Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00866 Brassica carinata HOM05D001961 ORTHO05D002286 7.4e-53 210.3 109 100.0
BcaC01g01766 Brassica carinata HOM05D001961 ORTHO05D002286 1.6e-34 149.4 103 75.7
C03p72140 Brassica napus HOM05D001961 ORTHO05D002286 1.6e-34 149.4 103 75.7
C03p72190 Brassica napus HOM05D001961 ORTHO05D002286 1.6e-34 149.4 103 75.7
BolC3t19515H Brassica oleracea HOM05D001961 ORTHO05D002286 1.6e-34 149.4 103 75.7
A06p19720 Brassica napus HOM05D001961 ORTHO05D002286 3.5e-34 148.3 103 74.8
A06p19750 Brassica napus HOM05D001961 ORTHO05D002286 3.5e-34 148.3 103 74.8
BraA06t25050Z Brassica rapa HOM05D001961 ORTHO05D002286 3.5e-34 148.3 103 74.8
BraA06t25054Z Brassica rapa HOM05D001961 ORTHO05D002286 3.5e-34 148.3 103 74.8
AT3G47890 Arabidopsis thaliana HOM05D001961 ORTHO05D002286 4.5e-34 147.9 143 60.1
Thhalv10010059m.g Eutrema salsugineum HOM05D001961 ORTHO05D002286 3.8e-33 144.8 103 72.8
Carub.0005s1404 Capsella rubella HOM05D001961 ORTHO05D002286 5.0e-33 144.4 103 72.8
CARHR156620 Cardamine hirsuta HOM05D001961 ORTHO05D002286 5.0e-33 144.4 103 71.8
BcaB02g10685 Brassica carinata HOM05D001961 ORTHO05D002286 1.1e-32 143.3 100 75.0
CARHR156630 Cardamine hirsuta HOM05D001961 ORTHO05D002286 1.5e-32 142.9 103 71.8
Carub.0005s1403 Capsella rubella HOM05D001961 ORTHO05D002286 2.5e-32 142.1 143 58.0
THA.LOC104821450 Tarenaya hassleriana HOM05D001961 ORTHO05D002286 2.5e-32 142.1 103 70.9
AT3G47910 Arabidopsis thaliana HOM05D001961 ORTHO05D002286 4.2e-32 141.4 104 72.1
AL5G27220 Arabidopsis lyrata HOM05D001961 ORTHO05D002286 2.1e-31 139.0 143 57.3
AL5G27230 Arabidopsis lyrata HOM05D001961 ORTHO05D002286 2.1e-31 139.0 104 71.2
Aa31LG4G16560 Aethionema arabicum HOM05D001961 ORTHO05D002286 3.0e-30 135.2 103 67.0
Ciclev10018472m.g Citrus clementina HOM05D001961 ORTHO05D002286 6.8e-30 134.0 87 72.4
Sed0025522 Sechium edule HOM05D001961 ORTHO05D002286 1.2e-29 133.3 87 72.4
Rhsim08G0161300 Rhododendron simsii HOM05D001961 ORTHO05D002286 2.0e-29 132.5 87 71.3
vmacro19421 Vaccinium macrocarpon HOM05D001961 ORTHO05D002286 2.0e-29 132.5 87 71.3
PGSC0003DMG400033067 Solanum tuberosum HOM05D001961 ORTHO05D002286 2.6e-29 132.1 87 73.6
Solyc06g071120.3 Solanum lycopersicum HOM05D001961 ORTHO05D002286 3.4e-29 131.7 99 67.7
Sopen06g027420 Solanum pennellii HOM05D001961 ORTHO05D002286 3.4e-29 131.7 99 67.7
CAN.G628.49 Capsicum annuum HOM05D001961 ORTHO05D002286 4.4e-29 131.3 99 67.7
Hma1.2p1_0002F.1_g003390 Hydrangea macrophylla HOM05D001961 ORTHO05D002286 5.7e-29 131.0 86 70.9
