8.4e-29 130.2 89 68.5
HanXRQChr10g0278161 Helianthus annuus HOM05D004240 ORTHO05D005082 8.4e-29 130.2 94 69.1
Lalb_Chr23g0270361 Lupinus albus HOM05D004240 ORTHO05D005082 1.1e-28 129.8 90 64.4
HanXRQChr05g0163111 Helianthus annuus HOM05D004240 ORTHO05D005082 1.4e-28 129.4 93 67.7
SHI31057 Sapria himalayana HOM05D000482 ORTHO05D000349 2.5e-28 128.6 82 73.2
Zm00001eb211130 Zea mays HOM05D004240 ORTHO05D005082 4.2e-28 127.9 94 64.9
SalBow1G7711 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.7e-27 125.2 90 66.7
HPP92_003085 Vanilla planifolia HOM05D000111 ORTHO05D000134 1.3e-26 122.9 73 75.3
Peaxi162Scf00701g00514 Petunia axillaris HOM05D004240 ORTHO05D005082 3.0e-26 121.7 94 61.7
Ah.06g192140 Amaranthus hybridus HOM05D004240 ORTHO05D005082 3.9e-26 121.3 122 53.3
Nn5g30001 Nelumbo nucifera HOM05D004240 ORTHO05D005082 8.7e-26 120.2 94 63.8
Duzib041G0743 Durio zibethinus HOM05D004240 ORTHO05D005082 1.1e-25 119.8 70 77.1
Atru.chr8.235 Acer truncatum HOM05D004240 ORTHO05D005082 3.3e-25 118.2 70 80.0
CAN.G857.13 Capsicum annuum HOM05D004240 ORTHO05D005082 4.3e-25 117.9 71 76.1
EL10Ac6g15351 Beta vulgaris HOM05D004240 ORTHO05D005082 1.3e-24 116.3 70 77.1
Nitab4.5_0000786g0040 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.3e-24 116.3 71 74.6
Nitab4.5_0003599g0030 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.6e-24 115.9 70 75.7
PGSC0003DMG400030836 Solanum tuberosum HOM05D004240 ORTHO05D005082 1.6e-24 115.9 70 75.7
Oeu048963.1 Olea europaea HOM05D004240 ORTHO05D005082 2.8e-24 115.2 83 63.9
Sabra05G0122300 Salix brachista HOM05D004240 ORTHO05D005082 3.7e-24 114.8 71 74.6
AUR62041013 Chenopodium quinoa HOM05D004240 ORTHO05D005082 4.8e-24 114.4 71 74.6
Oeu009430.2 Olea europaea HOM05D004240 ORTHO05D005082 8.2e-24 113.6 70 74.3
Nitab4.5_0002632g0100 Nicotiana tabacum HOM05D004240 ORTHO05D005082 1.1e-23 113.2 117 52.1
AUR62043370 Chenopodium quinoa HOM05D004240 ORTHO05D005082 7.6e-22 107.1 67 74.6
Aqoxy2G00790 Aquilegia oxysepala HOM05D004240 ORTHO05D005082 1.0e-21 106.7 71 69.0
CAN.G900.47 Capsicum annuum HOM05D004240 ORTHO05D005082 2.9e-21 105.1 71 66.2
Zm00001eb032040 Zea mays HOM05D004240 ORTHO05D005082 1.9e-20 102.4 96 56.2
Gohir.D05G226400 Gossypium hirsutum HOM05D004240 ORTHO05D005082 5.5e-20 100.9 96 55.2
Atru.chr13.1119 Acer truncatum HOM05D004240 ORTHO05D005082 1.2e-19 99.8 78 67.9
Actinidia06540 Actinidia chinensis HOM05D004240 ORTHO05D005082 3.9e-18 94.7 61 70.5
Mapoly0032s0009 Marchantia polymorpha HOM05D004240 ORTHO05D005082 3.9e-18 94.7 90 51.1
Cc03_g14470 Coffea canephora HOM05D004240 ORTHO05D005082 5.1e-18 94.4 71 60.6
Pp3c24_110 Physcomitrium patens HOM05D004240 ORTHO05D005082 9.7e-17 90.1 84 51.2
AT4G09012 Arabidopsis thaliana HOM05D004240 ORTHO05D005082 3.7e-16 88.2 48 87.5
Gorai.009G234000 Gossypium raimondii HOM05D004240 ORTHO05D005082 3.7e-16 88.2 92 56.5
Nitab4.5_0000101g0440 Nicotiana tabacum HOM05D004240 ORTHO05D005082 7.7e-14 80.5 99 47.5
SalBow1G1735 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.7e-13 79.3 51 68.6
SalBow1G5084 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.7e-13 79.3 51 68.6
SalBow1G6918 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.7e-13 79.3 51 68.6
SalBow1G8490 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.7e-13 79.3 51 68.6
SalBow1G3565 Salvia bowleyana HOM05D004240 ORTHO05D005082 2.2e-13 79.0 58 63.8
AagrBONN_evm.TU.Sc2ySwM_368.1442 Anthoceros agrestis HOM05D004240 ORTHO05D005082 1.1e-12 76.6 63 52.4
Hma1.2p1_1148F.1_g261590 Hydrangea macrophylla HOM05D004240 ORTHO05D005082 9.4e-12 73.6 49 71.4
SalBow1G1053 Salvia bowleyana HOM05D004240 ORTHO05D005082 3.6e-11 71.6 47 63.8
PRCOL_00003521 Prasinoderma coloniale HOM05D004240 ORTHO05D005082 1.0e-10 70.1 56 55.4
SalBow5G4864 Salvia bowleyana HOM05D004240 ORTHO05D005082 1.8e-10 69.3 49 63.3
HanXRQChr02g0058081 Helianthus annuus HOM05D004240 ORTHO05D005082 3.7e-08 61.6 53 54.7
MBI04_g21152_MAGBIO Magnolia biondii HOM05D004240 ORTHO05D005082 4.1e-07 58.2 42 61.9


User provided reference genes

Program Settings