Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01208 Brassica carinata HOM05D007375 ORTHO05D009293 1.9e-70 269.2 150 100.0
BcaC01g02084 Brassica carinata HOM05D007375 ORTHO05D009293 4.3e-67 258.1 150 96.7
C03p68750 Brassica napus HOM05D007375 ORTHO05D009293 4.3e-67 258.1 150 96.7
BolC3t19129H Brassica oleracea HOM05D007375 ORTHO05D009293 4.3e-67 258.1 150 96.7
BraA06t25313Z Brassica rapa HOM05D007375 ORTHO05D009293 1.6e-66 256.1 149 96.6
A06p22290 Brassica napus HOM05D007375 ORTHO05D009293 1.1e-65 253.4 149 96.0
Sp5g17280 Schrenkiella parvula HOM05D007375 ORTHO05D009293 6.0e-61 237.7 152 88.8
AL5G22060 Arabidopsis lyrata HOM05D007375 ORTHO05D009293 4.7e-50 201.4 158 80.4
Aa31LG2G17160 Aethionema arabicum HOM05D007375 ORTHO05D009293 4.0e-49 198.4 160 74.4
CARHR152710 Cardamine hirsuta HOM05D007375 ORTHO05D009293 1.2e-48 196.8 157 77.1
Carub.0005s0977 Capsella rubella HOM05D007375 ORTHO05D009293 6.4e-47 191.0 163 76.1
AT3G44020 Arabidopsis thaliana HOM05D007375 ORTHO05D009293 4.3e-43 178.3 160 73.8
Thhalv10021645m.g Eutrema salsugineum HOM05D007375 ORTHO05D009293 9.0e-41 170.6 161 67.7
Aa31LG4G13610 Aethionema arabicum HOM05D007375 ORTHO05D009293 8.1e-34 147.5 115 72.2
GSVIVG01037526001 Vitis vinifera HOM05D007375 ORTHO05D009293 1.6e-29 133.3 158 60.1
CDE07G1152 Ceratophyllum demersum HOM05D007375 ORTHO05D009293 4.6e-29 131.7 144 59.7
CSS0023504 Camellia sinensis var. sinensis HOM05D007375 ORTHO05D009293 6.0e-29 131.3 112 63.4
TAR623G0701 Trochodendron aralioides HOM05D007375 ORTHO05D009293 1.0e-28 130.6 137 60.6
Migut.N02430 Erythranthe guttata HOM05D007375 ORTHO05D009293 1.8e-28 129.8 98 74.5
CiPaw.13G125500 Carya illinoinensis HOM05D007375 ORTHO05D009293 2.3e-28 129.4 155 57.4
Gohir.A07G113900 Gossypium hirsutum HOM05D007375 ORTHO05D009293 2.3e-28 129.4 160 56.9
Peaxi162Scf00259g00119 Petunia axillaris HOM05D007375 ORTHO05D009293 2.3e-28 129.4 98 72.4
Actinidia22459 Actinidia chinensis HOM05D007375 ORTHO05D009293 3.9e-28 128.6 101 75.2
Nn6g33246 Nelumbo nucifera HOM05D007375 ORTHO05D009293 3.9e-28 128.6 137 57.7
Atru.chr3.3047 Acer truncatum HOM05D007375 ORTHO05D009293 8.7e-28 127.5 161 54.0
Atru.chr3.3056 Acer truncatum HOM05D007375 ORTHO05D009293 8.7e-28 127.5 161 54.0
Gohir.D07G117600 Gossypium hirsutum HOM05D007375 ORTHO05D009293 8.7e-28 127.5 160 56.2
Gorai.001G126500 Gossypium raimondii HOM05D007375 ORTHO05D009293 8.7e-28 127.5 160 56.2
Duzib168G1424 Durio zibethinus HOM05D007375 ORTHO05D009293 1.1e-27 127.1 160 58.1
Lalb_Chr10g0105741 Lupinus albus HOM05D007375 ORTHO05D009293 1.1e-27 127.1 134 61.9
MD11G1177000 Malus domestica HOM05D007375 ORTHO05D009293 1.9e-27 126.3 166 54.8
Phvul.008G210600 Phaseolus vulgaris HOM05D007375 ORTHO05D009293 1.9e-27 126.3 154 58.4
