Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01318 Brassica carinata HOM05D004128 ORTHO05D008395 1.8e-120 436.0 231 100.0
BraA03t14882Z Brassica rapa HOM05D004128 ORTHO05D008395 4.0e-48 195.7 150 65.3
C07p33860 Brassica napus HOM05D004128 ORTHO05D008395 3.8e-46 189.1 150 64.0
BraA05t20993Z Brassica rapa HOM05D004128 ORTHO05D008395 5.1e-43 178.7 197 50.8
BolC9t55613H Brassica oleracea HOM05D004128 ORTHO05D008395 7.3e-42 174.9 170 53.5
BraA10t42724Z Brassica rapa HOM05D004128 ORTHO05D008395 1.2e-41 174.1 170 54.1
BolC8t47837H Brassica oleracea HOM05D004128 ORTHO05D008395 1.6e-41 173.7 153 59.5
BolC6t38472H Brassica oleracea HOM05D004128 ORTHO05D008395 1.8e-40 170.2 170 51.2
BraA07t30708Z Brassica rapa HOM05D004128 ORTHO05D008395 1.8e-40 170.2 149 59.1
C07p34800 Brassica napus HOM05D004128 ORTHO05D008395 5.3e-40 168.7 145 56.6
C04p23890 Brassica napus HOM05D004128 ORTHO05D008395 2.6e-39 166.4 170 51.2
C01p27640 Brassica napus HOM05D004128 ORTHO05D008395 3.4e-39 166.0 227 43.6
BolC2t07285H Brassica oleracea HOM05D004128 ORTHO05D008395 3.4e-39 166.0 170 52.4
BolC6t38817H Brassica oleracea HOM05D004128 ORTHO05D013239 4.9e-38 162.2 115 64.3
BolC8t50772H Brassica oleracea HOM05D004128 ORTHO05D008395 4.9e-38 162.2 170 50.0
C01p25840 Brassica napus HOM05D004128 ORTHO05D008395 6.4e-38 161.8 145 55.2
C06p01800 Brassica napus HOM05D004128 ORTHO05D008395 1.6e-36 157.1 170 49.4
BolC9t56577H Brassica oleracea HOM05D004128 ORTHO05D008395 1.3e-35 154.1 120 65.8
C09p52720 Brassica napus HOM05D004128 ORTHO05D008395 4.3e-34 149.1 127 57.5
C03p49780 Brassica napus HOM05D004128 ORTHO05D008395 4.8e-33 145.6 127 56.7
C04p26230 Brassica napus HOM05D004128 ORTHO05D008395 1.1e-29 134.4 221 43.9
BolC4t24183H Brassica oleracea HOM05D004128 ORTHO05D008395 1.1e-29 134.4 221 43.9
BcaB05g23656 Brassica carinata HOM05D004128 ORTHO05D008395 1.9e-29 133.7 85 80.0
C04p39160 Brassica napus HOM05D004128 ORTHO05D008395 5.1e-27 125.6 118 54.2
BolC6t37871H Brassica oleracea HOM05D004128 ORTHO05D008395 2.1e-25 120.2 85 69.4
Carub.0093s0002 Capsella rubella HOM05D003554 ORTHO05D005130 2.8e-25 119.8 144 41.7
C08p21910 Brassica napus HOM05D004128 ORTHO05D008395 3.7e-25 119.4 85 68.2
BraA08t33244Z Brassica rapa HOM05D004128 ORTHO05D008395 6.2e-25 118.6 85 68.2
BolC9t58724H Brassica oleracea HOM05D004128 ORTHO05D008395 1.8e-24 117.1 85 68.2
C03p60470 Brassica napus HOM05D004128 ORTHO05D008395 2.4e-24 116.7 85 68.2
BcaB07g32749 Brassica carinata HOM05D008316 ORTHO05D013031 1.2e-23 114.4 142 43.0
BolC2t09432H Brassica oleracea HOM05D004128 ORTHO05D008395 1.5e-23 114.0 85 64.7
BolC3t18729H Brassica oleracea HOM05D004128 ORTHO05D008395 1.3e-22 110.9 95 53.7
