Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g01128 Brassica carinata HOM05D004760 ORTHO05D006114 4.1e-69 264.6 136 100.0
BcaC01g02002 Brassica carinata HOM05D004760 ORTHO05D006114 7.8e-68 260.4 136 97.8
C03p69650 Brassica napus HOM05D004760 ORTHO05D006114 7.8e-68 260.4 136 97.8
BolC3t19223H Brassica oleracea HOM05D004760 ORTHO05D006114 7.8e-68 260.4 136 97.8
A06p21630 Brassica napus HOM05D004760 ORTHO05D006114 8.6e-67 256.9 136 96.3
BraA06t25253Z Brassica rapa HOM05D004760 ORTHO05D006114 8.6e-67 256.9 136 96.3
Sp5g16240 Schrenkiella parvula HOM05D004760 ORTHO05D006114 4.3e-66 254.6 136 95.6
Thhalv10002715m.g Eutrema salsugineum HOM05D004760 ORTHO05D006114 3.6e-65 251.5 136 94.1
CARHR150950 Cardamine hirsuta HOM05D004760 ORTHO05D006114 5.4e-61 237.7 136 90.4
C01p34030 Brassica napus HOM05D004760 ORTHO05D006114 2.3e-59 232.3 136 87.5
BolC1t03372H Brassica oleracea HOM05D004760 ORTHO05D006114 2.3e-59 232.3 136 87.5
BcaC09g49679 Brassica carinata HOM05D004760 ORTHO05D006114 4.3e-58 228.0 136 86.0
AL5G23480 Arabidopsis lyrata HOM05D004760 ORTHO05D006114 7.3e-58 227.3 136 87.5
AT3G45020 Arabidopsis thaliana HOM05D004760 ORTHO05D006114 1.6e-57 226.1 136 87.5
Carub.0005s1081 Capsella rubella HOM05D004760 ORTHO05D006114 1.6e-57 226.1 136 88.2
Aa31LG4G14120 Aethionema arabicum HOM05D004760 ORTHO05D006114 5.8e-55 217.6 136 84.6
THA.LOC104810873 Tarenaya hassleriana HOM05D004760 ORTHO05D006114 9.3e-53 210.3 136 80.1
Atru.chr10.822 Acer truncatum HOM05D004760 ORTHO05D006114 2.5e-50 202.2 119 82.4
Cfa010341 Carpinus fangiana HOM05D004760 ORTHO05D006114 4.3e-50 201.4 119 83.2
CsaV3_4G002110 Cucumis sativus L. HOM05D004760 ORTHO05D006114 5.6e-50 201.1 123 81.3
MELO3C033128.2 Cucumis melo HOM05D004760 ORTHO05D006114 7.3e-50 200.7 123 81.3
Dinv29358 Davidia involucrata HOM05D004760 ORTHO05D006114 9.6e-50 200.3 119 81.5
Aqoxy1G01159 Aquilegia oxysepala HOM05D004760 ORTHO05D006114 1.3e-49 199.9 126 77.8
COL.COLO4_03696 Corchorus olitorius HOM05D004760 ORTHO05D006114 1.3e-49 199.9 117 83.8
Haze_23747 Corylus avellana HOM05D004760 ORTHO05D006114 1.3e-49 199.9 119 82.4
Thecc.09G348500 Theobroma cacao HOM05D004760 ORTHO05D006114 1.3e-49 199.9 117 82.9
Atru.chr10.811 Acer truncatum HOM05D004760 ORTHO05D006114 1.6e-49 199.5 117 82.1
Ciclev10002842m.g Citrus clementina HOM05D004760 ORTHO05D006114 1.6e-49 199.5 119 80.7
Cpa.g.sc94.2 Carica papaya HOM05D004760 ORTHO05D006114 2.1e-49 199.1 130 78.5
QL01p015831 Quercus lobata HOM05D004760 ORTHO05D006114 2.1e-49 199.1 123 80.5
Rhsim01G0212000 Rhododendron simsii HOM05D004760 ORTHO05D006114 3.6e-49 198.4 119 79.8
TWI79G1159 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 4.8e-49 198.0 122 77.9
