Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00870 Brassica carinata HOM05D006327 ORTHO05D007952 1.3e-177 626.3 332 100.0
A06p19780 Brassica napus HOM05D006327 ORTHO05D007952 3.0e-153 545.4 336 89.3
BraA06t25057Z Brassica rapa HOM05D006327 ORTHO05D007952 3.0e-153 545.4 336 89.3
BcaC01g01770 Brassica carinata HOM05D006327 ORTHO05D007952 1.6e-143 513.1 340 85.9
BolC3t19506H Brassica oleracea HOM05D006327 ORTHO05D007952 1.6e-143 513.1 340 85.9
C03p72080 Brassica napus HOM05D006327 ORTHO05D007952 3.4e-141 505.4 340 85.0
Sp5g14110 Schrenkiella parvula HOM05D006327 ORTHO05D007952 6.4e-140 501.1 338 84.3
AL5G27170 Arabidopsis lyrata HOM05D006327 ORTHO05D007952 1.0e-121 440.7 335 76.4
AT3G47850 Arabidopsis thaliana HOM05D006327 ORTHO05D007952 1.1e-115 420.6 335 74.9
Carub.0005s1399 Capsella rubella HOM05D006327 ORTHO05D007952 4.2e-115 418.7 336 74.1
BolC1t03192H Brassica oleracea HOM05D006327 ORTHO05D007952 6.3e-111 404.8 335 73.1
Thhalv10010485m.g Eutrema salsugineum HOM05D006327 ORTHO05D007952 1.9e-104 383.3 279 79.2
CARHR156550 Cardamine hirsuta HOM05D006327 ORTHO05D007952 5.7e-104 381.7 336 71.4
BcaB05g23082 Brassica carinata HOM05D006327 ORTHO05D007952 1.4e-86 323.9 310 65.2
THA.LOC104818247 Tarenaya hassleriana HOM05D006327 ORTHO05D007952 9.4e-83 311.2 348 58.0
Aa31LG4G16510 Aethionema arabicum HOM05D006327 ORTHO05D007952 7.2e-75 285.0 365 52.3
Eucgr.B00389 Eucalyptus grandis HOM05D006327 ORTHO05D007952 1.2e-53 214.5 373 45.8
GSVIVG01008091001 Vitis vinifera HOM05D006327 ORTHO05D007952 3.9e-52 209.5 379 44.9
Cfa019028 Carpinus fangiana HOM05D006327 ORTHO05D007952 2.5e-51 206.8 374 44.4
RcHm_v2.0_Chr7g0180141 Rosa chinensis HOM05D006327 ORTHO05D007952 1.2e-50 204.5 371 45.6
CSS0041426 Camellia sinensis var. sinensis HOM05D006327 ORTHO05D007952 6.2e-50 202.2 377 43.5
FAN04G1419 Fragaria x ananassa HOM05D006327 ORTHO05D007952 6.2e-50 202.2 374 43.9
Haze_07403 Corylus avellana HOM05D006327 ORTHO05D007952 8.0e-50 201.8 372 42.2
Thecc.K0000500 Theobroma cacao HOM05D006327 ORTHO05D007952 1.4e-49 201.1 365 43.8
Duzib205G1023 Durio zibethinus HOM05D006327 ORTHO05D007952 1.8e-49 200.7 363 44.9
Manes.14G072700 Manihot esculenta HOM05D006327 ORTHO05D007952 3.1e-49 199.9 391 40.9
FAN13G1795 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.2e-48 198.0 375 43.5
AUR62008321 Chenopodium quinoa HOM05D006327 ORTHO05D007952 2.0e-48 197.2 363 44.4
Gohir.A13G087700 Gossypium hirsutum HOM05D006327 ORTHO05D007952 2.0e-48 197.2 362 43.6
Ciclev10020740m.g Citrus clementina HOM05D006327 ORTHO05D007952 2.6e-48 196.8 374 42.2
