Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00849 Brassica carinata HOM05D001431 ORTHO05D001268 1.8e-87 325.9 159 100.0
BcaB01g00851 Brassica carinata HOM05D001431 ORTHO05D001268 3.5e-51 205.3 170 66.5
BcaC07g39288 Brassica carinata HOM05D001431 ORTHO05D001268 2.8e-40 169.1 86 96.5
BcaB01g00850 Brassica carinata HOM05D001431 ORTHO05D001268 3.6e-40 168.7 86 95.3
A06p19620 Brassica napus HOM05D001431 ORTHO05D001268 3.6e-40 168.7 86 95.3
C08p22950 Brassica napus HOM05D001431 ORTHO05D001268 3.6e-40 168.7 86 95.3
BolC8t49932H Brassica oleracea HOM05D001431 ORTHO05D001268 3.6e-40 168.7 86 95.3
BraA06t25042Z Brassica rapa HOM05D001431 ORTHO05D001268 4.1e-36 155.2 86 90.7
Carub.0005s1413 Capsella rubella HOM05D001431 ORTHO05D001268 1.3e-26 123.6 85 72.9
CARHR156750 Cardamine hirsuta HOM05D001431 ORTHO05D001268 1.2e-24 117.1 87 70.1
AT3G48020 Arabidopsis thaliana HOM05D001431 ORTHO05D001268 2.1e-24 116.3 86 68.6
AL5G27340 Arabidopsis lyrata HOM05D001431 ORTHO05D001268 2.8e-24 115.9 86 68.6
BraA06t25907Z Brassica rapa HOM05D001431 ORTHO05D001268 2.6e-22 109.4 78 69.2
A06p29610 Brassica napus HOM05D001431 ORTHO05D001268 5.8e-22 108.2 78 69.2
AT5G62865 Arabidopsis thaliana HOM05D001431 ORTHO05D001268 1.7e-21 106.7 78 66.7
Sp5g13960 Schrenkiella parvula HOM05D001431 ORTHO05D001268 3.8e-21 105.5 71 69.0
C02p62450 Brassica napus HOM05D001431 ORTHO05D001268 6.4e-21 104.8 78 66.7
AL8G39870 Arabidopsis lyrata HOM05D001431 ORTHO05D001268 8.4e-21 104.4 78 65.4
Sp2g26010 Schrenkiella parvula HOM05D001431 ORTHO05D001268 1.1e-20 104.0 78 65.4
A02p42530 Brassica napus HOM05D001431 ORTHO05D001268 1.4e-20 103.6 78 65.4
BolC2t12300H Brassica oleracea HOM05D001431 ORTHO05D001268 1.4e-20 103.6 78 65.4
BraA02t09182Z Brassica rapa HOM05D001431 ORTHO05D001268 1.4e-20 103.6 78 65.4
Thhalv10005490m.g Eutrema salsugineum HOM05D001431 ORTHO05D001268 1.4e-20 103.6 78 65.4
Aa31LG11G840 Aethionema arabicum HOM05D001431 ORTHO05D001268 2.4e-20 102.8 78 64.1
BcaB07g29856 Brassica carinata HOM05D001431 ORTHO05D001268 3.2e-20 102.4 79 64.6
BcaC03g18175 Brassica carinata HOM05D001431 ORTHO05D001268 3.2e-20 102.4 78 64.1
CARHR276660 Cardamine hirsuta HOM05D001431 ORTHO05D001268 3.2e-20 102.4 78 62.8
Carub.0008s2358 Capsella rubella HOM05D001431 ORTHO05D001268 4.2e-20 102.1 77 64.9
BcaB04g17787 Brassica carinata HOM05D001431 ORTHO05D001268 1.2e-19 100.5 63 76.2
Aa31LG4G16660 Aethionema arabicum HOM05D001431 ORTHO05D001268 2.7e-19 99.4 91 56.0
BcaC01g02530 Brassica carinata HOM05D001431 ORTHO05D001268 3.5e-19 99.0 77 63.6
