Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00871 Brassica carinata HOM05D007939 ORTHO05D010027 7.8e-25 116.3 58 100.0
C03p72070 Brassica napus HOM05D007939 ORTHO05D010027 8.6e-24 112.8 58 96.6
BolC3t19505H Brassica oleracea HOM05D007939 ORTHO05D010027 8.6e-24 112.8 58 96.6
BraA06t25058Z Brassica rapa HOM05D007939 ORTHO05D010027 8.6e-24 112.8 58 96.6
Thhalv10010893m.g Eutrema salsugineum HOM05D007939 ORTHO05D010027 2.8e-22 107.8 58 91.4
Sp5g14120 Schrenkiella parvula HOM05D007939 ORTHO05D010027 6.2e-22 106.7 58 91.4
CARHR156540 Cardamine hirsuta HOM05D007939 ORTHO05D010027 1.0e-21 105.9 58 89.7
AL5G27140 Arabidopsis lyrata HOM05D007939 ORTHO05D010027 3.1e-21 104.4 58 87.9
Carub.0005s1396 Capsella rubella HOM05D007939 ORTHO05D010027 4.4e-20 100.5 58 86.2
BcaC01g01771 Brassica carinata HOM05D007939 ORTHO05D010027 1.9e-18 95.1 45 100.0
Prupe.5G181400 Prunus persica HOM05D007939 ORTHO05D010027 1.9e-18 95.1 56 78.6
Ciclev10023252m.g Citrus clementina HOM05D007939 ORTHO05D010027 3.2e-18 94.4 58 75.9
Nn4g22962 Nelumbo nucifera HOM05D007939 ORTHO05D010027 9.2e-18 92.8 58 74.1
Nn3g17057 Nelumbo nucifera HOM05D007939 ORTHO05D010027 1.2e-17 92.4 58 74.1
Potri.012G074300 Populus trichocarpa HOM05D007939 ORTHO05D010027 2.0e-17 91.7 56 75.0
Aa31LG4G16500 Aethionema arabicum HOM05D007939 ORTHO05D010027 2.7e-17 91.3 45 95.6
Cfa019042 Carpinus fangiana HOM05D007939 ORTHO05D010027 6.0e-17 90.1 56 73.2
Manes.14G071800 Manihot esculenta HOM05D007939 ORTHO05D010027 7.8e-17 89.7 58 72.4
Sed0024093 Sechium edule HOM05D007939 ORTHO05D010027 7.8e-17 89.7 56 71.4
CiPaw.11G033900 Carya illinoinensis HOM05D007939 ORTHO05D010027 1.0e-16 89.4 54 75.9
Gohir.A12G276700 Gossypium hirsutum HOM05D007939 ORTHO05D010027 1.3e-16 89.0 58 74.1
Gohir.D12G277700 Gossypium hirsutum HOM05D007939 ORTHO05D010027 1.3e-16 89.0 58 74.1
Gorai.008G298400 Gossypium raimondii HOM05D007939 ORTHO05D010027 1.3e-16 89.0 58 74.1
BcaB02g10687 Brassica carinata HOM05D007939 ORTHO05D010027 1.7e-16 88.6 45 91.1
CsaV3_1G008140 Cucumis sativus L. HOM05D007939 ORTHO05D010027 2.3e-16 88.2 56 71.4
Rhsim08G0164200 Rhododendron simsii HOM05D007939 ORTHO05D010027 2.3e-16 88.2 51 78.4
Lj9A455T57 Lonicera japonica HOM05D007939 ORTHO05D010027 8.6e-16 86.3 55 70.9
Glyma.05G032500 Glycine max HOM05D007939 ORTHO05D010027 1.1e-15 85.9 56 71.4
MD14G1189000 Malus domestica HOM05D007939 ORTHO05D010027 1.1e-15 85.9 57 71.9
C03p66950 Brassica napus HOM05D007939 ORTHO05D010027 1.5e-15 85.5 52 78.8
CSS0025662 Camellia sinensis var. sinensis HOM05D007939 ORTHO05D010027 1.5e-15 85.5 45 84.4
DCAR_021553 Daucus carota HOM05D007939 ORTHO05D010027 1.5e-15 85.5 55 70.9
RcHm_v2.0_Chr7g0179931 Rosa chinensis HOM05D007939 ORTHO05D010027 1.5e-15 85.5 53 71.7
Thecc.03G001700 Theobroma cacao HOM05D007939 ORTHO05D010027 1.5e-15 85.5 55 70.9
Atru.chr9.2381 Acer truncatum HOM05D007939 ORTHO05D010027 1.9e-15 85.1 56 75.0
Rhsim12G0160700 Rhododendron simsii HOM05D007939 ORTHO05D010027 2.5e-15 84.7 54 75.9
Hund02701 Selenicereus undatus HOM05D007939 ORTHO05D010027 3.3e-15 84.3 56 69.6
BolC3t18968H Brassica oleracea HOM05D007939 ORTHO05D010027 4.3e-15 84.0 45 86.7
CSS0005245 Camellia sinensis var. sinensis HOM05D007939 ORTHO05D010027 4.3e-15 84.0 45 82.2
ClCG01G014170 Citrullus lanatus HOM05D007939 ORTHO05D010027 5.6e-15 83.6 45 84.4