ClCG06G016460 Citrullus lanatus HOM05D001961 ORTHO05D002286 7.5e-29 130.6 87 72.4
CsaV3_1G002070 Cucumis sativus L. HOM05D001961 ORTHO05D002286 9.8e-29 130.2 87 73.6
Dinv19903 Davidia involucrata HOM05D001961 ORTHO05D002286 9.8e-29 130.2 87 70.1
Nitab4.5_0000909g0070 Nicotiana tabacum HOM05D001961 ORTHO05D002286 1.3e-28 129.8 99 67.7
Peaxi162Scf00689g00564 Petunia axillaris HOM05D001961 ORTHO05D002286 1.3e-28 129.8 87 72.4
TWI15G0443 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 1.7e-28 129.4 103 62.1
TWI60G1556 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 1.7e-28 129.4 103 63.1
Dinv38651 Davidia involucrata HOM05D001961 ORTHO05D002286 2.2e-28 129.0 87 69.0
Thhalv10010060m.g Eutrema salsugineum HOM05D001961 ORTHO05D002286 2.2e-28 129.0 106 66.0
COL.COLO4_35465 Corchorus olitorius HOM05D001961 ORTHO05D002286 2.8e-28 128.6 87 69.0
MELO3C017148.2 Cucumis melo HOM05D001961 ORTHO05D002286 2.8e-28 128.6 87 72.4
DCAR_021541 Daucus carota HOM05D001961 ORTHO05D002286 2.8e-28 128.6 87 70.1
Duzib068G1318 Durio zibethinus HOM05D001961 ORTHO05D002286 2.8e-28 128.6 87 69.0
Nitab4.5_0000003g0050 Nicotiana tabacum HOM05D001961 ORTHO05D002286 2.8e-28 128.6 99 65.7
Actinidia34975 Actinidia chinensis HOM05D001961 ORTHO05D002286 3.7e-28 128.3 87 69.0
Duzib205G1945 Durio zibethinus HOM05D001961 ORTHO05D002286 3.7e-28 128.3 87 69.0
MSTRG.11404 Avicennia marina HOM05D001961 ORTHO05D002286 4.8e-28 127.9 87 67.8
CSS0014551 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 4.8e-28 127.9 87 70.1
CSS0045618 Camellia sinensis var. sinensis HOM05D001961 ORTHO05D002286 4.8e-28 127.9 87 70.1
Cc04_g15870 Coffea canephora HOM05D001961 ORTHO05D002286 4.8e-28 127.9 99 63.6
Sabra12G0051100 Salix brachista HOM05D001961 ORTHO05D002286 4.8e-28 127.9 86 69.8
GSVIVG01008079001 Vitis vinifera HOM05D001961 ORTHO05D002286 4.8e-28 127.9 87 69.0
Lj5C117T8 Lonicera japonica HOM05D001961 ORTHO05D002286 6.3e-28 127.5 87 70.1
Sp5g14040 Schrenkiella parvula HOM05D001961 ORTHO05D002286 6.3e-28 127.5 104 66.3
SGA_v2.0_scaffold114G31883 Striga asiatica HOM05D001961 ORTHO05D002286 6.3e-28 127.5 87 67.8
Thecc.03G077100 Theobroma cacao HOM05D001961 ORTHO05D002286 8.3e-28 127.1 87 67.8
Oeu039544.2 Olea europaea HOM05D001961 ORTHO05D002286 1.1e-27 126.7 99 62.6
QL10p014874 Quercus lobata HOM05D001961 ORTHO05D002286 1.1e-27 126.7 87 70.1
Sabra15G0091600 Salix brachista HOM05D001961 ORTHO05D002286 1.1e-27 126.7 86 69.8
