Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01263 Brassica carinata HOM05D006764 ORTHO05D008516 9.2e-184 646.7 324 100.0
BraA09t38619Z Brassica rapa HOM05D006764 ORTHO05D008516 1.6e-167 592.8 325 92.0
BcaC04g20869 Brassica carinata HOM05D006764 ORTHO05D008516 4.6e-167 591.3 324 91.7
AL6G41260 Arabidopsis lyrata HOM05D006764 ORTHO05D008516 2.5e-157 558.9 316 88.0
A09p30490 Brassica napus HOM05D006764 ORTHO05D008516 3.8e-153 545.0 331 84.6
AT4G06676 Arabidopsis thaliana HOM05D006764 ORTHO05D008516 1.4e-152 543.1 316 86.4
CARHR260060 Cardamine hirsuta HOM05D006764 ORTHO05D008516 2.5e-152 542.3 316 86.1
Carub.0006s2639 Capsella rubella HOM05D006764 ORTHO05D008516 1.6e-148 529.6 327 82.9
Thhalv10028801m.g Eutrema salsugineum HOM05D006764 ORTHO05D008516 2.0e-146 522.7 324 82.7
Sp6g10710 Schrenkiella parvula HOM05D006764 ORTHO05D008516 1.5e-141 506.5 324 80.9
THA.LOC104807147 Tarenaya hassleriana HOM05D006764 ORTHO05D008516 1.4e-136 490.0 327 78.6
BolC9t56687H Brassica oleracea HOM05D006764 ORTHO05D008516 3.2e-128 462.2 250 91.2
Aa31LG3G14080 Aethionema arabicum HOM05D006764 ORTHO05D008516 7.2e-128 461.1 344 73.0
C09p38380 Brassica napus HOM05D006764 ORTHO05D008516 2.2e-124 449.5 241 91.3
Atru.chr6.751 Acer truncatum HOM05D006764 ORTHO05D008516 8.5e-113 411.0 320 67.5
MD08G1240100 Malus domestica HOM05D006764 ORTHO05D008516 8.5e-113 411.0 317 66.2
Prupe.1G576600 Prunus persica HOM05D006764 ORTHO05D008516 1.9e-112 409.8 316 66.8
CiPaw.05G051400 Carya illinoinensis HOM05D006764 ORTHO05D008516 5.5e-112 408.3 317 65.9
Potri.004G222300 Populus trichocarpa HOM05D006764 ORTHO05D008516 7.2e-112 407.9 316 67.4
MD15G1432200 Malus domestica HOM05D006764 ORTHO05D008516 6.1e-111 404.8 317 65.6
GSVIVG01023281001 Vitis vinifera HOM05D006764 ORTHO05D008516 1.0e-110 404.1 317 66.2
Dinv01845 Davidia involucrata HOM05D006764 ORTHO05D008516 3.4e-109 399.1 321 63.9
QL02p099872 Quercus lobata HOM05D006764 ORTHO05D008516 7.5e-109 397.9 317 64.0
ClCG11G013370 Citrullus lanatus HOM05D006764 ORTHO05D008516 9.7e-109 397.5 316 63.9
Actinidia39013 Actinidia chinensis HOM05D006764 ORTHO05D008516 2.4e-107 392.9 315 64.8
RcHm_v2.0_Chr7g0220831 Rosa chinensis HOM05D006764 ORTHO05D008516 5.3e-107 391.7 325 62.5
Gohir.D04G175300 Gossypium hirsutum HOM05D006764 ORTHO05D008516 7.0e-107 391.3 316 63.0
CsaV3_5G029880 Cucumis sativus L. HOM05D006764 ORTHO05D008516 1.2e-106 390.6 316 63.0
Gorai.012G166600 Gossypium raimondii HOM05D006764 ORTHO05D008516 1.2e-106 390.6 316 62.7
Manes.07G022500 Manihot esculenta HOM05D006764 ORTHO05D008516 4.5e-106 388.7 318 64.5
PGR042G2798 Punica granatum HOM05D006764 ORTHO05D008516 7.7e-106 387.9 309 63.4
Ciclev10001742m.g Citrus clementina HOM05D006764 ORTHO05D008516 1.0e-105 387.5 318 64.2
Gohir.A04G130100 Gossypium hirsutum HOM05D006764 ORTHO05D008516 1.0e-105 387.5 316 62.0
MELO3C011834.2 Cucumis melo HOM05D006764 ORTHO05D008516 2.9e-105 386.0 316 62.0
FvH4_5g28680 Fragaria vesca HOM05D006764 ORTHO05D008516 2.9e-105 386.0 322 62.4
CSS0013576 Camellia sinensis var. sinensis HOM05D006764 ORTHO05D008516 3.8e-105 385.6 315 64.8
TAR628G0031 Trochodendron aralioides HOM05D006764 ORTHO05D008516 2.5e-104 382.9 313 63.3
Thecc.02G025400 Theobroma cacao HOM05D006764 ORTHO05D008516 4.2e-104 382.1 316 62.3