GSVIVG01031504001 Vitis vinifera HOM05D004760 ORTHO05D006114 4.8e-49 198.0 126 76.2
CANSAT80G1575 Cannabis sativa HOM05D004760 ORTHO05D006114 6.2e-49 197.6 117 80.3
Duzib150G1663 Durio zibethinus HOM05D004760 ORTHO05D006114 6.2e-49 197.6 117 82.9
Gohir.D03G137800 Gossypium hirsutum HOM05D004760 ORTHO05D006114 6.2e-49 197.6 119 79.8
Gorai.003G144700 Gossypium raimondii HOM05D004760 ORTHO05D006114 6.2e-49 197.6 119 79.8
CiPaw.14G087800 Carya illinoinensis HOM05D004760 ORTHO05D006114 8.1e-49 197.2 126 76.2
Gohir.A03G030600 Gossypium hirsutum HOM05D004760 ORTHO05D006114 8.1e-49 197.2 117 80.3
ClCG02G021440 Citrullus lanatus HOM05D004760 ORTHO05D006114 1.1e-48 196.8 122 78.7
vmacro14407 Vaccinium macrocarpon HOM05D004760 ORTHO05D006114 1.4e-48 196.4 119 79.0
ECA233G3649 Erigeron canadensis HOM05D004760 ORTHO05D006114 3.1e-48 195.3 117 82.1
TAR636G2244 Trochodendron aralioides HOM05D004760 ORTHO05D006114 3.1e-48 195.3 117 80.3
Manes.15G173300 Manihot esculenta HOM05D004760 ORTHO05D006114 4.0e-48 194.9 119 77.3
BcaB05g23055 Brassica carinata HOM05D004760 ORTHO05D006114 5.3e-48 194.5 134 79.1
CSS0038756 Camellia sinensis var. sinensis HOM05D004760 ORTHO05D006114 5.3e-48 194.5 119 79.8
CAN.G546.10 Capsicum annuum HOM05D004760 ORTHO05D006114 6.9e-48 194.1 124 75.8
Migut.D02262 Erythranthe guttata HOM05D004760 ORTHO05D006114 9.0e-48 193.7 119 76.5
Lsat_1_v5_gn_2_99521 Lactuca sativa HOM05D004760 ORTHO05D006114 9.0e-48 193.7 126 77.0
MSTRG.22442 Avicennia marina HOM05D004760 ORTHO05D006114 1.2e-47 193.4 133 72.2
Lj1C207G1 Lonicera japonica HOM05D000681 ORTHO05D003832 1.2e-47 193.4 117 80.3
PGSC0003DMG400008071 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.2e-47 193.4 121 77.7
Lj3g0014185 Lotus japonicus HOM05D004760 ORTHO05D006114 2.6e-47 192.2 119 77.3
Sopen11g027800 Solanum pennellii HOM05D004760 ORTHO05D006114 2.6e-47 192.2 117 79.5
Eucgr.C00623 Eucalyptus grandis HOM05D004760 ORTHO05D006114 4.5e-47 191.4 121 75.2
Manes.04G015300 Manihot esculenta HOM05D004760 ORTHO05D006114 4.5e-47 191.4 119 76.5
FAN25G2761 Fragaria x ananassa HOM05D004760 ORTHO05D006114 7.6e-47 190.7 119 75.6
Oeu013537.1 Olea europaea HOM05D004760 ORTHO05D006114 7.6e-47 190.7 134 71.6
SalBow3G2862 Salvia bowleyana HOM05D004760 ORTHO05D006114 7.6e-47 190.7 135 70.4
Potri.004G214400 Populus trichocarpa HOM05D004760 ORTHO05D006114 9.9e-47 190.3 117 76.9
Hund01473 Selenicereus undatus HOM05D004760 ORTHO05D006114 9.9e-47 190.3 121 75.2
Oeu014013.2 Olea europaea HOM05D004760 ORTHO05D006114 1.3e-46 189.9 117 77.8
PGSC0003DMG400008072 Solanum tuberosum HOM05D004760 ORTHO05D006114 1.3e-46 189.9 124 75.0
Prupe.6G108700 Prunus persica HOM05D004760 ORTHO05D006114 1.7e-46 189.5 124 72.6
FAN11G0015 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.2e-46 189.1 117 76.1