BcaC08g42812 Brassica carinata HOM05D008825 ORTHO05D013031 1.7e-22 110.5 142 41.5
BolC4t27914H Brassica oleracea HOM05D008062 ORTHO05D008395 1.7e-22 110.5 96 56.2
BcaC05g27750 Brassica carinata HOM05D008825 ORTHO05D013031 2.2e-22 110.2 158 38.6
BcaNung01161 Brassica carinata HOM05D007203 ORTHO05D011558 1.1e-21 107.8 80 62.5
AL1G56530 Arabidopsis lyrata HOM05D003554 ORTHO05D005130 4.2e-21 105.9 132 40.2
AL1G56540 Arabidopsis lyrata HOM05D003554 ORTHO05D005130 4.2e-21 105.9 132 40.2
C05p37400 Brassica napus HOM05D003554 ORTHO05D005130 7.1e-21 105.1 126 44.4
BcaB08g35293 Brassica carinata HOM05D003554 ORTHO05D005130 3.5e-20 102.8 127 45.7
BcaB03g16128 Brassica carinata HOM05D003554 ORTHO05D005130 7.9e-20 101.7 127 45.7
A01p27690 Brassica napus HOM05D007203 ORTHO05D013810 1.3e-19 100.9 90 56.7
A02p26840 Brassica napus HOM05D007203 ORTHO05D013810 1.3e-19 100.9 90 56.7
A09p21540 Brassica napus HOM05D007203 ORTHO05D013810 1.3e-19 100.9 90 56.7
C03p33430 Brassica napus HOM05D007203 ORTHO05D013810 1.3e-19 100.9 90 56.7
BcaB05g24479 Brassica carinata HOM05D008316 ORTHO05D017243 1.8e-19 100.5 131 40.5
BraA05t21895Z Brassica rapa HOM05D004128 ORTHO05D008395 3.0e-19 99.8 65 72.3
BolC6t36978H Brassica oleracea HOM05D004128 ORTHO05D008395 6.7e-19 98.6 105 51.4
Carub.0007s3074 Capsella rubella HOM05D003554 ORTHO05D005130 6.7e-19 98.6 127 40.9
Aa31sc129G60 Aethionema arabicum HOM05D003554 ORTHO05D005130 8.7e-19 98.2 150 37.3
BcaB06g26180 Brassica carinata HOM05D009532 ORTHO05D005130 8.7e-19 98.2 150 40.0
Aa31LG6G9970 Aethionema arabicum HOM05D003554 ORTHO05D005130 2.5e-18 96.7 141 37.6
BolC6t39170H Brassica oleracea HOM05D004128 ORTHO05D008395 3.3e-18 96.3 90 54.4
BolC8t49801H Brassica oleracea HOM05D007203 ORTHO05D013810 4.3e-18 95.9 90 53.3
AL2G17330 Arabidopsis lyrata HOM05D003554 ORTHO05D008395 5.6e-18 95.5 131 37.4
BcaC01g04710 Brassica carinata HOM05D008825 ORTHO05D013031 1.3e-17 94.4 148 34.5
Carub.0006s2609 Capsella rubella HOM05D003554 ORTHO05D005130 2.8e-17 93.2 121 39.7
Aa31sc111G40 Aethionema arabicum HOM05D003554 ORTHO05D005130 3.7e-17 92.8 146 37.0
Aa31LG10G9040 Aethionema arabicum HOM05D003554 ORTHO05D005130 4.8e-17 92.4 140 38.6
BcaC03g16254 Brassica carinata HOM05D003554 ORTHO05D005130 4.8e-17 92.4 122 43.4
BcaB02g11374 Brassica carinata HOM05D004128 ORTHO05D008395 6.2e-17 92.0 211 37.4
BcaB02g11541 Brassica carinata HOM05D003554 ORTHO05D005130 8.2e-17 91.7 127 41.7
Carub.0001s3566 Capsella rubella HOM05D003554 ORTHO05D005130 8.2e-17 91.7 121 39.7
Carub.0002s0995 Capsella rubella HOM05D003554 ORTHO05D005130 8.2e-17 91.7 121 39.7
Aa31LG10G9030 Aethionema arabicum HOM05D003554 ORTHO05D008395 1.1e-16 91.3 134 36.6