BolC3t18641H Brassica oleracea HOM05D001431 ORTHO05D001268 3.5e-19 99.0 77 63.6
Thhalv10010820m.g Eutrema salsugineum HOM05D001431 ORTHO05D001268 4.6e-19 98.6 78 69.2
Prupe.5G176600 Prunus persica HOM05D001431 ORTHO05D001268 1.1e-12 77.4 80 53.8
MD14G1183900 Malus domestica HOM05D001431 ORTHO05D001268 9.3e-12 74.3 72 56.9
Atru.chr9.2435 Acer truncatum HOM05D001431 ORTHO05D001268 2.1e-11 73.2 78 50.0
MD00G1171700 Malus domestica HOM05D001431 ORTHO05D001268 3.5e-11 72.4 71 57.7
Manes.14G067900 Manihot esculenta HOM05D001431 ORTHO05D001268 5.1e-10 68.6 98 45.9
Ciclev10022556m.g Citrus clementina HOM05D001431 ORTHO05D001268 6.6e-10 68.2 84 48.8
Sed0019889 Sechium edule HOM05D001431 ORTHO05D001268 6.6e-10 68.2 73 52.1
Gohir.A09G027600 Gossypium hirsutum HOM05D001431 ORTHO05D001268 1.1e-09 67.4 75 54.7
VMungo1309G2303 Vigna mungo HOM05D001431 ORTHO05D001268 1.1e-09 67.4 69 50.7
THA.LOC104808387 Tarenaya hassleriana HOM05D001431 ORTHO05D001268 1.9e-09 66.6 78 50.0
Cpa.g.sc124.31 Carica papaya HOM05D001431 ORTHO05D001268 2.5e-09 66.2 72 51.4
Gohir.D09G027000 Gossypium hirsutum HOM05D001431 ORTHO05D001268 3.3e-09 65.9 75 53.3
RcHm_v2.0_Chr7g0193921 Rosa chinensis HOM05D001431 ORTHO05D001268 3.3e-09 65.9 85 49.4
Sed0019868 Sechium edule HOM05D001431 ORTHO05D001268 3.3e-09 65.9 73 47.9
unitig_52.g17583 Utricularia gibba HOM05D001431 ORTHO05D001268 4.3e-09 65.5 76 48.7
Lalb_Chr08g0236341 Lupinus albus HOM05D001431 ORTHO05D001268 5.6e-09 65.1 69 50.7
ClCG01G012990 Citrullus lanatus HOM05D001431 ORTHO05D001268 7.3e-09 64.7 76 51.3
Lj9P451T20 Lonicera japonica HOM05D001431 ORTHO05D001268 7.3e-09 64.7 75 49.3
Medtr3g078240 Medicago truncatula HOM05D001431 ORTHO05D001268 7.3e-09 64.7 72 50.0
SHI07895 Sapria himalayana HOM05D001431 ORTHO05D001268 7.3e-09 64.7 80 51.2
SGA_v2.0_scaffold90G27977 Striga asiatica HOM05D001431 ORTHO05D001268 7.3e-09 64.7 77 50.6
FAN04G2146 Fragaria x ananassa HOM05D001431 ORTHO05D001268 9.6e-09 64.3 71 50.7
CAN.G781.33 Capsicum annuum HOM05D001431 ORTHO05D001268 1.3e-08 63.9 69 49.3
ClCG06G016870 Citrullus lanatus HOM05D001431 ORTHO05D001268 1.3e-08 63.9 75 48.0
FvH4_5g05080 Fragaria vesca HOM05D001431 ORTHO05D001268 1.3e-08 63.9 71 50.7
FAN18G4037 Fragaria x ananassa HOM05D001431 ORTHO05D001268 1.3e-08 63.9 71 50.7
MBI15_g37783_MAGBIO Magnolia biondii HOM05D001431 ORTHO05D001268 1.3e-08 63.9 70 54.3
Phvul.009G180401 Phaseolus vulgaris HOM05D001431 ORTHO05D001268 1.3e-08 63.9 69 47.8
Sabra12G0056100 Salix brachista HOM05D001431 ORTHO05D001268 1.3e-08 63.9 76 50.0
