Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 0.0e+00 1100.1 566 100.0
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 1.0e-302 1042.7 566 93.6
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 9.4e-301 1036.2 566 93.5
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 1.7e-297 1025.4 567 93.8
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 1.7e-297 1025.4 567 93.8
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 1.7e-297 1025.4 568 93.8
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 1.1e-296 1022.7 567 93.5
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 4.1e-296 1020.8 566 91.3
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 5.4e-296 1020.4 566 91.2
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 2.7e-295 1018.1 568 93.1
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 2.3e-294 1015.0 566 90.6
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 2.3e-294 1015.0 567 91.7
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 1.9e-293 1011.9 566 90.6
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 4.1e-288 994.2 566 89.6
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 3.1e-283 978.0 567 88.0
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 8.6e-278 959.9 546 89.4
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 1.7e-273 945.7 568 83.5
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 7.1e-248 860.5 552 76.8
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 2.7e-247 858.6 554 77.1
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 3.5e-247 858.2 566 76.9
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 4.6e-247 857.8 552 76.3
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 7.9e-247 857.1 569 76.1
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 1.0e-246 856.7 555 75.5
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 1.3e-246 856.3 565 75.6
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 1.7e-246 855.9 555 75.9
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 2.3e-246 855.5 555 77.5
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 3.9e-246 854.7 557 76.1
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 8.7e-246 853.6 552 75.7
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 1.1e-245 853.2 552 75.9
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 7.3e-245 850.5 566 75.3
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 9.6e-245 850.1 566 75.3
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.6e-244 849.4 566 75.1
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 6.2e-244 847.4 554 76.5
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 5.3e-243 844.3 572 74.0
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 2.0e-242 842.4 555 76.0
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 3.4e-242 841.6 555 75.9
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 7.6e-242 840.5 555 76.0
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 3.8e-241 838.2 563 74.4
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 3.8e-241 838.2 555 75.0
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 4.9e-241 837.8 569 73.1
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 6.4e-241 837.4 566 73.5
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 5.4e-240 834.3 622 68.8
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 5.4e-240 834.3 563 73.9
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 9.3e-240 833.6 562 74.0
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.6e-239 832.8 555 74.2
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 1.3e-238 829.7 560 73.0
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.3e-238 829.7 570 73.9
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 1.3e-238 829.7 569 72.8
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.5e-237 825.5 552 73.6
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 4.3e-237 824.7 552 73.6
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 9.6e-237 823.5 562 73.0
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 9.6e-237 823.5 562 72.8
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.6e-236 822.8 578 72.5
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 2.1e-236 822.4 560 72.1
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 3.7e-236 821.6 565 71.7
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 2.4e-235 818.9 567 71.8
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 2.4e-235 818.9 560 72.5
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 3.1e-235 818.5 559 72.6
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 5.8e-234 814.3 569 71.4
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 5.8e-234 814.3 562 71.5
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 2.9e-233 812.0 562 71.2
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 3.8e-233 811.6 550 72.7
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 6.5e-233 810.8 569 70.8
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 8.4e-233 810.4 553 72.9
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 1.4e-232 809.7 556 72.8
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.2e-232 808.5 553 72.7
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 3.2e-232 808.5 560 73.2
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 4.2e-232 808.1 562 72.4
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 4.2e-232 808.1 584 69.2
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 5.5e-232 807.7 555 72.4
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 7.1e-232 807.4 555 72.4
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 6.0e-231 804.3 560 70.7
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 6.0e-231 804.3 557 70.7
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 7.9e-231 803.9 569 70.3
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 1.3e-230 803.1 557 72.0
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 2.3e-230 802.4 545 74.1
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 2.3e-230 802.4 560 70.9
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 1.9e-229 799.3 534 73.4
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.9e-229 799.3 560 71.2
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 4.3e-229 798.1 564 71.6
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 4.3e-229 798.1 568 70.8
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 7.4e-229 797.3 553 72.9
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 9.6e-229 797.0 561 70.9
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 1.6e-228 796.2 561 71.1
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 2.1e-228 795.8 583 69.0
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 4.8e-228 794.7 565 70.6
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 1.4e-227 793.1 558 70.6
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.8e-227 792.7 558 72.0
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 2.6e-226 788.9 556 70.7
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 7.6e-226 787.3 562 70.8
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 1.3e-225 786.6 571 69.9
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 6.5e-225 784.3 601 67.4
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 8.4e-225 783.9 570 68.8
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.1e-224 783.5 547 71.7
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 1.9e-224 782.7 547 71.7
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 1.2e-223 780.0 552 69.6
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 3.5e-223 778.5 545 71.2
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 3.5e-223 778.5 555 71.5
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 1.1e-221 773.5 555 70.3
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 5.7e-221 771.2 601 66.2
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.1e-219 766.9 617 65.5
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 1.8e-219 766.1 602 66.1
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 2.6e-218 762.3 558 67.9
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.0e-217 760.4 536 69.4
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.9e-217 758.8 552 69.9
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 8.5e-217 757.3 530 71.5
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 2.7e-215 752.3 561 67.6
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 6.1e-215 751.1 554 66.6
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 1.3e-212 743.4 638 62.7
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 4.8e-212 741.5 405 91.6
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 1.1e-211 740.3 552 69.0
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 1.8e-211 739.6 515 69.9
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 3.1e-211 738.8 556 67.3
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 5.3e-211 738.0 405 91.4
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 3.8e-209 731.9 560 65.5
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 3.6e-207 725.3 563 65.4
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 7.9e-207 724.2 553 64.2
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 1.1e-205 720.3 405 89.9
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 1.7e-201 706.4 470 74.5
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 5.0e-201 704.9 586 61.9
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 5.2e-198 694.9 446 76.5
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.1e-192 677.2 553 62.6
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 4.4e-189 665.2 552 60.0
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 7.5e-189 664.5 475 68.8
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 1.7e-188 663.3 501 63.5
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 2.5e-184 649.4 476 68.9
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 4.0e-182 642.1 542 59.2
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 3.6e-175 619.0 558 58.1
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 1.4e-163 580.5 410 70.2
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 9.2e-155 551.2 359 77.4
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 6.6e-145 518.5 364 69.5
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 1.2e-141 507.7 556 48.0
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 1.3e-137 494.2 529 47.4
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 1.4e-126 457.6 327 69.4
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 3.1e-118 429.9 272 76.8
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 1.6e-114 417.5 337 64.1
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.6e-96 357.1 220 77.7
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 6.3e-79 299.3 195 71.8
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 3.6e-74 283.5 197 75.1
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 1.2e-58 231.9 194 60.3
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.7e-53 214.2 141 75.9
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 2.2e-47 194.5 152 61.8
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 3.3e-43 180.6 147 60.5
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 8.9e-41 172.6 117 68.4
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 2.4e-38 164.5 186 48.4
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 1.3e-28 132.1 85 81.2
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 3.8e-23 114.0 83 63.9
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 9.3e-22 109.4 83 66.3
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 4.6e-21 107.1 127 46.5
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 1.3e-20 105.5 77 59.7
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 2.3e-20 104.8 82 63.4
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 1.9e-19 101.7 87 55.2
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 2.9e-07 61.2 62 46.8
Zm00001eb190390 Zea mays HOM05D002544 ORTHO05D007856 1.9e-06 58.5 239 25.9


User provided reference genes

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