Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00896 Brassica carinata HOM05D005903 ORTHO05D007293 1.9e-184 649.0 330 100.0
BolC3t19474H Brassica oleracea HOM05D005903 ORTHO05D007293 1.4e-174 616.3 330 93.6
BcaC01g01793 Brassica carinata HOM05D005903 ORTHO05D007293 6.7e-174 614.0 330 93.0
C03p71840 Brassica napus HOM05D005903 ORTHO05D007293 6.7e-174 614.0 330 93.0
BolC8t51059H Brassica oleracea HOM05D005903 ORTHO05D007293 6.7e-174 614.0 330 93.9
BraA06t25085Z Brassica rapa HOM05D005903 ORTHO05D007293 1.5e-173 612.8 331 93.7
A06p19990 Brassica napus HOM05D005903 ORTHO05D007293 9.7e-173 610.1 331 93.4
C08p34580 Brassica napus HOM05D005903 ORTHO05D007293 2.2e-172 609.0 330 93.0
BcaC07g40489 Brassica carinata HOM05D005903 ORTHO05D007293 4.8e-172 607.8 330 92.7
BraA09t40620Z Brassica rapa HOM05D005903 ORTHO05D007293 8.2e-172 607.1 330 92.1
A09p51850 Brassica napus HOM05D005903 ORTHO05D007293 1.6e-170 602.8 330 91.5
Thhalv10011094m.g Eutrema salsugineum HOM05D005903 ORTHO05D007293 9.4e-168 593.6 333 90.1
AT3G47630 Arabidopsis thaliana HOM05D005903 ORTHO05D007293 2.3e-166 589.0 330 89.4
Carub.0005s1376 Capsella rubella HOM05D005903 ORTHO05D007293 1.5e-165 586.3 330 89.1
CARHR156310 Cardamine hirsuta HOM05D005903 ORTHO05D007293 1.5e-165 586.3 333 87.7
AL5G26920 Arabidopsis lyrata HOM05D005903 ORTHO05D007293 8.3e-164 580.5 330 88.8
Sp1g31680 Schrenkiella parvula HOM05D005903 ORTHO05D007293 2.8e-159 565.5 330 84.5
Aa31LG9G16250 Aethionema arabicum HOM05D005903 ORTHO05D007293 9.2e-155 550.4 330 82.7
Cpa.g.sc30.99 Carica papaya HOM05D005903 ORTHO05D007293 1.2e-138 496.9 330 74.5
THA.LOC104812245 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 1.4e-134 483.4 363 69.1
THA.LOC104824626 Tarenaya hassleriana HOM05D005903 ORTHO05D007293 6.8e-134 481.1 363 69.1
Eucgr.A00192 Eucalyptus grandis HOM05D005903 ORTHO05D007293 1.5e-133 479.9 329 71.4
Dinv07001 Davidia involucrata HOM05D005903 ORTHO05D007293 3.4e-133 478.8 325 72.6
Potri.001G076200 Populus trichocarpa HOM05D005903 ORTHO05D007293 3.4e-133 478.8 330 73.0
QL11p012010 Quercus lobata HOM05D005903 ORTHO05D007293 3.4e-133 478.8 330 71.8
Atru.chr10.296 Acer truncatum HOM05D005903 ORTHO05D007293 1.7e-132 476.5 328 70.7
TAR624G0428 Trochodendron aralioides HOM05D005903 ORTHO05D007293 1.3e-129 466.8 330 70.3
CiPaw.09G138500 Carya illinoinensis HOM05D005903 ORTHO05D007293 1.7e-129 466.5 323 71.8
Thecc.02G003100 Theobroma cacao HOM05D005903 ORTHO05D007293 1.7e-129 466.5 330 71.2
Manes.03G070940 Manihot esculenta HOM05D005903 ORTHO05D007293 3.0e-129 465.7 330 70.3
Nn7g38356 Nelumbo nucifera HOM05D005903 ORTHO05D007293 3.3e-128 462.2 324 71.6
Hma1.2p1_0088F.1_g045276 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 9.5e-128 460.7 330 69.4
Nitab4.5_0010610g0030 Nicotiana tabacum HOM05D005903 ORTHO05D007293 1.2e-127 460.3 330 66.4
PGR044G2521 Punica granatum HOM05D005903 ORTHO05D007293 1.2e-127 460.3 331 67.4