MELO3C017105.2 Cucumis melo HOM05D001431 ORTHO05D001268 1.6e-08 63.5 80 45.0
Duzib205G1718 Durio zibethinus HOM05D001431 ORTHO05D001268 1.6e-08 63.5 74 52.7
Gorai.006G031400 Gossypium raimondii HOM05D001431 ORTHO05D001268 1.6e-08 63.5 75 52.0
Thecc.03G008300 Theobroma cacao HOM05D001431 ORTHO05D001268 1.6e-08 63.5 74 52.7
Duzib068G1384 Durio zibethinus HOM05D001431 ORTHO05D001268 2.1e-08 63.2 75 53.3
Glyma.06G184300 Glycine max HOM05D001431 ORTHO05D001268 2.1e-08 63.2 69 50.7
Nitab4.5_0000003g0460 Nicotiana tabacum HOM05D001431 ORTHO05D001268 2.1e-08 63.2 85 48.2
Glyma.04G180800 Glycine max HOM05D001431 ORTHO05D001268 2.8e-08 62.8 71 46.5
Lj1g0025958 Lotus japonicus HOM05D001431 ORTHO05D001268 2.8e-08 62.8 72 48.6
Manes.06G102700 Manihot esculenta HOM05D001431 ORTHO05D001268 2.8e-08 62.8 100 42.0
Psat5g113360 Pisum sativum HOM05D001431 ORTHO05D001268 2.8e-08 62.8 75 48.0
Potri.015G073800 Populus trichocarpa HOM05D001431 ORTHO05D001268 2.8e-08 62.8 78 52.6
TPR.G24028 Trifolium pratense HOM05D001431 ORTHO05D001268 2.8e-08 62.8 68 48.5
CiPaw.11G029500 Carya illinoinensis HOM05D001431 ORTHO05D001268 3.6e-08 62.4 76 50.0
FAN18G1899 Fragaria x ananassa HOM05D001431 ORTHO05D001268 3.6e-08 62.4 89 46.1
Lj5P122T91 Lonicera japonica HOM05D001431 ORTHO05D001268 3.6e-08 62.4 74 48.6
Potri.012G078300 Populus trichocarpa HOM05D001431 ORTHO05D001268 3.6e-08 62.4 75 52.0
QL10p013648 Quercus lobata HOM05D001431 ORTHO05D001268 3.6e-08 62.4 88 44.3
Rhsim12G0163100 Rhododendron simsii HOM05D001431 ORTHO05D001268 3.6e-08 62.4 74 48.6
CAN.G628.72 Capsicum annuum HOM05D001431 ORTHO05D001268 4.8e-08 62.0 69 50.7
Cc00_g08860 Coffea canephora HOM05D001431 ORTHO05D001268 4.8e-08 62.0 86 44.2
Migut.I00039 Erythranthe guttata HOM05D001431 ORTHO05D001268 4.8e-08 62.0 82 46.3
Hma1.2p1_0176F.1_g077720 Hydrangea macrophylla HOM05D001431 ORTHO05D001268 4.8e-08 62.0 70 51.4
Psat4g057080 Pisum sativum HOM05D001431 ORTHO05D001268 4.8e-08 62.0 70 50.0
Sed0025664 Sechium edule HOM05D001431 ORTHO05D001268 4.8e-08 62.0 83 45.8
PGSC0003DMG400024488 Solanum tuberosum HOM05D001431 ORTHO05D001268 4.8e-08 62.0 69 47.8
TPR.G37484 Trifolium pratense HOM05D001431 ORTHO05D001268 4.8e-08 62.0 70 54.3
CSS0003284 Camellia sinensis var. sinensis HOM05D001431 ORTHO05D001268 6.2e-08 61.6 73 47.9
CsaV3_1G001650 Cucumis sativus L. HOM05D001431 ORTHO05D001268 6.2e-08 61.6 83 43.4
TWI15G0604 Tripterygium wilfordii HOM05D001431 ORTHO05D001268 6.2e-08 61.6 72 47.2