A03p58150 Brassica napus HOM05D004128 ORTHO05D008395 1.8e-16 90.5 78 59.0
A06p29400 Brassica napus HOM05D004128 ORTHO05D008395 2.4e-16 90.1 78 59.0
Carub.0007s0014 Capsella rubella HOM05D003554 ORTHO05D005130 2.4e-16 90.1 121 38.8
Carub.0002s0984 Capsella rubella HOM05D003554 ORTHO05D005130 3.1e-16 89.7 121 38.8
BcaB01g01280 Brassica carinata HOM05D003554 ORTHO05D005130 5.3e-16 89.0 128 43.0
BcaB04g17410 Brassica carinata HOM05D003554 ORTHO05D005130 6.9e-16 88.6 135 40.7
C02p41980 Brassica napus HOM05D004128 ORTHO05D008395 9.0e-16 88.2 91 52.7
C06p37060 Brassica napus HOM05D004128 ORTHO05D008395 9.0e-16 88.2 93 50.5
Carub.0002s0983 Capsella rubella HOM05D003554 ORTHO05D005130 9.0e-16 88.2 121 38.0
BraA09t38520Z Brassica rapa HOM05D004128 ORTHO05D008395 1.2e-15 87.8 75 57.3
BolC6t36233H Brassica oleracea HOM05D004128 ORTHO05D024421 1.5e-15 87.4 235 32.8
BolC9t57647H Brassica oleracea HOM05D004128 ORTHO05D024421 1.5e-15 87.4 100 48.0
Sp6g09630 Schrenkiella parvula HOM05D004128 ORTHO05D008395 1.5e-15 87.4 107 44.9
A07p17770 Brassica napus HOM05D004128 ORTHO05D008395 2.6e-15 86.7 67 64.2
Carub.0003s2756 Capsella rubella HOM05D003554 ORTHO05D005130 2.6e-15 86.7 121 38.0
Carub.0278s0001 Capsella rubella HOM05D003554 ORTHO05D005130 3.4e-15 86.3 122 38.5
C02p33250 Brassica napus HOM05D003554 ORTHO05D005130 5.8e-15 85.5 143 34.3
C03p35510 Brassica napus HOM05D004128 ORTHO05D008395 5.8e-15 85.5 78 56.4
C05p41890 Brassica napus HOM05D004128 ORTHO05D024421 5.8e-15 85.5 100 47.0
BolC5t32921H Brassica oleracea HOM05D004128 ORTHO05D024421 5.8e-15 85.5 100 47.0
C08p07220 Brassica napus HOM05D008316 ORTHO05D017243 7.6e-15 85.1 64 57.8
BolC7t43900H Brassica oleracea HOM05D004128 ORTHO05D008395 7.6e-15 85.1 75 57.3
BcaB05g23062 Brassica carinata HOM05D004128 ORTHO05D092751 1.0e-14 84.7 66 77.3
BcaB05g23503 Brassica carinata HOM05D003554 ORTHO05D008395 1.7e-14 84.0 86 52.3
BcaC07g37416 Brassica carinata HOM05D004128 ORTHO05D008395 1.4e-13 80.9 53 73.6
BcaC09g50406 Brassica carinata HOM05D004128 ORTHO05D008395 1.4e-13 80.9 86 50.0
Aa31sc347G20 Aethionema arabicum HOM05D003554 ORTHO05D005130 1.9e-13 80.5 99 42.4
Carub.0003s3367 Capsella rubella HOM05D003554 ORTHO05D005130 1.9e-13 80.5 118 36.4
Carub.0004s0685 Capsella rubella HOM05D003554 ORTHO05D005130 2.5e-13 80.1 94 41.5
BolC3t13324H Brassica oleracea HOM05D003554 ORTHO05D008395 5.5e-13 79.0 119 37.8
BraA09t38864Z Brassica rapa HOM05D003554 ORTHO05D017243 5.5e-13 79.0 64 56.2
C01p48540 Brassica napus HOM05D004128 ORTHO05D020127 9.3e-13 78.2 66 59.1
BNapus_Darmor_BZH_scaffold_167p00050 Brassica napus HOM05D004128 ORTHO05D008395 2.1e-12 77.0 91 44.0
C03p76590 Brassica napus HOM05D008062 ORTHO05D011707 2.1e-12 77.0 56 60.7