Cc04_g16150 Coffea canephora HOM05D007939 ORTHO05D010027 5.6e-15 83.6 49 75.5
MELO3C002231.2 Cucumis melo HOM05D007939 ORTHO05D010027 5.6e-15 83.6 45 84.4
Lj4g0008013 Lotus japonicus HOM05D007939 ORTHO05D010027 5.6e-15 83.6 56 67.9
Lalb_Chr13g0298021 Lupinus albus HOM05D007939 ORTHO05D010027 9.5e-15 82.8 56 66.1
Oeu041591.1 Olea europaea HOM05D007939 ORTHO05D010027 1.2e-14 82.4 50 78.0
Phvul.003G196000 Phaseolus vulgaris HOM05D007939 ORTHO05D010027 1.2e-14 82.4 56 69.6
Haze_07419 Corylus avellana HOM05D007939 ORTHO05D010027 1.6e-14 82.0 49 73.5
COL.COLO4_05795 Corchorus olitorius HOM05D007939 ORTHO05D010027 2.1e-14 81.6 45 80.0
Solyc03g113670.4 Solanum lycopersicum HOM05D007939 ORTHO05D010027 2.8e-14 81.3 50 68.0
Sabra12G0052700 Salix brachista HOM05D007939 ORTHO05D010027 3.6e-14 80.9 45 80.0
HanXRQChr09g0271581 Helianthus annuus HOM05D007939 ORTHO05D010027 4.7e-14 80.5 55 69.1
CAN.G853.35 Capsicum annuum HOM05D007939 ORTHO05D010027 6.2e-14 80.1 53 66.0
Peaxi162Scf00017g02235 Petunia axillaris HOM05D007939 ORTHO05D010027 8.1e-14 79.7 53 66.0
Lsat_1_v5_gn_4_74421 Lactuca sativa HOM05D007939 ORTHO05D010027 1.4e-13 79.0 58 63.8
Sabra15G0093500 Salix brachista HOM05D007939 ORTHO05D010027 1.4e-13 79.0 45 75.6
Nitab4.5_0000642g0220 Nicotiana tabacum HOM05D007939 ORTHO05D010027 2.3e-13 78.2 49 67.3
SalBow3G2524 Salvia bowleyana HOM05D007939 ORTHO05D010027 3.1e-13 77.8 60 61.7
Nitab4.5_0002875g0050 Nicotiana tabacum HOM05D007939 ORTHO05D010027 4.0e-13 77.4 55 63.6
PSO591G0029 Papaver somniferum HOM05D007939 ORTHO05D010027 5.2e-13 77.0 51 70.6
Solyc06g071260.4 Solanum lycopersicum HOM05D007939 ORTHO05D010027 5.2e-13 77.0 57 68.4
PGSC0003DMG400033058 Solanum tuberosum HOM05D007939 ORTHO05D010027 1.2e-12 75.9 57 66.7
EL10Ac5g10844 Beta vulgaris HOM05D007939 ORTHO05D010027 1.5e-12 75.5 49 73.5
Migut.D01894 Erythranthe guttata HOM05D007939 ORTHO05D010027 1.5e-12 75.5 56 66.1
SGA_v2.0_scaffold7G04104 Striga asiatica HOM05D007939 ORTHO05D010027 1.5e-12 75.5 41 80.5
EL10Ac5g10864 Beta vulgaris HOM05D007939 ORTHO05D010027 2.6e-12 74.7 45 80.0
Oeu046758.2 Olea europaea HOM05D007939 ORTHO05D010027 4.4e-12 73.9 40 80.0
EL10Ac5g11334 Beta vulgaris HOM05D007939 ORTHO05D010027 7.5e-12 73.2 47 74.5
Nitab4.5_0002101g0080 Nicotiana tabacum HOM05D007939 ORTHO05D010027 1.7e-11 72.0 44 79.5
Medtr4g107140 Medicago truncatula HOM05D007939 ORTHO05D010027 2.2e-11 71.6 45 73.3
CAN.G628.63 Capsicum annuum HOM05D007939 ORTHO05D010027 2.9e-11 71.2 45 77.8
Nitab4.5_0000003g0340 Nicotiana tabacum HOM05D007939 ORTHO05D010027 3.7e-11 70.9 46 73.9
Os03g0824500 Oryza sativa ssp. japonica HOM05D007939 ORTHO05D010027 1.1e-10 69.3 46 71.7
ATR0712G037 Amborella trichopoda HOM05D007939 ORTHO05D010027 4.1e-10 67.4 40 77.5
unitig_21.g20455 Utricularia gibba HOM05D002627 ORTHO05D010027 1.2e-09 65.9 58 51.7
Zm00001eb302590 Zea mays HOM05D007939 ORTHO05D010027 1.0e-08 62.8 39 71.8
Zm00001eb151290 Zea mays HOM05D007939 ORTHO05D010027 1.7e-08 62.0 40 70.0
Zm00001eb123900 Zea mays HOM05D007939 ORTHO05D010027 3.0e-08 61.2 40 67.5
QL10p013938 Quercus lobata HOM05D007939 ORTHO05D010027 5.1e-08 60.5 44 61.4
Peaxi162Scf00689g00418 Petunia axillaris HOM05D007939 ORTHO05D010027 5.6e-07 57.0 57 50.9


User provided reference genes

Program Settings