Cc02_g22970 Coffea canephora HOM05D006764 ORTHO05D008516 9.4e-104 380.9 319 60.5
Lj6g0021331 Lotus japonicus HOM05D006764 ORTHO05D008516 9.4e-104 380.9 315 62.5
Glyma.12G168200 Glycine max HOM05D006764 ORTHO05D008516 2.1e-103 379.8 308 63.3
Medtr2g006100 Medicago truncatula HOM05D006764 ORTHO05D008516 8.0e-103 377.9 309 62.1
Psat1g221840 Pisum sativum HOM05D006764 ORTHO05D008516 1.4e-102 377.1 318 60.4
Glyma.16G004200 Glycine max HOM05D006764 ORTHO05D008516 5.2e-102 375.2 316 61.7
arahy.Tifrunner.gnm1.ann1.0E87YT Arachis hypogaea HOM05D006764 ORTHO05D008516 2.6e-101 372.9 316 59.5
arahy.Tifrunner.gnm1.ann1.FMX4TW Arachis hypogaea HOM05D006764 ORTHO05D008516 4.4e-101 372.1 316 59.5
Phvul.006G217900 Phaseolus vulgaris HOM05D006764 ORTHO05D008516 5.7e-101 371.7 315 61.0
VMungo0540G1274 Vigna mungo HOM05D006764 ORTHO05D008516 5.7e-101 371.7 315 61.0
TPR.G2075 Trifolium pratense HOM05D006764 ORTHO05D008516 2.2e-100 369.8 313 61.3
Eucgr.G00355 Eucalyptus grandis HOM05D006764 ORTHO05D008516 4.8e-100 368.6 318 60.4
Nn5g27693 Nelumbo nucifera HOM05D006764 ORTHO05D008516 4.8e-100 368.6 314 60.5
Sabra01G0168400 Salix brachista HOM05D006764 ORTHO05D008516 1.1e-99 367.5 316 62.7
EL10Ac6g14065 Beta vulgaris HOM05D006764 ORTHO05D008516 3.1e-99 365.9 323 59.4
Rhsim11G0125600 Rhododendron simsii HOM05D006764 ORTHO05D008516 7.0e-99 364.8 316 61.1
PSO170G2545 Papaver somniferum HOM05D006764 ORTHO05D008516 1.6e-98 363.6 314 58.9
Sc16g0001680 Simmondsia chinensis HOM05D006764 ORTHO05D008516 1.7e-97 360.1 313 61.3
Sopen10g013910 Solanum pennellii HOM05D006764 ORTHO05D008516 3.8e-97 359.0 318 58.5
Lalb_Chr18g0061021 Lupinus albus HOM05D006764 ORTHO05D008516 4.2e-96 355.5 306 61.1
CANSAT54G1059 Cannabis sativa HOM05D006764 ORTHO05D008516 1.6e-95 353.6 323 57.3
Solyc10g044910.2 Solanum lycopersicum HOM05D006764 ORTHO05D008516 1.6e-95 353.6 318 57.9
HanXRQChr10g0294521 Helianthus annuus HOM05D006764 ORTHO05D008516 4.7e-95 352.1 327 56.6
ECA234G3405 Erigeron canadensis HOM05D006764 ORTHO05D008516 1.8e-94 350.1 319 57.7
Aqoxy6G00131 Aquilegia oxysepala HOM05D006764 ORTHO05D008516 4.4e-93 345.5 323 54.5
HPP92_009268 Vanilla planifolia HOM05D006764 ORTHO05D008516 3.7e-92 342.4 314 54.8
TWI59G0639 Tripterygium wilfordii HOM05D006764 ORTHO05D008516 2.4e-91 339.7 316 60.1
Oeu023412.2 Olea europaea HOM05D006764 ORTHO05D008516 2.9e-89 332.8 270 63.3
vmacro01728 Vaccinium macrocarpon HOM05D006764 ORTHO05D008516 1.9e-88 330.1 274 62.0
Nitab4.5_0000667g0120 Nicotiana tabacum HOM05D006764 ORTHO05D008516 7.3e-88 328.2 321 55.1
SGA_v2.0_scaffold304G47898 Striga asiatica HOM05D006764 ORTHO05D008516 3.6e-87 325.9 273 62.3
unitig_748.g8283 Utricularia gibba HOM05D006764 ORTHO05D008516 4.7e-87 325.5 312 55.8
MBI17_g21477_MAGBIO Magnolia biondii HOM05D006764 ORTHO05D008516 1.7e-81 307.0 303 54.1
Migut.B00802 Erythranthe guttata HOM05D006764 ORTHO05D008516 1.1e-80 304.3 316 53.8
AUR62042713 Chenopodium quinoa HOM05D006764 ORTHO05D008516 1.9e-80 303.5 318 52.8
CAN.G1108.5 Capsicum annuum HOM05D006764 ORTHO05D008516 9.5e-80 301.2 269 57.6
FAN13G1303 Fragaria x ananassa HOM05D006764 ORTHO05D008516 4.7e-79 298.9 357 49.3
COL.COLO4_17757 Corchorus olitorius HOM05D006764 ORTHO05D008516 1.5e-77 293.9 326 54.6