PGR083G1146 Punica granatum HOM05D004760 ORTHO05D006114 2.2e-46 189.1 122 77.9
PGSC0003DMG400008118 Solanum tuberosum HOM05D004760 ORTHO05D006114 2.2e-46 189.1 124 74.2
TWI31G0427 Tripterygium wilfordii HOM05D004760 ORTHO05D006114 3.8e-46 188.3 123 73.2
PGSC0003DMG400005521 Solanum tuberosum HOM05D004760 ORTHO05D006114 6.4e-46 187.6 121 76.0
Cc01_g10530 Coffea canephora HOM05D004760 ORTHO05D006114 1.1e-45 186.8 130 71.5
Sc06g0010910 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.1e-45 186.8 119 76.5
arahy.Tifrunner.gnm1.ann1.TWBW4W Arachis hypogaea HOM05D004760 ORTHO05D006114 1.4e-45 186.4 127 73.2
MD00G1033500 Malus domestica HOM05D004760 ORTHO05D006114 1.4e-45 186.4 119 75.6
arahy.Tifrunner.gnm1.ann1.HQ4852 Arachis hypogaea HOM05D004760 ORTHO05D006114 1.9e-45 186.0 127 72.4
AUR62034436 Chenopodium quinoa HOM05D004760 ORTHO05D006114 2.4e-45 185.7 119 73.9
FAN21G0726 Fragaria x ananassa HOM05D004760 ORTHO05D006114 2.4e-45 185.7 124 70.2
Glyma.03G099400 Glycine max HOM05D004760 ORTHO05D006114 2.4e-45 185.7 125 73.6
Sc06g0010990 Simmondsia chinensis HOM05D004760 ORTHO05D006114 2.4e-45 185.7 119 75.6
arahy.Tifrunner.gnm1.ann1.KI0H1T Arachis hypogaea HOM05D004760 ORTHO05D006114 4.2e-45 184.9 127 72.4
AUR62014927 Chenopodium quinoa HOM05D004760 ORTHO05D006114 7.1e-45 184.1 117 74.4
Nitab4.5_0002033g0060 Nicotiana tabacum HOM05D004760 ORTHO05D006114 7.1e-45 184.1 130 71.5
DCAR_013702 Daucus carota HOM05D004760 ORTHO05D006114 9.3e-45 183.7 117 77.8
TPR.G21885 Trifolium pratense HOM05D004760 ORTHO05D006114 1.6e-44 183.0 119 73.9
Psat3g094560 Pisum sativum HOM05D004760 ORTHO05D006114 2.1e-44 182.6 121 73.6
Sabra04G0145500 Salix brachista HOM05D004760 ORTHO05D006114 2.1e-44 182.6 131 66.4
Sed0008060 Sechium edule HOM05D004760 ORTHO05D006114 2.1e-44 182.6 135 69.6
SGA_v2.0_scaffold263G45970 Striga asiatica HOM05D004760 ORTHO05D006114 6.0e-44 181.0 117 72.6
VMungo0331G0086 Vigna mungo HOM05D004760 ORTHO05D006114 6.0e-44 181.0 125 72.0
Ca_08122_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 1.0e-43 180.3 120 73.3
Lalb_Chr01g0004501 Lupinus albus HOM05D004760 ORTHO05D006114 1.0e-43 180.3 119 73.1
Ah.15g090630 Amaranthus hybridus HOM05D004760 ORTHO05D006114 1.3e-43 179.9 121 71.1
arahy.Tifrunner.gnm1.ann1.DTBR3Z Arachis hypogaea HOM05D004760 ORTHO05D006114 3.0e-43 178.7 127 70.9
SHI30132 Sapria himalayana HOM05D004760 ORTHO05D006114 3.0e-43 178.7 121 71.1
Actinidia07172 Actinidia chinensis HOM05D004760 ORTHO05D006114 5.1e-43 177.9 105 80.0
MBI18_g16202_MAGBIO Magnolia biondii HOM05D004760 ORTHO05D006114 5.1e-43 177.9 124 73.4
unitig_21.g20191 Utricularia gibba HOM05D001235 ORTHO05D005684 5.1e-43 177.9 126 67.5