VMungo0647G0066 Vigna mungo HOM05D007375 ORTHO05D009293 3.3e-27 125.6 159 56.6
MSTRG.18802 Avicennia marina HOM05D007375 ORTHO05D009293 4.3e-27 125.2 162 54.9
Glyma.02G271400 Glycine max HOM05D007375 ORTHO05D009293 5.6e-27 124.8 158 56.3
Duzib170G0509 Durio zibethinus HOM05D007375 ORTHO05D009293 7.4e-27 124.4 101 73.3
ECA233G1923 Erigeron canadensis HOM05D000870 ORTHO05D000715 1.3e-26 123.6 98 64.3
Medtr5g086670 Medicago truncatula HOM05D007375 ORTHO05D009293 1.3e-26 123.6 149 57.0
RcHm_v2.0_Chr5g0049271 Rosa chinensis HOM05D007375 ORTHO05D009293 1.3e-26 123.6 104 68.3
EL10Ac7g16260 Beta vulgaris HOM05D007375 ORTHO05D009293 2.1e-26 122.9 149 53.7
CANSAT54G0888 Cannabis sativa HOM05D007375 ORTHO05D009293 2.1e-26 122.9 151 57.6
Psat2g023920 Pisum sativum HOM05D007375 ORTHO05D009293 2.1e-26 122.9 161 55.9
FAN21G2595 Fragaria x ananassa HOM05D007375 ORTHO05D009293 2.8e-26 122.5 101 69.3
HanXRQChr13g0404191 Helianthus annuus HOM05D007375 ORTHO05D009293 2.8e-26 122.5 154 51.3
PSO339G5659 Papaver somniferum HOM05D007375 ORTHO05D009293 2.8e-26 122.5 101 69.3
PSO384G3190 Papaver somniferum HOM05D007375 ORTHO05D009293 2.8e-26 122.5 101 69.3
FvH4_3g26920 Fragaria vesca HOM05D007375 ORTHO05D009293 3.7e-26 122.1 101 69.3
MELO3C017379.2 Cucumis melo HOM05D007375 ORTHO05D009293 4.8e-26 121.7 102 70.6
LjContig00564g0003226 Lotus japonicus HOM05D007375 ORTHO05D009293 4.8e-26 121.7 145 56.6
MD03G1161000 Malus domestica HOM05D007375 ORTHO05D009293 4.8e-26 121.7 167 55.1
Sabra09G0122000 Salix brachista HOM05D007375 ORTHO05D009293 4.8e-26 121.7 154 53.9
CsaV3_1G004520 Cucumis sativus L. HOM05D007375 ORTHO05D009293 8.2e-26 120.9 100 71.0
Lj2E833T0 Lonicera japonica HOM05D007375 ORTHO05D009293 8.2e-26 120.9 104 66.3
Manes.04G063400 Manihot esculenta HOM05D007375 ORTHO05D009293 8.2e-26 120.9 149 57.0
Thecc.09G269700 Theobroma cacao HOM05D007375 ORTHO05D009293 8.2e-26 120.9 156 53.2
ClCG06G014160 Citrullus lanatus HOM05D007375 ORTHO05D009293 1.4e-25 120.2 118 62.7
Sc21g0006670 Simmondsia chinensis HOM05D007375 ORTHO05D009293 1.8e-25 119.8 138 47.8
Cc01_g08020 Coffea canephora HOM05D007375 ORTHO05D009293 2.4e-25 119.4 108 63.9
Potri.009G155700 Populus trichocarpa HOM05D007375 ORTHO05D009293 2.4e-25 119.4 155 53.5
Ciclev10029424m.g Citrus clementina HOM05D007375 ORTHO05D009293 5.3e-25 118.2 124 52.4
Rhsim01G0198300 Rhododendron simsii HOM05D007375 ORTHO05D009293 5.3e-25 118.2 132 53.8
Hma1.2p1_1811F.1_g303540 Hydrangea macrophylla HOM05D007375 ORTHO05D009293 6.9e-25 117.9 82 67.1
PGSC0003DMG401003010 Solanum tuberosum HOM05D007375 ORTHO05D009293 9.0e-25 117.5 98 72.4
AUR62020198 Chenopodium quinoa HOM05D007375 ORTHO05D009293 1.2e-24 117.1 82 70.7
FAN16G0622 Fragaria x ananassa HOM05D007375 ORTHO05D009293 1.2e-24 117.1 82 65.9