Lj9C457G12 Lonicera japonica HOM05D001961 ORTHO05D002286 1.4e-27 126.3 87 71.3
TWI81G0197 Tripterygium wilfordii HOM05D001961 ORTHO05D002286 1.4e-27 126.3 87 66.7
Migut.I00114 Erythranthe guttata HOM05D001961 ORTHO05D002286 1.8e-27 125.9 100 62.0
MD06G1185800 Malus domestica HOM05D001961 ORTHO05D002286 1.8e-27 125.9 87 67.8
Potri.012G071900 Populus trichocarpa HOM05D001961 ORTHO05D002286 1.8e-27 125.9 85 69.4
FvH4_5g15740 Fragaria vesca HOM05D001961 ORTHO05D002286 3.1e-27 125.2 87 67.8
Potri.015G066500 Populus trichocarpa HOM05D001961 ORTHO05D002286 3.1e-27 125.2 86 67.4
Cfa019014 Carpinus fangiana HOM05D001961 ORTHO05D002286 4.1e-27 124.8 87 66.7
Gohir.A11G028810 Gossypium hirsutum HOM05D001961 ORTHO05D002286 4.1e-27 124.8 87 66.7
Gohir.D11G032100 Gossypium hirsutum HOM05D001961 ORTHO05D002286 4.1e-27 124.8 87 66.7
Oeu020375.1 Olea europaea HOM05D001961 ORTHO05D002286 4.1e-27 124.8 99 62.6
Atru.chr9.2337 Acer truncatum HOM05D001961 ORTHO05D002286 5.4e-27 124.4 87 69.0
FAN08G2604 Fragaria x ananassa HOM05D001961 ORTHO05D002286 7.0e-27 124.0 87 66.7
FAN13G0464 Fragaria x ananassa HOM05D001961 ORTHO05D002286 7.0e-27 124.0 87 66.7
FAN18G4418 Fragaria x ananassa HOM05D001961 ORTHO05D002286 7.0e-27 124.0 87 66.7
RcHm_v2.0_Chr7g0180371 Rosa chinensis HOM05D001961 ORTHO05D002286 7.0e-27 124.0 87 66.7
Gohir.D03G090700 Gossypium hirsutum HOM05D001961 ORTHO05D002286 9.1e-27 123.6 87 65.5
Gorai.003G070500 Gossypium raimondii HOM05D001961 ORTHO05D002286 9.1e-27 123.6 87 65.5
Gorai.007G034900 Gossypium raimondii HOM05D001961 ORTHO05D002286 9.1e-27 123.6 87 65.5
SalBow7G0691 Salvia bowleyana HOM05D001961 ORTHO05D002286 9.1e-27 123.6 85 67.1
SGA_v2.0_scaffold7G04090 Striga asiatica HOM05D001961 ORTHO05D002286 9.1e-27 123.6 87 66.7
TAR374G1240 Trochodendron aralioides HOM05D001961 ORTHO05D002286 9.1e-27 123.6 103 61.2
Eucgr.B00398 Eucalyptus grandis HOM05D001961 ORTHO05D002286 1.2e-26 123.2 99 60.6
Manes.14G073702 Manihot esculenta HOM05D001961 ORTHO05D002286 1.2e-26 123.2 87 66.7
Sc04g0002330 Simmondsia chinensis HOM05D001961 ORTHO05D002286 1.2e-26 123.2 103 59.2
Aa31LG11G1000 Aethionema arabicum HOM05D001961 ORTHO05D002286 1.6e-26 122.9 103 62.1
Haze_07394 Corylus avellana HOM05D001961 ORTHO05D002286 1.6e-26 122.9 87 65.5
FAN04G1134 Fragaria x ananassa HOM05D001961 ORTHO05D002286 1.6e-26 122.9 87 65.5
Lsat_1_v5_gn_1_11560 Lactuca sativa HOM05D001961 ORTHO05D002286 1.6e-26 122.9 87 63.2
MD14G1192000 Malus domestica HOM05D001961 ORTHO05D002286 1.6e-26 122.9 87 66.7