CsaV3_1G001980 Cucumis sativus L. HOM05D006327 ORTHO05D007952 1.3e-47 194.5 380 41.8
QL10p014464 Quercus lobata HOM05D006327 ORTHO05D007952 1.3e-47 194.5 376 42.6
Gorai.010G139000 Gossypium raimondii HOM05D006327 ORTHO05D007952 2.9e-47 193.4 362 43.4
MD06G1184600 Malus domestica HOM05D006327 ORTHO05D007952 4.9e-47 192.6 374 43.0
Gohir.D13G092100 Gossypium hirsutum HOM05D006327 ORTHO05D007952 6.4e-47 192.2 362 43.4
FAN08G2893 Fragaria x ananassa HOM05D006327 ORTHO05D007952 1.1e-46 191.4 375 42.7
FvH4_5g15910 Fragaria vesca HOM05D006327 ORTHO05D007952 1.9e-46 190.7 377 42.7
Actinidia34971 Actinidia chinensis HOM05D006327 ORTHO05D007952 4.1e-46 189.5 385 41.0
ClCG06G016530 Citrullus lanatus HOM05D006327 ORTHO05D007952 9.2e-46 188.3 378 42.9
Sed0003639 Sechium edule HOM05D006327 ORTHO05D007952 1.2e-45 188.0 357 44.3
Hund09383 Selenicereus undatus HOM05D006327 ORTHO05D007952 1.6e-45 187.6 367 43.3
FAN18G0307 Fragaria x ananassa HOM05D006327 ORTHO05D007952 3.5e-45 186.4 375 42.7
Prupe.5G183400 Prunus persica HOM05D006327 ORTHO05D007952 4.6e-45 186.0 376 41.5
Lj9A456G27 Lonicera japonica HOM05D006327 ORTHO05D007952 7.8e-45 185.3 377 42.4
vmacro16576 Vaccinium macrocarpon HOM05D006327 ORTHO05D007952 7.8e-45 185.3 374 40.6
MD14G1190500 Malus domestica HOM05D006327 ORTHO05D007952 8.6e-44 181.8 381 41.2
Lsat_1_v5_gn_5_17580 Lactuca sativa HOM05D006327 ORTHO05D007952 1.1e-43 181.4 378 40.5
Potri.012G072600 Populus trichocarpa HOM05D006327 ORTHO05D007952 1.2e-42 177.9 371 41.2
Hma1.2p1_0572F.1_g181140 Hydrangea macrophylla HOM05D006327 ORTHO05D007952 3.6e-42 176.4 364 40.4
arahy.Tifrunner.gnm1.ann1.RDR8CP Arachis hypogaea HOM05D006327 ORTHO05D007952 6.2e-42 175.6 386 39.4
Lalb_Chr11g0071521 Lupinus albus HOM05D006327 ORTHO05D007952 8.1e-42 175.3 367 40.9
Medtr0168s0110 Medicago truncatula HOM05D006327 ORTHO05D007952 8.1e-42 175.3 357 40.3
DCAR_021548 Daucus carota HOM05D006327 ORTHO05D007952 1.4e-41 174.5 363 43.3
Ah.02g112960 Amaranthus hybridus HOM05D006327 ORTHO05D007952 1.8e-41 174.1 367 40.1
TPR.G11929 Trifolium pratense HOM05D006327 ORTHO05D007952 1.8e-41 174.1 355 41.7
Lj1g0017631 Lotus japonicus HOM05D006327 ORTHO05D007952 6.8e-41 172.2 353 41.1
Glyma.06G188300 Glycine max HOM05D006327 ORTHO05D007952 1.5e-40 171.0 368 41.6
EL10Ac5g10880 Beta vulgaris HOM05D006327 ORTHO05D007952 2.0e-40 170.6 373 41.0
MELO3C017142.2 Cucumis melo HOM05D006327 ORTHO05D007952 2.0e-40 170.6 437 38.0
TWI81G1080 Tripterygium wilfordii HOM05D006327 ORTHO05D007952 2.6e-40 170.2 349 41.5
Phvul.009G183700 Phaseolus vulgaris HOM05D006327 ORTHO05D007952 3.4e-40 169.9 369 40.7