HanXRQChr14g0432111 Helianthus annuus HOM05D004760 ORTHO05D006114 6.7e-43 177.6 105 82.9
PGSC0003DMG400035806 Solanum tuberosum HOM05D004760 ORTHO05D006114 8.7e-43 177.2 124 71.0
Medtr7g083650 Medicago truncatula HOM05D004760 ORTHO05D006114 1.1e-42 176.8 119 73.9
Rhsim13G0099000 Rhododendron simsii HOM05D004760 ORTHO05D006114 5.6e-42 174.5 108 76.9
A01p26650 Brassica napus HOM05D004760 ORTHO05D006114 4.8e-41 171.4 98 90.8
BraA01t02596Z Brassica rapa HOM05D004760 ORTHO05D006114 4.8e-41 171.4 98 90.8
FAN16G0053 Fragaria x ananassa HOM05D004760 ORTHO05D006114 8.1e-41 170.6 126 66.7
Haze_20543 Corylus avellana HOM05D004760 ORTHO05D006114 1.8e-40 169.5 119 66.4
PGR102G1962 Punica granatum HOM05D004760 ORTHO05D006114 2.4e-40 169.1 122 69.7
Nn7g38254 Nelumbo nucifera HOM05D004760 ORTHO05D006114 1.2e-39 166.8 98 85.7
ECA240G4818 Erigeron canadensis HOM05D007880 ORTHO05D003386 2.0e-39 166.0 99 83.8
CDE09G0496 Ceratophyllum demersum HOM05D004760 ORTHO05D001676 9.9e-39 163.7 120 68.3
RcHm_v2.0_Chr4g0444611 Rosa chinensis HOM05D004760 ORTHO05D006114 1.3e-38 163.3 122 66.4
Eucgr.B02540 Eucalyptus grandis HOM05D004760 ORTHO05D006114 1.7e-38 162.9 117 66.7
Nitab4.5_0002186g0070 Nicotiana tabacum HOM05D004760 ORTHO05D006114 1.7e-38 162.9 110 73.6
EL10Ac9g22581 Beta vulgaris HOM05D004760 ORTHO05D006114 2.9e-38 162.2 103 72.8
CDE02G4002 Ceratophyllum demersum HOM05D004760 ORTHO05D006114 6.4e-38 161.0 120 67.5
HPP92_025344 Vanilla planifolia HOM05D004760 ORTHO05D006114 1.1e-37 160.2 127 66.1
RcHm_v2.0_Chr5g0057731 Rosa chinensis HOM05D004760 ORTHO05D006114 3.2e-37 158.7 98 77.6
FvH4_3g31090 Fragaria vesca HOM05D004760 ORTHO05D006114 1.2e-36 156.8 98 76.5
ECA238G2603 Erigeron canadensis HOM05D004760 ORTHO05D006114 2.1e-36 156.0 96 79.2
Os09g0549700 Oryza sativa ssp. japonica HOM05D004760 ORTHO05D006114 4.6e-36 154.8 117 66.7
Actinidia13489 Actinidia chinensis HOM05D004760 ORTHO05D006114 1.8e-35 152.9 90 77.8
arahy.Tifrunner.gnm1.ann1.0NB9P2 Arachis hypogaea HOM05D004760 ORTHO05D006114 2.3e-35 152.5 107 69.2
Dinv37316 Davidia involucrata HOM05D004760 ORTHO05D006114 2.3e-35 152.5 98 76.5
Zm00001eb320920 Zea mays HOM05D004760 ORTHO05D006114 7.4e-34 147.5 117 62.4
Medtr1g080050 Medicago truncatula HOM05D004760 ORTHO05D006114 2.4e-32 142.5 119 63.9
PSO801G0746 Papaver somniferum HOM05D004760 ORTHO05D006114 1.5e-31 139.8 126 58.7
Actinidia14009 Actinidia chinensis HOM05D004760 ORTHO05D006114 2.6e-31 139.0 86 76.7
PSO339G3989 Papaver somniferum HOM05D004760 ORTHO05D006114 7.6e-31 137.5 125 57.6
arahy.Tifrunner.gnm1.ann1.PKX4UH Arachis hypogaea HOM05D004760 ORTHO05D006114 1.3e-30 136.7 96 68.8
arahy.Tifrunner.gnm1.ann1.JVX2H3 Arachis hypogaea HOM05D004760 ORTHO05D002586 2.2e-30 136.0 110 60.9
Hund12449 Selenicereus undatus HOM05D004760 ORTHO05D006114 6.5e-30 134.4 84 75.0