SalBow5G1786 Salvia bowleyana HOM05D001961 ORTHO05D002286 1.6e-26 122.9 99 59.6
Sp5g14050 Schrenkiella parvula HOM05D001961 ORTHO05D002286 2.7e-26 122.1 106 63.2
Gohir.A03G064400 Gossypium hirsutum HOM05D001961 ORTHO05D002286 4.5e-26 121.3 87 64.4
Prupe.5G184600 Prunus persica HOM05D001961 ORTHO05D002286 4.5e-26 121.3 87 66.7
Nn4g23006 Nelumbo nucifera HOM05D001961 ORTHO05D002286 1.3e-25 119.8 103 61.2
SEGI_13866 Sequoiadendron giganteum HOM05D001961 ORTHO05D002286 1.3e-25 119.8 103 56.3
Nn3g17102 Nelumbo nucifera HOM05D001961 ORTHO05D002286 1.7e-25 119.4 87 66.7
Peaxi162Scf00009g00524 Petunia axillaris HOM05D001961 ORTHO05D002286 2.3e-25 119.0 87 64.4
BcaC01g01759 Brassica carinata HOM05D001961 ORTHO05D002286 2.9e-25 118.6 172 47.1
PGR083G2262 Punica granatum HOM05D001961 ORTHO05D002286 2.9e-25 118.6 106 52.8
Aqoxy3G03236 Aquilegia oxysepala HOM05D001961 ORTHO05D002286 3.8e-25 118.2 87 64.4
Lsat_1_v5_gn_5_18460 Lactuca sativa HOM05D001961 ORTHO05D002286 8.6e-25 117.1 87 63.2
PGSC0003DMG400013181 Solanum tuberosum HOM05D001961 ORTHO05D002286 8.6e-25 117.1 94 59.6
Manes.06G097300 Manihot esculenta HOM05D001961 ORTHO05D002286 1.1e-24 116.7 87 63.2
CDE06G2189 Ceratophyllum demersum HOM05D001961 ORTHO05D002286 1.5e-24 116.3 102 58.8
Actinidia37665 Actinidia chinensis HOM05D001961 ORTHO05D002286 1.9e-24 115.9 87 65.5
HanXRQChr08g0236941 Helianthus annuus HOM05D001961 ORTHO05D002286 1.9e-24 115.9 87 62.1
ATR1153G111 Amborella trichopoda HOM05D001961 ORTHO05D002286 2.5e-24 115.5 87 64.4
CANSAT80G1878 Cannabis sativa HOM05D001961 ORTHO05D002286 4.2e-24 114.8 86 62.8
unitig_744.g24389 Utricularia gibba HOM05D001961 ORTHO05D002286 7.2e-24 114.0 87 63.2
CDE07G1845 Ceratophyllum demersum HOM05D001961 ORTHO05D002286 9.5e-24 113.6 102 57.8
MBI01_g01232_MAGBIO Magnolia biondii HOM05D001961 ORTHO05D002286 1.2e-23 113.2 88 63.6
HanXRQChr05g0155261 Helianthus annuus HOM05D001961 ORTHO05D002286 1.6e-23 112.8 87 59.8
Solyc03g113370.3 Solanum lycopersicum HOM05D001961 ORTHO05D002286 1.6e-23 112.8 94 59.6
Sopen03g032420 Solanum pennellii HOM05D001961 ORTHO05D002286 1.6e-23 112.8 94 59.6
Ah.02g113120 Amaranthus hybridus HOM05D001961 ORTHO05D002286 2.1e-23 112.5 86 58.1
HPP92_023511 Vanilla planifolia HOM05D001961 ORTHO05D002286 4.7e-23 111.3 103 57.3
HPP92_023556 Vanilla planifolia HOM05D001961 ORTHO05D002286 4.7e-23 111.3 103 57.3
Ca_21858_v3 Cicer arietinum L. HOM05D001961 ORTHO05D002286 6.1e-23 110.9 86 58.1
Migut.I00115 Erythranthe guttata HOM05D001961 ORTHO05D002286 1.4e-22 109.8 86 60.5