BcaB07g31822 Brassica carinata HOM05D003554 ORTHO05D032345 3.5e-12 76.3 117 35.9
Aa31sc454G20 Aethionema arabicum HOM05D003554 ORTHO05D005130 4.6e-12 75.9 80 46.2
BolC9t53917H Brassica oleracea HOM05D008062 ORTHO05D011707 4.6e-12 75.9 56 58.9
BraA05t20613Z Brassica rapa HOM05D008062 ORTHO05D008395 4.6e-12 75.9 56 58.9
C02p57980 Brassica napus HOM05D017905 ORTHO05D017243 7.9e-12 75.1 67 52.2
C03p70570 Brassica napus HOM05D004128 ORTHO05D008395 1.0e-11 74.7 75 50.7
A05p20890 Brassica napus HOM05D004128 ORTHO05D008395 1.8e-11 73.9 76 52.6
A09p66370 Brassica napus HOM05D000181 ORTHO05D003134 1.8e-11 73.9 76 52.6
BcaB03g16082 Brassica carinata HOM05D026233 ORTHO05D005130 2.3e-11 73.6 142 34.5
BolC2t10084H Brassica oleracea HOM05D004128 ORTHO05D008395 2.3e-11 73.6 91 42.9
BraA09t38472Z Brassica rapa HOM05D004128 ORTHO05D008395 2.3e-11 73.6 76 52.6
BcaB02g10637 Brassica carinata HOM05D003554 ORTHO05D005130 3.9e-11 72.8 145 33.1
BcaC09g51181 Brassica carinata HOM05D004128 ORTHO05D024421 3.9e-11 72.8 79 50.6
BolC4t28166H Brassica oleracea HOM05D008062 ORTHO05D008395 3.9e-11 72.8 89 43.8
BolC8t48683H Brassica oleracea HOM05D008062 ORTHO05D008395 3.9e-11 72.8 89 43.8
A01p25700 Brassica napus HOM05D008062 ORTHO05D008395 6.7e-11 72.0 89 43.8
Aa31LG1G6440 Aethionema arabicum HOM05D003554 ORTHO05D005130 8.7e-11 71.6 119 33.6
BcaB04g17661 Brassica carinata HOM05D004128 ORTHO05D008395 1.1e-10 71.2 55 58.2
BolC6t35308H Brassica oleracea HOM05D004128 ORTHO05D008395 1.1e-10 71.2 76 51.3
BcaC01g00316 Brassica carinata HOM05D003554 ORTHO05D014926 3.3e-10 69.7 123 34.1
C09p42590 Brassica napus HOM05D008825 ORTHO05D017243 3.3e-10 69.7 45 66.7
BcaB06g26193 Brassica carinata HOM05D003554 ORTHO05D014926 7.4e-10 68.6 122 34.4
BraA01t02907Z Brassica rapa HOM05D007203 ORTHO05D013810 7.4e-10 68.6 63 54.0
BraA02t07693Z Brassica rapa HOM05D007203 ORTHO05D013810 7.4e-10 68.6 63 54.0
BraA09t37753Z Brassica rapa HOM05D007203 ORTHO05D013810 7.4e-10 68.6 63 54.0
BolC6t38322H Brassica oleracea HOM05D004128 ORTHO05D008395 9.7e-10 68.2 71 47.9
Aa31sc538G10 Aethionema arabicum HOM05D003554 ORTHO05D008395 1.6e-09 67.4 105 37.1
BcaC04g20884 Brassica carinata HOM05D009532 ORTHO05D013511 2.8e-09 66.6 116 33.6
BcaC04g20090 Brassica carinata HOM05D004128 ORTHO05D008395 3.7e-09 66.2 82 42.7
BolC5t30880H Brassica oleracea HOM05D004128 ORTHO05D013239 3.7e-09 66.2 50 64.0
BcaC07g39620 Brassica carinata HOM05D004128 ORTHO05D008395 4.8e-09 65.9 54 61.1
BcaC08g43125 Brassica carinata HOM05D009532 ORTHO05D013511 8.2e-09 65.1 116 32.8
C02p14940 Brassica napus HOM05D008316 ORTHO05D021631 8.2e-09 65.1 45 62.2
BolC3t19531H Brassica oleracea HOM05D003554 ORTHO05D005130 1.4e-08 64.3 81 42.0