TWI15G0122 Tripterygium wilfordii HOM05D001431 ORTHO05D001268 8.1e-08 61.2 72 47.2
DCAR_016493 Daucus carota HOM05D001431 ORTHO05D001268 1.1e-07 60.8 70 47.1
Lsat_1_v5_gn_0_5740 Lactuca sativa HOM05D001431 ORTHO05D001268 1.1e-07 60.8 70 45.7
CSS0036833 Camellia sinensis var. sinensis HOM05D001431 ORTHO05D001268 1.4e-07 60.5 70 48.6
Ca_21904_v3 Cicer arietinum L. HOM05D001431 ORTHO05D001268 1.4e-07 60.5 70 51.4
Ca_21922_v3 Cicer arietinum L. HOM05D001431 ORTHO05D001268 1.4e-07 60.5 70 51.4
COL.COLO4_34066 Corchorus olitorius HOM05D001431 ORTHO05D001268 1.4e-07 60.5 72 48.6
Sabra15G0097900 Salix brachista HOM05D001431 ORTHO05D001268 1.4e-07 60.5 72 47.2
Solyc06g071370.1 Solanum lycopersicum HOM05D001431 ORTHO05D001268 1.4e-07 60.5 69 49.3
Sopen06g027650 Solanum pennellii HOM05D001431 ORTHO05D001268 1.4e-07 60.5 69 49.3
CSS0036657 Camellia sinensis var. sinensis HOM05D001431 ORTHO05D001268 1.8e-07 60.1 70 51.4
Cfa019090 Carpinus fangiana HOM05D001431 ORTHO05D001268 1.8e-07 60.1 74 48.6
FAN08G1461 Fragaria x ananassa HOM05D001431 ORTHO05D001268 1.8e-07 60.1 69 49.3
PGSC0003DMG400026998 Solanum tuberosum HOM05D001431 ORTHO05D001268 1.8e-07 60.1 69 49.3
TAR622G1254 Trochodendron aralioides HOM05D001431 ORTHO05D001268 1.8e-07 60.1 82 43.9
MELO3C002250.2 Cucumis melo HOM05D001431 ORTHO05D001268 2.4e-07 59.7 76 47.4
Nn3g16930 Nelumbo nucifera HOM05D001431 ORTHO05D001268 2.4e-07 59.7 73 46.6
Nitab4.5_0006831g0010 Nicotiana tabacum HOM05D007441 ORTHO05D009501 2.4e-07 59.7 82 46.3
Nitab4.5_0007803g0040 Nicotiana tabacum HOM05D001431 ORTHO05D001268 2.4e-07 59.7 82 46.3
Nitab4.5_0010542g0040 Nicotiana tabacum HOM05D007441 ORTHO05D001268 2.4e-07 59.7 82 46.3
Solyc03g114130.1 Solanum lycopersicum HOM05D001431 ORTHO05D001268 2.4e-07 59.7 69 47.8
Sopen03g033190 Solanum pennellii HOM05D001431 ORTHO05D001268 2.4e-07 59.7 69 47.8
SGA_v2.0_scaffold30G12483 Striga asiatica HOM05D001431 ORTHO05D001268 2.4e-07 59.7 72 51.4
Haze_07487 Corylus avellana HOM05D001431 ORTHO05D001268 3.1e-07 59.3 75 48.0
Lju41C33T14 Lonicera japonica HOM05D001431 ORTHO05D001268 3.1e-07 59.3 70 44.3
VMungo1215G3018 Vigna mungo HOM05D001431 ORTHO05D001268 3.1e-07 59.3 72 52.8
Ca_16200_v3 Cicer arietinum L. HOM05D001431 ORTHO05D001268 4.0e-07 58.9 71 49.3
TAR371G0497 Trochodendron aralioides HOM05D001431 ORTHO05D001268 4.0e-07 58.9 70 45.7
MBI14_g35398_MAGBIO Magnolia biondii HOM05D001431 ORTHO05D001268 5.3e-07 58.5 67 49.3
TWI60G1602 Tripterygium wilfordii HOM05D001431 ORTHO05D001268 5.3e-07 58.5 81 40.7
EL10Ac5g10788 Beta vulgaris HOM05D001431 ORTHO05D001268 6.9e-07 58.2 71 45.1
