Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00848 Brassica carinata HOM05D006711 ORTHO05D008104 1.6e-39 165.6 82 100.0
BcaC07g39289 Brassica carinata HOM05D006711 ORTHO05D008104 7.8e-39 163.3 82 98.8
A06p19610 Brassica napus HOM05D006711 ORTHO05D008104 7.8e-39 163.3 82 98.8
C08p22960 Brassica napus HOM05D006711 ORTHO05D008104 7.8e-39 163.3 82 98.8
BolC8t49933H Brassica oleracea HOM05D006711 ORTHO05D008104 7.8e-39 163.3 82 98.8
BraA06t25041Z Brassica rapa HOM05D006711 ORTHO05D008104 7.8e-39 163.3 82 98.8
Aa31LG4G16690 Aethionema arabicum HOM05D006711 ORTHO05D008104 1.9e-37 158.7 82 95.1
AL5G27360 Arabidopsis lyrata HOM05D006711 ORTHO05D008104 1.9e-37 158.7 82 95.1
CARHR156770 Cardamine hirsuta HOM05D006711 ORTHO05D008104 2.5e-37 158.3 81 95.1
Thhalv10010870m.g Eutrema salsugineum HOM05D006711 ORTHO05D008104 3.3e-37 157.9 82 93.9
Sp5g13950 Schrenkiella parvula HOM05D006711 ORTHO05D008104 4.3e-37 157.5 82 93.9
THA.LOC104821460 Tarenaya hassleriana HOM05D006711 ORTHO05D008104 3.1e-35 151.4 82 90.2
Aa31LG11G810 Aethionema arabicum HOM05D006711 ORTHO05D008104 1.2e-34 149.4 82 87.8
THA.LOC104798980 Tarenaya hassleriana HOM05D000086 ORTHO05D008104 5.8e-34 147.1 81 88.9
Potri.012G078000 Populus trichocarpa HOM05D006711 ORTHO05D008104 3.8e-33 144.4 81 86.4
Potri.015G073300 Populus trichocarpa HOM05D006711 ORTHO05D008104 3.8e-33 144.4 81 86.4
Sabra15G0097500 Salix brachista HOM05D006711 ORTHO05D008104 6.4e-33 143.7 81 85.2
Sabra12G0055800 Salix brachista HOM05D006711 ORTHO05D008104 1.4e-32 142.5 81 85.2
Manes.14G068400 Manihot esculenta HOM05D006711 ORTHO05D008104 4.2e-32 141.0 81 82.7
Duzib068G0631 Durio zibethinus HOM05D006711 ORTHO05D008104 5.4e-32 140.6 80 82.5
Gohir.D12G276600 Gossypium hirsutum HOM05D006711 ORTHO05D008104 5.4e-32 140.6 80 85.0
Gohir.A12G275900 Gossypium hirsutum HOM05D006711 ORTHO05D008104 7.1e-32 140.2 80 85.0
Gorai.008G297100 Gossypium raimondii HOM05D006711 ORTHO05D008104 7.1e-32 140.2 80 85.0
Thecc.03G007500 Theobroma cacao HOM05D006711 ORTHO05D008104 7.1e-32 140.2 80 82.5
Atru.chr9.2428 Acer truncatum HOM05D006711 ORTHO05D008104 1.2e-31 139.4 80 82.5
Cpa.g.sc134.10 Carica papaya HOM05D006711 ORTHO05D008104 1.2e-31 139.4 80 82.5
CsaV3_1G008300 Cucumis sativus L. HOM05D006711 ORTHO05D008104 1.2e-31 139.4 80 82.5
MELO3C002246.2 Cucumis melo HOM05D006711 ORTHO05D008104 2.1e-31 138.7 80 81.2
FvH4_5g05020 Fragaria vesca HOM05D006711 ORTHO05D008104 2.1e-31 138.7 81 81.5
FAN04G0211 Fragaria x ananassa HOM05D006711 ORTHO05D008104 2.1e-31 138.7 81 81.5
FAN08G2471 Fragaria x ananassa HOM05D006711 ORTHO05D008104 2.1e-31 138.7 81 81.5
FAN18G2156 Fragaria x ananassa HOM05D006711 ORTHO05D008104 2.1e-31 138.7 81 81.5
CANSAT11G1423 Cannabis sativa HOM05D006711 ORTHO05D008104 2.7e-31 138.3 80 83.8
FAN13G1278 Fragaria x ananassa HOM05D006711 ORTHO05D008104 4.6e-31 137.5 81 80.2
FAN18G1479 Fragaria x ananassa HOM05D006711 ORTHO05D008104 4.6e-31 137.5 81 80.2
COL.COLO4_24770 Corchorus olitorius HOM05D006711 ORTHO05D008104 6.0e-31 137.1 80 81.2
Medtr4g106700 Medicago truncatula HOM05D006711 ORTHO05D008104 6.0e-31 137.1 81 81.5
TPR.G37552 Trifolium pratense HOM05D006711 ORTHO05D008104 7.8e-31 136.7 80 83.8