TPR.G38388 Trifolium pratense HOM05D001961 ORTHO05D002286 2.3e-22 109.0 86 57.0
PSO161G0075 Papaver somniferum HOM05D001961 ORTHO05D002286 3.0e-22 108.6 88 58.0
PSO478G4671 Papaver somniferum HOM05D001961 ORTHO05D002286 3.0e-22 108.6 88 58.0
AUR62021754 Chenopodium quinoa HOM05D001961 ORTHO05D002286 4.0e-22 108.2 103 51.5
CAN.G999.31 Capsicum annuum HOM05D001961 ORTHO05D002286 6.8e-22 107.5 120 51.7
Lj1g0021908 Lotus japonicus HOM05D001961 ORTHO05D002286 6.8e-22 107.5 101 54.5
EL10Ac5g10921 Beta vulgaris HOM05D001961 ORTHO05D002286 8.9e-22 107.1 86 55.8
BcaB05g23091 Brassica carinata HOM05D001961 ORTHO05D002286 8.9e-22 107.1 145 50.3
Psat4g054160 Pisum sativum HOM05D001961 ORTHO05D002286 8.9e-22 107.1 86 55.8
Oeu022639.1 Olea europaea HOM05D001961 ORTHO05D002286 1.5e-21 106.3 86 57.0
Hund02679 Selenicereus undatus HOM05D001961 ORTHO05D002286 2.6e-21 105.5 100 53.0
arahy.Tifrunner.gnm1.ann1.DV6TYS Arachis hypogaea HOM05D001961 ORTHO05D002286 3.4e-21 105.1 97 51.5
arahy.Tifrunner.gnm1.ann1.LMB17M Arachis hypogaea HOM05D001961 ORTHO05D002286 3.4e-21 105.1 97 51.5
Glyma.05G031000 Glycine max HOM05D001961 ORTHO05D002286 3.4e-21 105.1 84 57.1
Glyma.17G095800 Glycine max HOM05D001961 ORTHO05D002286 3.4e-21 105.1 84 57.1
Ah.11g048820 Amaranthus hybridus HOM05D001961 ORTHO05D002286 4.4e-21 104.8 82 61.0
AUR62008343 Chenopodium quinoa HOM05D001961 ORTHO05D002286 5.7e-21 104.4 103 50.5
PSO591G0439 Papaver somniferum HOM05D001961 ORTHO05D002286 5.7e-21 104.4 87 58.6
PSO832G1192 Papaver somniferum HOM05D001961 ORTHO05D002286 7.5e-21 104.0 87 58.6
Lj4g0028007 Lotus japonicus HOM05D001961 ORTHO05D002286 2.8e-20 102.1 86 53.5
Pp3c16_3030 Physcomitrium patens HOM05D001961 ORTHO05D002286 2.8e-20 102.1 84 58.3
Lalb_Chr12g0201211 Lupinus albus HOM05D001961 ORTHO05D002286 4.9e-20 101.3 87 55.2
Lalb_Chr13g0298141 Lupinus albus HOM05D001961 ORTHO05D002286 4.9e-20 101.3 87 56.3
Medtr4g107470 Medicago truncatula HOM05D001961 ORTHO05D002286 1.1e-19 100.1 86 51.2
Phvul.003G194200 Phaseolus vulgaris HOM05D001961 ORTHO05D002286 1.1e-19 100.1 101 49.5
VMungo1215G0372 Vigna mungo HOM05D001961 ORTHO05D002286 1.4e-19 99.8 101 47.5
MBI04_g20669_MAGBIO Magnolia biondii HOM05D001961 ORTHO05D002286 3.1e-19 98.6 88 55.7
Oeu006173.1 Olea europaea HOM05D001961 ORTHO05D002286 4.1e-19 98.2 86 58.1
Hund09373 Selenicereus undatus HOM05D001961 ORTHO05D002286 2.0e-18 95.9 98 51.0
TAR622G0827 Trochodendron aralioides HOM05D001961 ORTHO05D002286 1.0e-17 93.6 87 56.3