CDE10G0322 Ceratophyllum demersum HOM05D000154 ORTHO05D000092 6.9e-07 58.2 69 52.2
CDE10G0680 Ceratophyllum demersum HOM05D001431 ORTHO05D001268 6.9e-07 58.2 69 52.2
CsaV3_1G008340 Cucumis sativus L. HOM05D001431 ORTHO05D001268 6.9e-07 58.2 87 42.5
Migut.K01365 Erythranthe guttata HOM05D001431 ORTHO05D001268 6.9e-07 58.2 77 44.2
HanXRQChr06g0181721 Helianthus annuus HOM05D001431 ORTHO05D001268 6.9e-07 58.2 66 50.0
Lsat_1_v5_gn_7_47921 Lactuca sativa HOM05D001431 ORTHO05D001268 6.9e-07 58.2 66 47.0
MD17G1037700 Malus domestica HOM05D001431 ORTHO05D001268 6.9e-07 58.2 70 45.7
Medtr6g007727 Medicago truncatula HOM05D001431 ORTHO05D001268 6.9e-07 58.2 70 45.7
Rhsim08G0170200 Rhododendron simsii HOM05D001431 ORTHO05D001268 9.0e-07 57.8 72 52.8
DCAR_026123 Daucus carota HOM05D001431 ORTHO05D001268 1.2e-06 57.4 74 47.3
Eucgr.K02860 Eucalyptus grandis HOM05D001431 ORTHO05D001268 1.2e-06 57.4 87 44.8
Phvul.003G198600 Phaseolus vulgaris HOM05D001431 ORTHO05D001268 1.2e-06 57.4 70 50.0
Solyc05g039960.1 Solanum lycopersicum HOM05D001431 ORTHO05D001268 1.2e-06 57.4 70 44.3
unitig_750.g28474 Utricularia gibba HOM05D001431 ORTHO05D001268 1.2e-06 57.4 79 46.8
CAN.G206.43 Capsicum annuum HOM05D001431 ORTHO05D001268 1.5e-06 57.0 71 46.5
HanXRQChr02g0037191 Helianthus annuus HOM05D001431 ORTHO05D001268 1.5e-06 57.0 68 50.0
Hma1.2p1_0701F.1_g205980 Hydrangea macrophylla HOM05D001431 ORTHO05D001268 1.5e-06 57.0 78 44.9
Hma1.2p1_0967F.1_g242290 Hydrangea macrophylla HOM05D001431 ORTHO05D001268 1.5e-06 57.0 69 47.8
Medtr4g106650 Medicago truncatula HOM05D001431 ORTHO05D001268 1.5e-06 57.0 70 45.7
PGR083G2290 Punica granatum HOM05D001431 ORTHO05D001268 1.5e-06 57.0 83 47.0
Rhsim08G0056500 Rhododendron simsii HOM05D001431 ORTHO05D001268 1.5e-06 57.0 70 45.7
MELO3C021529.2 Cucumis melo HOM05D001431 ORTHO05D001268 2.0e-06 56.6 85 43.5
Dinv09164 Davidia involucrata HOM05D001431 ORTHO05D001268 2.0e-06 56.6 72 45.8
PSO063G3193 Papaver somniferum HOM05D001431 ORTHO05D001268 2.0e-06 56.6 70 41.4
PSO832G1465 Papaver somniferum HOM05D001431 ORTHO05D001268 2.0e-06 56.6 70 41.4
Sed0010044 Sechium edule HOM05D001431 ORTHO05D001268 2.0e-06 56.6 69 44.9
Solyc02g087030.1 Solanum lycopersicum HOM05D001431 ORTHO05D001268 2.0e-06 56.6 70 44.3
Sopen02g031790 Solanum pennellii HOM05D001431 ORTHO05D001268 2.0e-06 56.6 70 44.3
Nitab4.5_0001952g0050 Nicotiana tabacum HOM05D001431 ORTHO05D001268 2.6e-06 56.2 70 44.3
Nitab4.5_0007879g0040 Nicotiana tabacum HOM05D001431 ORTHO05D001268 2.6e-06 56.2 70 44.3