arahy.Tifrunner.gnm1.ann1.Y9A7HY Arachis hypogaea HOM05D006327 ORTHO05D007952 5.8e-40 169.1 378 38.9
Migut.I00102 Erythranthe guttata HOM05D006327 ORTHO05D007952 2.2e-39 167.2 367 39.2
VMungo1309G2881 Vigna mungo HOM05D006327 ORTHO05D007952 7.1e-38 162.2 360 39.7
COL.COLO4_21256 Corchorus olitorius HOM05D006327 ORTHO05D007952 1.6e-37 161.0 384 36.7
TAR629G2492 Trochodendron aralioides HOM05D006327 ORTHO05D007952 1.6e-37 161.0 391 36.1
Glyma.04G176800 Glycine max HOM05D006327 ORTHO05D007952 2.1e-37 160.6 361 40.2
Nitab4.5_0000003g0110 Nicotiana tabacum HOM05D006327 ORTHO05D007952 2.1e-37 160.6 366 39.6
Peaxi162Scf00689g00562 Petunia axillaris HOM05D006327 ORTHO05D007952 4.6e-37 159.5 373 38.3
Nitab4.5_0000758g0030 Nicotiana tabacum HOM05D006327 ORTHO05D007952 1.0e-36 158.3 370 38.1
AUR62021775 Chenopodium quinoa HOM05D006327 ORTHO05D007952 1.3e-36 157.9 356 41.3
CANSAT80G2449 Cannabis sativa HOM05D006327 ORTHO05D007952 1.7e-36 157.5 464 32.8
Nn4g22987 Nelumbo nucifera HOM05D006327 ORTHO05D007952 5.1e-36 156.0 415 37.3
DCAR_016525 Daucus carota HOM05D006327 ORTHO05D007952 1.1e-35 154.8 351 39.9
PGR083G2875 Punica granatum HOM05D006327 ORTHO05D007952 2.5e-35 153.7 305 41.6
Sabra12G0051800 Salix brachista HOM05D006327 ORTHO05D007952 1.6e-34 151.0 300 40.3
Cc04_g16010 Coffea canephora HOM05D006327 ORTHO05D007952 4.0e-33 146.4 400 35.0
PSO832G2780 Papaver somniferum HOM05D006327 ORTHO05D007952 1.2e-32 144.8 406 32.5
PSO591G0157 Papaver somniferum HOM05D006327 ORTHO05D007952 3.4e-32 143.3 410 33.2
PGSC0003DMG400033064 Solanum tuberosum HOM05D006327 ORTHO05D007952 4.4e-32 142.9 359 33.4
HanXRQChr02g0045371 Helianthus annuus HOM05D006327 ORTHO05D007952 5.8e-32 142.5 354 37.6
Solyc06g071170.4 Solanum lycopersicum HOM05D006327 ORTHO05D007952 9.9e-32 141.7 354 36.7
Sopen06g027480 Solanum pennellii HOM05D006327 ORTHO05D007952 1.3e-31 141.4 354 36.4
Rhsim12G0160300 Rhododendron simsii HOM05D006327 ORTHO05D007952 1.4e-30 137.9 310 37.7
SGA_v2.0_scaffold56G20076 Striga asiatica HOM05D006327 ORTHO05D007952 3.5e-29 133.3 378 33.1
CiPaw.12G020800 Carya illinoinensis HOM05D006327 ORTHO05D007952 5.1e-28 129.4 305 38.7
Aqoxy3G03193 Aquilegia oxysepala HOM05D006327 ORTHO05D007952 4.3e-27 126.3 426 33.3
unitig_61.g26481 Utricularia gibba HOM05D006327 ORTHO05D007952 2.8e-26 123.6 349 33.2
CDE06G0071 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 3.6e-26 123.2 363 35.8
Sed0027580 Sechium edule HOM05D006327 ORTHO05D007952 6.2e-26 122.5 296 39.5
Psat5g181760 Pisum sativum HOM05D006327 ORTHO05D007952 2.4e-25 120.6 294 39.5