Dinv33700 Davidia involucrata HOM05D001961 ORTHO05D002286 1.7e-17 92.8 85 54.1
DCAR_026083 Daucus carota HOM05D001961 ORTHO05D002286 1.5e-16 89.7 87 47.1
Oeu006172.1 Olea europaea HOM05D001961 ORTHO05D002286 3.6e-15 85.1 74 58.1
PSO161G0094 Papaver somniferum HOM05D001961 ORTHO05D002286 1.8e-14 82.8 78 52.6
Dinv33705 Davidia involucrata HOM05D001961 ORTHO05D002286 5.2e-14 81.3 86 46.5
Dinv33701 Davidia involucrata HOM05D001961 ORTHO05D002286 1.2e-13 80.1 98 45.9
Nn1g04369 Nelumbo nucifera HOM05D001961 ORTHO05D002286 1.2e-13 80.1 64 60.9
ECA246G4653 Erigeron canadensis HOM05D001961 ORTHO05D002286 2.0e-13 79.3 84 47.6
Dinv33730 Davidia involucrata HOM05D001961 ORTHO05D002286 5.8e-13 77.8 104 45.2
BolC3t19510H Brassica oleracea HOM05D001961 ORTHO05D002286 3.7e-12 75.1 61 65.6
Actinidia06060 Actinidia chinensis HOM05D001961 ORTHO05D002286 6.4e-12 74.3 75 50.7
Rhsim10G0031400 Rhododendron simsii HOM05D001961 ORTHO05D002286 3.2e-11 72.0 69 52.2
Aqoxy4G02900 Aquilegia oxysepala HOM05D001961 ORTHO05D002286 1.2e-10 70.1 95 41.1
Dinv33704 Davidia involucrata HOM05D001961 ORTHO05D002286 2.0e-10 69.3 97 42.3
Oeu022619.1 Olea europaea HOM05D001961 ORTHO05D002286 2.0e-10 69.3 72 51.4
Rhsim10G0032100 Rhododendron simsii HOM05D001961 ORTHO05D002286 3.5e-10 68.6 69 50.7
Haze_05897 Corylus avellana HOM05D001961 ORTHO05D002286 1.0e-09 67.0 79 48.1
Cfa000802 Carpinus fangiana HOM05D001961 ORTHO05D002286 6.6e-09 64.3 79 46.8
Haze_05891 Corylus avellana HOM05D001961 ORTHO05D002286 8.6e-09 63.9 79 45.6
GSVIVG01032595001 Vitis vinifera HOM05D001961 ORTHO05D002286 8.6e-09 63.9 73 43.8
Haze_05896 Corylus avellana HOM05D001961 ORTHO05D002286 1.1e-08 63.5 79 44.3
Aqoxy4G02898 Aquilegia oxysepala HOM05D001961 ORTHO05D002286 1.2e-07 60.1 74 45.9
Actinidia36031 Actinidia chinensis HOM05D001961 ORTHO05D002286 1.6e-07 59.7 65 46.2
Cfa011655 Carpinus fangiana HOM05D000005 ORTHO05D010574 6.2e-07 57.8 77 35.1
Cfa009758 Carpinus fangiana HOM05D001961 ORTHO05D002286 2.3e-06 55.8 73 41.1
Cfa021166 Carpinus fangiana HOM05D001961 ORTHO05D002286 4.0e-06 55.1 73 41.1
Cfa009801 Carpinus fangiana HOM05D001961 ORTHO05D002286 5.2e-06 54.7 74 39.2
Cfa009800 Carpinus fangiana HOM05D001961 ORTHO05D002286 6.8e-06 54.3 76 38.2
CDE06G0073 Ceratophyllum demersum HOM05D001961 ORTHO05D002286 6.8e-06 54.3 85 36.5
Dinv33709 Davidia involucrata HOM05D001961 ORTHO05D002286 6.8e-06 54.3 65 38.5


User provided reference genes

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