BcaB02g11054 Brassica carinata HOM05D009532 ORTHO05D005130 1.8e-08 63.9 116 35.3
BcaB04g19552 Brassica carinata HOM05D004128 ORTHO05D008395 1.8e-08 63.9 67 52.2
BcaC01g01745 Brassica carinata HOM05D003554 ORTHO05D014926 1.8e-08 63.9 121 34.7
BcaC08g45828 Brassica carinata HOM05D003554 ORTHO05D014926 2.4e-08 63.5 110 33.6
C02p40540 Brassica napus HOM05D007984 ORTHO05D014515 4.1e-08 62.8 83 39.8
BolC3t17148H Brassica oleracea HOM05D014471 ORTHO05D017646 4.1e-08 62.8 84 39.3
BcaB04g17725 Brassica carinata HOM05D004128 ORTHO05D008395 5.3e-08 62.4 57 52.6
Aa31sc182G60 Aethionema arabicum HOM05D003554 ORTHO05D008395 6.9e-08 62.0 97 36.1
BcaC01g02197 Brassica carinata HOM05D003554 ORTHO05D014926 9.0e-08 61.6 175 29.7
BcaB01g02862 Brassica carinata HOM05D003554 ORTHO05D005130 2.0e-07 60.5 66 43.9
A08p06570 Brassica napus HOM05D008825 ORTHO05D017243 2.6e-07 60.1 45 60.0
BraA08t32673Z Brassica rapa HOM05D008825 ORTHO05D017243 2.6e-07 60.1 45 60.0
Aa31LG11G8070 Aethionema arabicum HOM05D003554 ORTHO05D005130 4.5e-07 59.3 107 33.6
Aa31LG6G10050 Aethionema arabicum HOM05D003554 ORTHO05D005130 4.5e-07 59.3 142 33.8
C09p32150 Brassica napus HOM05D008062 ORTHO05D008395 4.5e-07 59.3 74 43.2
Aa31LG7G10730 Aethionema arabicum HOM05D003554 ORTHO05D008395 7.7e-07 58.5 131 31.3
BcaB04g17902 Brassica carinata HOM05D003554 ORTHO05D005130 1.0e-06 58.2 64 43.8
BolC9t56607H Brassica oleracea HOM05D008825 ORTHO05D017243 1.0e-06 58.2 39 64.1
BcaB02g06748 Brassica carinata HOM05D008316 ORTHO05D005130 1.3e-06 57.8 104 32.7
BcaB08g35153 Brassica carinata HOM05D007984 ORTHO05D013027 1.3e-06 57.8 159 27.7
A09p64600 Brassica napus HOM05D004128 ORTHO05D008395 1.3e-06 57.8 74 41.9
C05p06180 Brassica napus HOM05D008062 ORTHO05D008395 1.3e-06 57.8 74 41.9
AT5G24275 Arabidopsis thaliana HOM05D001081 ORTHO05D004708 1.7e-06 57.4 89 32.6
BcaC08g45909 Brassica carinata HOM05D003554 ORTHO05D014926 1.7e-06 57.4 115 31.3
A02p15830 Brassica napus HOM05D008062 ORTHO05D008395 1.7e-06 57.4 74 41.9
A06p00930 Brassica napus HOM05D008062 ORTHO05D008395 1.7e-06 57.4 74 41.9
C02p45990 Brassica napus HOM05D004128 ORTHO05D008395 1.7e-06 57.4 74 41.9
C03p49840 Brassica napus HOM05D004128 ORTHO05D008395 1.7e-06 57.4 74 41.9
BraA02t06439Z Brassica rapa HOM05D004128 ORTHO05D008395 1.7e-06 57.4 74 41.9
Aa31LG9G11090 Aethionema arabicum HOM05D011111 ORTHO05D001112 2.2e-06 57.0 51 47.1
BcaB04g17553 Brassica carinata HOM05D008316 ORTHO05D014956 2.2e-06 57.0 82 40.2
BolC1t02375H Brassica oleracea HOM05D004128 ORTHO05D008395 3.8e-06 56.2 74 40.5
BolC2t07481H Brassica oleracea HOM05D008062 ORTHO05D008395 5.0e-06 55.8 74 39.2


User provided reference genes

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