MD06G1177900 Malus domestica HOM05D006711 ORTHO05D008104 1.0e-30 136.3 81 80.2
MD14G1184500 Malus domestica HOM05D006711 ORTHO05D008104 1.0e-30 136.3 81 80.2
Eucgr.K02867 Eucalyptus grandis HOM05D006711 ORTHO05D008104 1.3e-30 136.0 80 81.2
Duzib084G0075 Durio zibethinus HOM05D006711 ORTHO05D008104 3.0e-30 134.8 80 80.0
ClCG01G014050 Citrullus lanatus HOM05D006711 ORTHO05D008104 3.9e-30 134.4 80 78.8
Psat4g057240 Pisum sativum HOM05D006711 ORTHO05D008104 2.5e-29 131.7 81 79.0
arahy.Tifrunner.gnm1.ann1.5NY27E Arachis hypogaea HOM05D006711 ORTHO05D008104 3.3e-29 131.3 76 84.2
Cfa019085 Carpinus fangiana HOM05D006711 ORTHO05D008104 3.3e-29 131.3 80 78.8
Ca_21901_v3 Cicer arietinum L. HOM05D006711 ORTHO05D008104 3.3e-29 131.3 80 78.8
TWI15G0492 Tripterygium wilfordii HOM05D006711 ORTHO05D008104 3.3e-29 131.3 76 81.6
PGR044G2080 Punica granatum HOM05D006711 ORTHO05D008104 5.6e-29 130.6 77 80.5
Ciclev10023110m.g Citrus clementina HOM05D006711 ORTHO05D008104 7.3e-29 130.2 77 79.2
Prupe.5G177100 Prunus persica HOM05D006711 ORTHO05D008104 7.3e-29 130.2 81 75.3
Sed0004980 Sechium edule HOM05D006711 ORTHO05D008104 7.3e-29 130.2 81 75.3
Migut.N03365 Erythranthe guttata HOM05D006711 ORTHO05D008104 9.6e-29 129.8 76 82.9
Lj4g0001750 Lotus japonicus HOM05D006711 ORTHO05D008104 9.6e-29 129.8 79 79.7
CiPaw.12G024900 Carya illinoinensis HOM05D006711 ORTHO05D008104 1.6e-28 129.0 92 71.7
Sc04g0001970 Simmondsia chinensis HOM05D006711 ORTHO05D008104 2.8e-28 128.3 76 84.2
PSO832G1815 Papaver somniferum HOM05D006711 ORTHO05D008104 4.8e-28 127.5 80 73.8
SalBow6G5258 Salvia bowleyana HOM05D006711 ORTHO05D008104 8.1e-28 126.7 76 81.6
EL10Ac5g10797 Beta vulgaris HOM05D006711 ORTHO05D008104 1.1e-27 126.3 76 82.9
PSO063G1690 Papaver somniferum HOM05D006711 ORTHO05D008104 1.8e-27 125.6 77 75.3
Phvul.003G198200 Phaseolus vulgaris HOM05D006711 ORTHO05D008104 4.0e-27 124.4 70 85.7
Hma1.2p1_0697F.1_g204840 Hydrangea macrophylla HOM05D006711 ORTHO05D008104 5.3e-27 124.0 76 77.6
Glyma.05G035600 Glycine max HOM05D006711 ORTHO05D008104 9.0e-27 123.2 70 84.3
Ah.10g035450 Amaranthus hybridus HOM05D006711 ORTHO05D008104 1.2e-26 122.9 77 79.2
Actinidia33966 Actinidia chinensis HOM05D006711 ORTHO05D008104 2.0e-26 122.1 76 78.9
DCAR_011220 Daucus carota HOM05D006711 ORTHO05D008104 2.0e-26 122.1 76 78.9
AUR62031000 Chenopodium quinoa HOM05D006711 ORTHO05D008104 2.6e-26 121.7 73 80.8
Oeu047317.1 Olea europaea HOM05D006711 ORTHO05D008104 2.6e-26 121.7 70 84.3
Oeu059193.1 Olea europaea HOM05D006711 ORTHO05D008104 3.4e-26 121.3 76 76.3
Hund09419 Selenicereus undatus HOM05D006711 ORTHO05D008104 5.8e-26 120.6 73 82.2
Carub.0005s1414 Capsella rubella HOM05D000086 ORTHO05D008104 7.6e-26 120.2 68 88.2
MBI15_g24174_MAGBIO Magnolia biondii HOM05D006711 ORTHO05D008104 7.6e-26 120.2 69 85.5
Aqoxy3G00948 Aquilegia oxysepala HOM05D006711 ORTHO05D008104 1.3e-25 119.4 70 80.0
Cc07_g02450 Coffea canephora HOM05D006711 ORTHO05D008104 2.2e-25 118.6 70 84.3
PSO478G1559 Papaver somniferum HOM05D006711 ORTHO05D008104 2.9e-25 118.2 81 70.4
Sopen11g029530 Solanum pennellii HOM05D006711 ORTHO05D008104 6.4e-25 117.1 77 72.7
vmacro05808 Vaccinium macrocarpon HOM05D006711 ORTHO05D008104 6.4e-25 117.1 76 76.3