FAN11G1857 Fragaria x ananassa HOM05D005903 ORTHO05D007293 8.9e-126 454.1 331 69.8
FAN16G3015 Fragaria x ananassa HOM05D005903 ORTHO05D007293 8.9e-126 454.1 331 69.2
Gohir.A11G047300 Gossypium hirsutum HOM05D005903 ORTHO05D007293 8.9e-126 454.1 331 68.6
FvH4_3g13050 Fragaria vesca HOM05D005903 ORTHO05D007293 2.0e-125 453.0 331 69.8
Nitab4.5_0000844g0290 Nicotiana tabacum HOM05D005903 ORTHO05D007293 5.8e-125 451.4 330 64.8
Gohir.D11G050900 Gossypium hirsutum HOM05D005903 ORTHO05D007293 7.6e-125 451.1 331 68.6
RcHm_v2.0_Chr5g0021241 Rosa chinensis HOM05D005903 ORTHO05D007293 9.9e-125 450.7 331 69.5
FAN21G0687 Fragaria x ananassa HOM05D005903 ORTHO05D007293 1.7e-124 449.9 331 68.6
Gorai.007G055300 Gossypium raimondii HOM05D005903 ORTHO05D007293 2.2e-124 449.5 331 68.3
GSVIVG01012154001 Vitis vinifera HOM05D005903 ORTHO05D007293 2.9e-124 449.1 330 68.8
FAN25G2454 Fragaria x ananassa HOM05D005903 ORTHO05D007293 8.4e-124 447.6 331 68.9
Solyc02g081840.4 Solanum lycopersicum HOM05D005903 ORTHO05D007293 1.1e-123 447.2 330 65.2
PGSC0003DMG400007316 Solanum tuberosum HOM05D005903 ORTHO05D007293 2.4e-123 446.0 330 64.8
vmacro03560 Vaccinium macrocarpon HOM05D005903 ORTHO05D007293 2.4e-123 446.0 346 65.0
CANSAT35G1866 Cannabis sativa HOM05D005903 ORTHO05D007293 7.1e-123 444.5 326 67.5
EL10Ac5g11217 Beta vulgaris HOM05D005903 ORTHO05D007293 1.2e-122 443.7 330 65.5
CAN.G809.52 Capsicum annuum HOM05D005903 ORTHO05D007293 7.8e-122 441.0 330 64.2
Lj4g0014401 Lotus japonicus HOM05D005903 ORTHO05D007293 1.7e-121 439.9 320 68.4
Dinv26323 Davidia involucrata HOM05D005903 ORTHO05D007293 5.1e-121 438.3 298 72.5
MD05G1245400 Malus domestica HOM05D005903 ORTHO05D007293 3.3e-120 435.6 332 66.9
AUR62036920 Chenopodium quinoa HOM05D005903 ORTHO05D007293 4.3e-120 435.3 330 64.5
Migut.M02015 Erythranthe guttata HOM05D005903 ORTHO05D007293 9.6e-120 434.1 330 64.5
Medtr4g094760 Medicago truncatula HOM05D005903 ORTHO05D007293 1.6e-119 433.3 330 63.9
ClCG01G025750 Citrullus lanatus HOM05D005903 ORTHO05D007293 3.6e-119 432.2 332 65.4
CsaV3_6G052990 Cucumis sativus L. HOM05D005903 ORTHO05D007293 1.1e-118 430.6 332 64.5
MELO3C007010.2 Cucumis melo HOM05D005903 ORTHO05D007293 1.8e-118 429.9 332 64.2
Cc09_g05110 Coffea canephora HOM05D005903 ORTHO05D007293 4.0e-118 428.7 323 64.7
Lsat_1_v5_gn_1_24420 Lactuca sativa HOM05D005903 ORTHO05D007293 1.2e-117 427.2 325 66.5
Sabra01G0053000 Salix brachista HOM05D005903 ORTHO05D007293 1.2e-117 427.2 333 67.6
Migut.G01043 Erythranthe guttata HOM05D005903 ORTHO05D007293 3.4e-117 425.6 323 64.4
Glyma.08G089000 Glycine max HOM05D005903 ORTHO05D007293 7.6e-117 424.5 323 65.3
Glyma.05G134300 Glycine max HOM05D005903 ORTHO05D007293 1.7e-116 423.3 320 65.6
VMungo0251G1440 Vigna mungo HOM05D005903 ORTHO05D007293 6.4e-116 421.4 320 65.3
Cc00_g27340 Coffea canephora HOM05D005903 ORTHO05D007293 1.9e-115 419.9 323 64.7