Oeu041568.1 Olea europaea HOM05D001431 ORTHO05D001268 2.6e-06 56.2 73 45.2
SalBow7G1530 Salvia bowleyana HOM05D001431 ORTHO05D001268 2.6e-06 56.2 70 45.7
CANSAT80G2321 Cannabis sativa HOM05D001431 ORTHO05D001268 3.4e-06 55.8 92 41.3
FvH4_6g50470 Fragaria vesca HOM05D001431 ORTHO05D001268 3.4e-06 55.8 88 42.0
FAN09G1609 Fragaria x ananassa HOM05D001431 ORTHO05D001268 3.4e-06 55.8 73 45.2
FAN14G2501 Fragaria x ananassa HOM05D001431 ORTHO05D001268 3.4e-06 55.8 88 42.0
Lalb_Chr13g0297891 Lupinus albus HOM05D001431 ORTHO05D001268 3.4e-06 55.8 70 45.7
Oeu062367.1 Olea europaea HOM05D001431 ORTHO05D001268 3.4e-06 55.8 74 41.9
Peaxi162Scf00017g00268 Petunia axillaris HOM05D001431 ORTHO05D001268 3.4e-06 55.8 70 47.1
SGA_v2.0_scaffold224G42972 Striga asiatica HOM05D001431 ORTHO05D001268 3.4e-06 55.8 71 49.3
TPR.G2305 Trifolium pratense HOM05D001431 ORTHO05D001268 3.4e-06 55.8 69 43.5
Duzib147G0546 Durio zibethinus HOM05D001431 ORTHO05D001268 4.5e-06 55.5 71 47.9
Glyma.17G091400 Glycine max HOM05D001431 ORTHO05D001268 4.5e-06 55.5 82 40.2
Lsat_1_v5_gn_1_26501 Lactuca sativa HOM05D001431 ORTHO05D001268 4.5e-06 55.5 71 47.9
Lsat_1_v5_gn_4_73061 Lactuca sativa HOM05D001431 ORTHO05D001268 4.5e-06 55.5 90 40.0
Lj1g0003513 Lotus japonicus HOM05D001431 ORTHO05D001268 4.5e-06 55.5 69 40.6
MD09G1036100 Malus domestica HOM05D001431 ORTHO05D001268 4.5e-06 55.5 69 43.5
unitig_62.g23460 Utricularia gibba HOM05D001431 ORTHO05D001268 4.5e-06 55.5 70 45.7
ClCG09G018820 Citrullus lanatus HOM05D001431 ORTHO05D001268 5.8e-06 55.1 69 44.9
COL.COLO4_04371 Corchorus olitorius HOM05D001431 ORTHO05D001268 5.8e-06 55.1 70 45.7
Dinv35043 Davidia involucrata HOM05D001431 ORTHO05D001268 5.8e-06 55.1 70 47.1
Prupe.3G281600 Prunus persica HOM05D001431 ORTHO05D001268 5.8e-06 55.1 69 47.8
TWI36G0629 Tripterygium wilfordii HOM05D001431 ORTHO05D001268 5.8e-06 55.1 70 48.6
SGA_v2.0_scaffold205G41709 Striga asiatica HOM05D000154 ORTHO05D000092 7.6e-06 54.7 80 40.0
C03p63860 Brassica napus HOM05D001431 ORTHO05D001268 9.9e-06 54.3 49 57.1
Ca_04210_v3 Cicer arietinum L. HOM05D001431 ORTHO05D001268 9.9e-06 54.3 69 43.5
ECA240G3019 Erigeron canadensis HOM05D001431 ORTHO05D001268 9.9e-06 54.3 67 50.7
Migut.H00140 Erythranthe guttata HOM05D001431 ORTHO05D001268 9.9e-06 54.3 74 39.2
Eucgr.I01828 Eucalyptus grandis HOM05D001431 ORTHO05D001268 9.9e-06 54.3 85 48.2
unitig_26.g8796 Utricularia gibba HOM05D001431 ORTHO05D001268 9.9e-06 54.3 67 50.7


User provided reference genes

Program Settings