Hund02693 Selenicereus undatus HOM05D006327 ORTHO05D007952 1.9e-22 110.9 349 33.8
Sc12g0005950 Simmondsia chinensis HOM05D006327 ORTHO05D007952 4.6e-21 106.3 389 31.4
ECA247G1897 Erigeron canadensis HOM05D006327 ORTHO05D007881 1.7e-20 104.4 351 32.5
Zm00001eb053670 Zea mays HOM05D006327 ORTHO05D007952 6.2e-18 95.9 346 32.7
HPP92_015937 Vanilla planifolia HOM05D006327 ORTHO05D007952 8.1e-18 95.5 351 33.3
BcaNung06177 Brassica carinata HOM05D006327 ORTHO05D007952 1.4e-17 94.7 63 77.8
SGA_v2.0_scaffold25G10883 Striga asiatica HOM05D006327 ORTHO05D007952 4.0e-17 93.2 363 31.1
HPP92_015918 Vanilla planifolia HOM05D006327 ORTHO05D007952 4.0e-17 93.2 349 33.0
Actinidia19065 Actinidia chinensis HOM05D006327 ORTHO05D007952 9.9e-16 88.6 313 30.0
SEGI_36963 Sequoiadendron giganteum HOM05D006327 ORTHO05D007952 3.8e-15 86.7 256 33.2
Dinv19897 Davidia involucrata HOM05D006327 ORTHO05D007952 5.4e-14 82.8 340 28.8
Atru.chr9.2360 Acer truncatum HOM05D006327 ORTHO05D007952 1.6e-13 81.3 147 46.9
Nn4g25043 Nelumbo nucifera HOM05D006327 ORTHO05D007952 7.9e-13 79.0 67 58.2
Nn5g29485 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.8e-12 77.8 67 56.7
Nn5g29700 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.3e-12 77.4 61 60.7
Cpa.g.c28309.3 Carica papaya HOM05D006327 ORTHO05D007952 5.1e-12 76.3 212 36.8
Nn5g29803 Nelumbo nucifera HOM05D006327 ORTHO05D007952 5.1e-12 76.3 124 41.1
Nn6g34101 Nelumbo nucifera HOM05D006327 ORTHO05D007952 8.7e-12 75.5 67 55.2
Nn2g11504 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.5e-11 74.7 67 55.2
Nn2g11507 Nelumbo nucifera HOM05D006327 ORTHO05D007952 1.5e-11 74.7 67 55.2
Nn1g09464 Nelumbo nucifera HOM05D006327 ORTHO05D007952 2.5e-11 73.9 53 62.3
Os05g0220900 Oryza sativa ssp. japonica HOM05D006327 ORTHO05D007952 3.3e-11 73.6 371 27.8
Nn1g07420 Nelumbo nucifera HOM05D006327 ORTHO05D007952 7.4e-11 72.4 67 55.2
Sc12g0005960 Simmondsia chinensis HOM05D006327 ORTHO05D007952 7.4e-11 72.4 53 62.3
CDE08G0244 Ceratophyllum demersum HOM05D006327 ORTHO05D007952 6.2e-10 69.3 279 31.9
ATR0665G641 Amborella trichopoda HOM05D006327 ORTHO05D007952 8.1e-10 68.9 163 31.9
Oeu035426.1 Olea europaea HOM05D006327 ORTHO05D007952 1.4e-09 68.2 143 32.9
Migut.B01064 Erythranthe guttata HOM05D006327 ORTHO05D007952 7.6e-08 62.4 57 57.9
SMO361G0693 Selaginella moellendorffii HOM05D006327 ORTHO05D007952 4.2e-06 56.6 208 27.4
Cpa.g.sc939.1 Carica papaya HOM05D006327 ORTHO05D007952 5.5e-06 56.2 66 57.6


User provided reference genes

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