HanXRQChr12g0369311 Helianthus annuus HOM05D005903 ORTHO05D007293 1.9e-115 419.9 327 64.8
PSO675G2427 Papaver somniferum HOM05D005903 ORTHO05D007293 4.2e-115 418.7 326 62.3
Ca_18231_v3 Cicer arietinum L. HOM05D005903 ORTHO05D007293 9.3e-115 417.5 320 63.8
TPR.G23817 Trifolium pratense HOM05D005903 ORTHO05D007293 1.2e-114 417.2 328 62.2
CSS0034787 Camellia sinensis var. sinensis HOM05D005903 ORTHO05D007293 3.5e-114 415.6 314 66.9
Duzib052G0373 Durio zibethinus HOM05D005903 ORTHO05D007293 6.0e-114 414.8 352 63.4
Rhsim05G0003000 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.0e-113 414.1 383 57.4
DCAR_003756 Daucus carota HOM05D005903 ORTHO05D007293 1.3e-113 413.7 368 57.6
Dinv01020 Davidia involucrata HOM05D005903 ORTHO05D007293 2.3e-113 412.9 322 64.9
ECA247G0018 Erigeron canadensis HOM05D005903 ORTHO05D007293 3.0e-113 412.5 329 62.9
Hund09980 Selenicereus undatus HOM05D005903 ORTHO05D007293 5.1e-113 411.8 377 56.5
Rhsim13G0219000 Rhododendron simsii HOM05D005903 ORTHO05D007293 1.6e-111 406.8 330 63.3
Hma1.2p1_0088F.1_g045273 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 2.4e-110 402.9 342 62.6
Hma1.2p1_1011F.1_g247520 Hydrangea macrophylla HOM05D005903 ORTHO05D007293 9.0e-110 401.0 342 62.3
Sed0025041 Sechium edule HOM05D005903 ORTHO05D007293 1.2e-109 400.6 322 63.4
Ciclev10016117m.g Citrus clementina HOM05D005903 ORTHO05D007293 2.0e-109 399.8 292 67.5
ATR0605G282 Amborella trichopoda HOM05D005903 ORTHO05D007293 7.6e-109 397.9 331 61.0
TWI63G1157 Tripterygium wilfordii HOM05D005903 ORTHO05D007293 1.3e-108 397.1 332 61.1
Aqoxy7G00859 Aquilegia oxysepala HOM05D005903 ORTHO05D007293 7.1e-107 391.3 321 61.4
arahy.Tifrunner.gnm1.ann1.7A7AL1 Arachis hypogaea HOM05D005903 ORTHO05D007293 1.9e-104 383.3 330 58.5
Haze_05254 Corylus avellana HOM05D005903 ORTHO05D007293 1.4e-99 367.1 323 61.6
PSO675G2002 Papaver somniferum HOM05D005903 ORTHO05D007293 1.3e-97 360.5 326 55.5
Lj1C1150G3 Lonicera japonica HOM05D005903 ORTHO05D007293 3.0e-97 359.4 292 63.7
Rhsim07G0106900 Rhododendron simsii HOM05D005903 ORTHO05D007293 3.0e-97 359.4 330 58.2
SEGI_28167 Sequoiadendron giganteum HOM05D005903 ORTHO05D007293 3.9e-97 359.0 328 54.9
Psat7g087640 Pisum sativum HOM05D005903 ORTHO05D007293 6.7e-97 358.2 247 68.8
Prupe.7G025500 Prunus persica HOM05D005903 ORTHO05D007293 2.5e-96 356.3 223 77.1
HPP92_021274 Vanilla planifolia HOM05D005903 ORTHO05D007293 2.4e-94 349.7 322 56.2
SGA_v2.0_scaffold31G12765 Striga asiatica HOM05D005903 ORTHO05D007293 2.2e-92 343.2 326 55.5
AUR62032162 Chenopodium quinoa HOM05D005903 ORTHO05D007293 7.1e-91 338.2 276 62.3
Sopen02g026460 Solanum pennellii HOM05D005903 ORTHO05D007293 6.1e-90 335.1 255 65.9
CDE06G1059 Ceratophyllum demersum HOM05D005903 ORTHO05D007293 2.3e-89 333.2 330 54.8
Phvul.002G188100 Phaseolus vulgaris HOM05D005903 ORTHO05D007293 5.1e-89 332.0 263 64.3
Prupe.4G118500 Prunus persica HOM05D005903 ORTHO05D007293 3.7e-87 325.9 244 69.7