Lalb_Chr02g0155851 Lupinus albus HOM05D004760 ORTHO05D006114 2.5e-29 132.5 119 56.3
Ca_06514_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 5.5e-29 131.3 102 65.7
Peaxi162Scf00351g00053 Petunia axillaris HOM05D004760 ORTHO05D006114 2.7e-28 129.0 88 70.5
ATR0152G025 Amborella trichopoda HOM05D004760 ORTHO05D006114 4.6e-28 128.3 107 58.9
CsaV3_6G014220 Cucumis sativus L. HOM05D004760 ORTHO05D006114 6.0e-28 127.9 117 59.0
DCAR_008992 Daucus carota HOM05D004760 ORTHO05D006114 1.3e-27 126.7 117 53.0
arahy.Tifrunner.gnm1.ann1.P1K6TB Arachis hypogaea HOM05D004760 ORTHO05D006114 3.9e-27 125.2 84 73.8
QL11p023169 Quercus lobata HOM05D004760 ORTHO05D006114 8.7e-27 124.0 79 69.6
SEGI_39147 Sequoiadendron giganteum HOM05D004760 ORTHO05D006114 1.9e-26 122.9 116 58.6
VMungo0720G1193 Vigna mungo HOM05D004760 ORTHO05D006114 3.3e-26 122.1 112 53.6
Lj5g0000803 Lotus japonicus HOM05D004760 ORTHO05D006114 9.7e-26 120.6 114 57.9
TPR.G11257 Trifolium pratense HOM05D004760 ORTHO05D006114 9.7e-26 120.6 111 54.1
arahy.Tifrunner.gnm1.ann1.B7429M Arachis hypogaea HOM05D004760 ORTHO05D000042 1.6e-25 119.8 125 56.0
Medtr1g063230 Medicago truncatula HOM05D004760 ORTHO05D006114 8.2e-25 117.5 113 51.3
Phvul.007G219200 Phaseolus vulgaris HOM05D004760 ORTHO05D006114 1.1e-24 117.1 117 50.4
Psat6g074200 Pisum sativum HOM05D004760 ORTHO05D006114 1.8e-24 116.3 113 50.4
Sc20g0005490 Simmondsia chinensis HOM05D004760 ORTHO05D006114 1.8e-24 116.3 118 52.5
Glyma.10G055400 Glycine max HOM05D004760 ORTHO05D006114 3.1e-24 115.5 115 53.0
SHI02979 Sapria himalayana HOM05D004760 ORTHO05D006114 3.1e-24 115.5 88 58.0
EL10Ac7g16630 Beta vulgaris HOM05D004760 ORTHO05D039006 3.4e-23 112.1 129 49.6
Ca_11503_v3 Cicer arietinum L. HOM05D004760 ORTHO05D006114 7.6e-23 110.9 103 55.3
AUR62040351 Chenopodium quinoa HOM05D004760 ORTHO05D039006 1.9e-21 106.3 131 45.8
MELO3C026909.2 Cucumis melo HOM05D004760 ORTHO05D006114 5.5e-21 104.8 76 73.7
ECA233G6109 Erigeron canadensis HOM05D000473 ORTHO05D001219 7.2e-21 104.4 61 83.6
Solyc11g069080.3 Solanum lycopersicum HOM05D004760 ORTHO05D006114 3.4e-15 85.5 53 71.7
AUR62042505 Chenopodium quinoa HOM05D004760 ORTHO05D138125 5.7e-10 68.2 77 48.1
Nn7g38187 Nelumbo nucifera HOM05D004760 ORTHO05D006114 4.1e-08 62.0 35 85.7
Lalb_Chr02g0155971 Lupinus albus HOM05D004760 ORTHO05D006114 2.6e-07 59.3 66 43.9
Lalb_Chr18g0045811 Lupinus albus HOM05D004009 ORTHO05D004617 1.3e-06 57.0 111 36.9
Hma1.2p1_0472F.1_g159660 Hydrangea macrophylla HOM05D004009 ORTHO05D004617 3.8e-06 55.5 111 33.3
TPR.G4101 Trifolium pratense HOM05D004009 ORTHO05D004617 5.0e-06 55.1 111 34.2


User provided reference genes

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