Solyc11g071710.2 Solanum lycopersicum HOM05D007375 ORTHO05D009293 1.2e-24 117.1 98 71.4
Sopen11g029380 Solanum pennellii HOM05D007375 ORTHO05D009293 1.2e-24 117.1 98 71.4
Sed0019994 Sechium edule HOM05D007375 ORTHO05D009293 1.5e-24 116.7 100 69.0
ATR0697G291 Amborella trichopoda HOM05D007375 ORTHO05D009293 2.0e-24 116.3 147 53.1
FAN11G1199 Fragaria x ananassa HOM05D007375 ORTHO05D009293 2.0e-24 116.3 82 64.6
vmacro14306 Vaccinium macrocarpon HOM05D007375 ORTHO05D009293 2.0e-24 116.3 133 52.6
Nitab4.5_0002498g0050 Nicotiana tabacum HOM05D007375 ORTHO05D009293 2.6e-24 115.9 98 68.4
Lsat_1_v5_gn_6_49101 Lactuca sativa HOM05D007375 ORTHO05D009293 3.4e-24 115.5 140 51.4
FAN25G3479 Fragaria x ananassa HOM05D000507 ORTHO05D000416 4.5e-24 115.2 82 64.6
QL01p018876 Quercus lobata HOM05D007375 ORTHO05D009293 4.5e-24 115.2 82 78.0
Nitab4.5_0007815g0030 Nicotiana tabacum HOM05D007375 ORTHO05D009293 5.8e-24 114.8 98 68.4
Cfa010224 Carpinus fangiana HOM05D007375 ORTHO05D009293 1.3e-23 113.6 82 65.9
HPP92_000979 Vanilla planifolia HOM05D007375 ORTHO05D009293 1.7e-23 113.2 141 52.5
CAN.G742.2 Capsicum annuum HOM05D007375 ORTHO05D009293 2.2e-23 112.8 152 53.3
Os01g0930000 Oryza sativa ssp. japonica HOM05D007375 ORTHO05D009293 1.9e-22 109.8 82 59.8
arahy.Tifrunner.gnm1.ann1.R1KXAM Arachis hypogaea HOM05D007375 ORTHO05D009293 3.2e-22 109.0 164 51.2
arahy.Tifrunner.gnm1.ann1.MUTN5S Arachis hypogaea HOM05D007375 ORTHO05D009293 4.2e-22 108.6 166 50.6
Zm00001eb370040 Zea mays HOM05D007375 ORTHO05D009293 1.2e-21 107.1 124 46.0
SEGI_05685 Sequoiadendron giganteum HOM05D007375 ORTHO05D009293 1.6e-21 106.7 146 47.3
Mapoly0036s0048 Marchantia polymorpha HOM05D007375 ORTHO05D009293 1.9e-19 99.8 128 50.0
Pp3c7_23060 Physcomitrium patens HOM05D007375 ORTHO05D009293 4.3e-19 98.6 111 55.0
AagrBONN_evm.TU.Sc2ySwM_362.1659 Anthoceros agrestis HOM05D007375 ORTHO05D009293 9.7e-19 97.4 82 56.1
Pp3c11_5080 Physcomitrium patens HOM05D007375 ORTHO05D009293 6.3e-18 94.7 112 53.6
Hund18815 Selenicereus undatus HOM05D007375 ORTHO05D009293 2.0e-16 89.7 206 33.5
unitig_22.g6168 Utricularia gibba HOM05D007375 ORTHO05D009293 2.2e-15 86.3 110 57.3
SGA_v2.0_scaffold7G04014 Striga asiatica HOM05D007375 ORTHO05D009293 8.5e-15 84.3 107 45.8
Eucgr.J00596 Eucalyptus grandis HOM05D007375 ORTHO05D009293 6.1e-13 78.2 40 75.0
Actinidia06350 Actinidia chinensis HOM05D007375 ORTHO05D009293 1.8e-12 76.6 124 45.2
Haze_23611 Corylus avellana HOM05D007375 ORTHO05D009293 7.4e-11 71.2 56 64.3
Oeu048815.1 Olea europaea HOM05D007375 ORTHO05D009293 4.8e-10 68.6 44 75.0
Glyma.14G019800 Glycine max HOM05D007375 ORTHO05D009293 1.4e-09 67.0 70 51.4
Dinv18872 Davidia involucrata HOM05D007375 ORTHO05D009293 1.4e-06 57.0 36 72.2


User provided reference genes

Program Settings