FAN18G3575 Fragaria x ananassa HOM05D006764 ORTHO05D008516 7.5e-77 291.6 267 58.8
Duzib132G0537 Durio zibethinus HOM05D006764 ORTHO05D008516 2.9e-76 289.7 293 53.6
FAN08G1175 Fragaria x ananassa HOM05D006764 ORTHO05D008516 4.9e-76 288.9 282 57.1
Peaxi162Scf00002g00261 Petunia axillaris HOM05D006764 ORTHO05D008516 1.2e-74 284.3 322 49.1
ATR0709G017 Amborella trichopoda HOM05D006764 ORTHO05D008516 1.6e-74 283.9 302 48.7
SEGI_07291 Sequoiadendron giganteum HOM05D006764 ORTHO05D008516 2.1e-74 283.5 312 48.1
Zm00001eb082660 Zea mays HOM05D006764 ORTHO05D008516 1.7e-73 280.4 315 48.9
PSO017G2259 Papaver somniferum HOM05D006764 ORTHO05D008516 2.6e-69 266.5 229 59.8
Pp3c15_15530 Physcomitrium patens HOM05D006764 ORTHO05D008516 1.1e-67 261.2 296 43.9
Haze_01822 Corylus avellana HOM05D006764 ORTHO05D008516 7.1e-67 258.5 341 45.7
Lsat_1_v5_gn_5_103781 Lactuca sativa HOM05D006764 ORTHO05D008516 3.0e-65 253.1 231 57.6
Nitab4.5_0008098g0020 Nicotiana tabacum HOM05D006764 ORTHO05D008516 1.1e-64 251.1 318 45.6
Ca_00050_v3 Cicer arietinum L. HOM05D006764 ORTHO05D008516 1.6e-63 247.3 235 54.5
Mapoly0025s0102 Marchantia polymorpha HOM05D006764 ORTHO05D008516 6.2e-63 245.4 309 42.1
SHI04828 Sapria himalayana HOM05D006764 ORTHO05D008516 1.4e-62 244.2 264 50.8
Cpa.g.sc30.47 Carica papaya HOM05D006764 ORTHO05D008516 8.9e-62 241.5 153 77.1
Sed0008550 Sechium edule HOM05D000755 ORTHO05D000642 5.4e-59 232.3 265 50.9
SMO367G0572 Selaginella moellendorffii HOM05D006764 ORTHO05D008516 1.6e-55 220.7 308 42.5
SalBow7G3863 Salvia bowleyana HOM05D006764 ORTHO05D008516 4.0e-54 216.1 210 56.2
AUR62014213 Chenopodium quinoa HOM05D006764 ORTHO05D008516 3.0e-49 199.9 203 54.7
DCAR_029270 Daucus carota HOM05D006764 ORTHO05D008516 1.9e-43 180.6 187 53.5
Cfa005482 Carpinus fangiana HOM05D006764 ORTHO05D008516 4.0e-38 162.9 122 63.9
SEGI_28644 Sequoiadendron giganteum HOM05D006764 ORTHO05D008516 6.9e-38 162.2 164 50.6
AagrBONN_evm.TU.Sc2ySwM_228.3284 Anthoceros agrestis HOM05D006764 ORTHO05D008516 1.3e-36 157.9 207 42.5
Hund12938 Selenicereus undatus HOM05D006764 ORTHO05D008516 2.7e-34 150.2 160 53.8
Cre01.g032350 Chlamydomonas reinhardtii HOM05D006764 ORTHO05D008516 1.8e-33 147.5 302 33.1
Lj5A261T39 Lonicera japonica HOM05D006764 ORTHO05D008516 3.0e-33 146.7 231 43.7
FAN04G0462 Fragaria x ananassa HOM05D006764 ORTHO05D008516 9.6e-32 141.7 84 79.8
CBR_g19125 Chara braunii HOM05D006764 ORTHO05D008516 2.1e-31 140.6 188 41.0
Os04g0433200 Oryza sativa ssp. japonica HOM05D006764 ORTHO05D008516 1.9e-27 127.5 122 51.6
Hund29476 Selenicereus undatus HOM05D006764 ORTHO05D008516 1.8e-22 110.9 108 53.7
Hund29477 Selenicereus undatus HOM05D006764 ORTHO05D008516 1.8e-22 110.9 108 53.7
MCO04G067 Micromonas commoda HOM05D006764 ORTHO05D008516 1.2e-21 108.2 276 29.0
Nn6g34108 Nelumbo nucifera HOM05D006764 ORTHO05D008516 1.2e-10 71.6 81 49.4
MBI17_g13541_MAGBIO Magnolia biondii HOM05D006764 ORTHO05D008516 1.1e-08 65.1 50 66.0
Nn3g16387 Nelumbo nucifera HOM05D006764 ORTHO05D008516 5.7e-08 62.8 69 46.4
Cc00_g10410 Coffea canephora HOM05D006764 ORTHO05D008516 3.1e-06 57.0 55 60.0
Nn1g06486 Nelumbo nucifera HOM05D027421 ORTHO05D008516 3.1e-06 57.0 86 38.4


User provided reference genes

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