Peaxi162Scf00036g02217 Petunia axillaris HOM05D005903 ORTHO05D007293 4.8e-87 325.5 294 55.4
COL.COLO4_05791 Corchorus olitorius HOM05D005903 ORTHO05D007293 9.0e-86 321.2 193 78.2
arahy.Tifrunner.gnm1.ann1.STP4KF Arachis hypogaea HOM05D005903 ORTHO05D007293 9.7e-80 301.2 324 50.3
Os11g0549650 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 1.4e-78 297.4 210 66.2
Zm00001eb201720 Zea mays HOM05D005903 ORTHO05D007293 2.6e-77 293.1 210 66.7
Lalb_Chr07g0188231 Lupinus albus HOM05D005903 ORTHO05D007293 3.4e-77 292.7 183 72.7
SMO367G0859 Selaginella moellendorffii HOM05D005903 ORTHO05D007293 5.1e-73 278.9 336 44.3
AagrBONN_evm.TU.Sc2ySwM_344.2832 Anthoceros agrestis HOM05D005903 ORTHO05D007293 1.5e-72 277.3 330 45.5
Mapoly0019s0171 Marchantia polymorpha HOM05D005903 ORTHO05D007293 1.1e-70 271.2 331 45.6
Pp3c7_4190 Physcomitrium patens HOM05D005903 ORTHO05D007293 7.0e-70 268.5 332 43.7
Oeu056062.1 Olea europaea HOM05D005903 ORTHO05D007293 8.5e-68 261.5 165 70.3
unitig_46.g18341 Utricularia gibba HOM05D005903 ORTHO05D007293 5.0e-60 235.7 330 44.5
Gohir.D11G050975 Gossypium hirsutum HOM05D005903 ORTHO05D007293 4.7e-58 229.2 170 67.6
Os11g0549690 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 5.7e-56 222.2 151 65.6
Sc04g0004120 Simmondsia chinensis HOM05D005903 ORTHO05D007293 1.7e-55 220.7 123 74.8
Sc04g0004130 Simmondsia chinensis HOM05D005903 ORTHO05D007293 2.1e-42 177.2 166 59.0
CARHR106840 Cardamine hirsuta HOM05D005903 ORTHO05D007293 1.5e-40 171.0 120 76.7
Cfa024540 Carpinus fangiana HOM05D005903 ORTHO05D007293 2.2e-39 167.2 315 34.9
Haze_05249 Corylus avellana HOM05D005903 ORTHO05D007293 8.3e-39 165.2 197 52.8
CBR_g23454 Chara braunii HOM05D001496 ORTHO05D007453 9.2e-38 161.8 343 32.1
Cre10.g436900 Chlamydomonas reinhardtii HOM05D005903 ORTHO05D007293 2.0e-37 160.6 315 34.6
MCO11G061 Micromonas commoda HOM05D005903 ORTHO05D007293 1.3e-36 157.9 353 30.3
Migut.O00470 Erythranthe guttata HOM05D005903 ORTHO05D007293 3.1e-33 146.7 144 55.6
PRCOL_00001260 Prasinoderma coloniale HOM05D005903 ORTHO05D007293 3.7e-31 139.8 354 29.7
Lalb_Chr07g0188221 Lupinus albus HOM05D005903 ORTHO05D007293 8.3e-31 138.7 153 51.6
Glyma.08G193350 Glycine max HOM05D005903 ORTHO05D007293 3.6e-18 96.7 60 75.0
Os05g0295700 Oryza sativa ssp. japonica HOM05D005903 ORTHO05D007293 6.8e-17 92.4 58 65.5
COL.COLO4_05792 Corchorus olitorius HOM05D005903 ORTHO05D007293 2.4e-14 84.0 71 62.0
CAN.G508.15 Capsicum annuum HOM05D005903 ORTHO05D007293 6.0e-13 79.3 242 25.6
SHI32711 Sapria himalayana HOM05D005903 ORTHO05D007293 8.6e-12 75.5 67 50.7
CBR_g8146 Chara braunii HOM05D005903 ORTHO05D000048 8.9e-09 65.5 66 47.0
Oeu056063.2 Olea europaea HOM05D007234 ORTHO05D008488 2.0e-08 64.3 65 53.8
SHI32710 Sapria himalayana HOM05D005903 ORTHO05D007293 7.1e-06 55.8 85 48.2
Cfa001138 Carpinus fangiana HOM05D000398 ORTHO05D000551 9.3e-06 55.5 58 53.4


User provided reference genes

Program Settings