CDE10G0118 Ceratophyllum demersum HOM05D001322 ORTHO05D001301 8.4e-25 116.7 72 75.0
HanXRQChr09g0265981 Helianthus annuus HOM05D006711 ORTHO05D008104 8.4e-25 116.7 74 77.0
ATR1149G012 Amborella trichopoda HOM05D006711 ORTHO05D008104 1.1e-24 116.3 71 83.1
CAN.G742.33 Capsicum annuum HOM05D006711 ORTHO05D008104 1.1e-24 116.3 77 72.7
CDE10G0426 Ceratophyllum demersum HOM05D006711 ORTHO05D008104 1.1e-24 116.3 79 70.9
PSO017G6527 Papaver somniferum HOM05D006711 ORTHO05D008104 1.4e-24 115.9 81 70.4
Peaxi162Scf00429g00118 Petunia axillaris HOM05D006711 ORTHO05D008104 1.4e-24 115.9 77 71.4
GSVIVG01007800001 Vitis vinifera HOM05D006711 ORTHO05D008104 1.4e-24 115.9 69 79.7
GSVIVG01032507001 Vitis vinifera HOM05D006711 ORTHO05D008104 2.4e-24 115.2 76 72.4
Lsat_1_v5_gn_4_181601 Lactuca sativa HOM05D006711 ORTHO05D008104 3.2e-24 114.8 74 77.0
Sed0016611 Sechium edule HOM05D006711 ORTHO05D008104 4.2e-24 114.4 80 70.0
HPP92_010905 Vanilla planifolia HOM05D006711 ORTHO05D008104 5.4e-24 114.0 76 75.0
HPP92_010907 Vanilla planifolia HOM05D006711 ORTHO05D008104 5.4e-24 114.0 76 75.0
Nitab4.5_0004762g0010 Nicotiana tabacum HOM05D006711 ORTHO05D008104 2.1e-23 112.1 77 68.8
Nitab4.5_0002792g0010 Nicotiana tabacum HOM05D006711 ORTHO05D008104 1.0e-22 109.8 77 67.5
unitig_46.g17997 Utricularia gibba HOM05D006711 ORTHO05D008104 3.0e-22 108.2 102 59.8
Oeu006591.3 Olea europaea HOM05D006711 ORTHO05D008104 3.9e-22 107.8 99 58.6
AUR62008246 Chenopodium quinoa HOM05D001451 ORTHO05D008104 5.1e-22 107.5 64 82.8
HanXRQChr12g0385511 Helianthus annuus HOM05D006711 ORTHO05D008104 1.5e-21 105.9 76 68.4
Zm00001eb311470 Zea mays HOM05D006711 ORTHO05D008104 1.9e-21 105.5 70 77.1
RcHm_v2.0_Chr7g0194021 Rosa chinensis HOM05D006711 ORTHO05D008104 4.3e-21 104.4 56 91.1
CiPaw.11G029900 Carya illinoinensis HOM05D006711 ORTHO05D008104 7.4e-21 103.6 67 76.1
Os09g0375900 Oryza sativa ssp. japonica HOM05D006711 ORTHO05D008104 1.3e-20 102.8 68 75.0
Lalb_Chr12g0201501 Lupinus albus HOM05D006711 ORTHO05D008104 1.6e-20 102.4 67 77.6
QL10p013547 Quercus lobata HOM05D006711 ORTHO05D008104 3.7e-20 101.3 145 41.4
Haze_07479 Corylus avellana HOM05D006711 ORTHO05D008104 1.1e-19 99.8 55 87.3
SEGI_30617 Sequoiadendron giganteum HOM05D006711 ORTHO05D008104 3.1e-19 98.2 68 69.1
Eucgr.J02179 Eucalyptus grandis HOM05D006711 ORTHO05D008104 5.3e-19 97.4 67 68.7
PGSC0003DMG400003004 Solanum tuberosum HOM05D006711 ORTHO05D008104 5.3e-19 97.4 122 46.7
TAR622G0690 Trochodendron aralioides HOM05D001464 ORTHO05D002836 1.2e-18 96.3 77 64.9
CBR_g49624 Chara braunii HOM05D006711 ORTHO05D008104 3.8e-17 91.3 65 70.8
Rhsim10G0024700 Rhododendron simsii HOM05D006711 ORTHO05D008104 1.1e-16 89.7 52 88.5
Rhsim10G0024900 Rhododendron simsii HOM05D006711 ORTHO05D008104 1.9e-16 89.0 55 85.5
Nn4g22854 Nelumbo nucifera HOM05D006711 ORTHO05D008104 3.2e-16 88.2 56 76.8
Rhsim08G0056600 Rhododendron simsii HOM05D000086 ORTHO05D000983 4.2e-16 87.8 78 59.0
Mapoly0124s0028 Marchantia polymorpha HOM05D006711 ORTHO05D008104 7.1e-16 87.0 67 67.2
CSS0024346 Camellia sinensis var. sinensis HOM05D006711 ORTHO05D008104 1.2e-15 86.3 52 82.7
Pp3c14_16830 Physcomitrium patens HOM05D006711 ORTHO05D008104 1.2e-15 86.3 72 59.7
PRCOL_00004863 Prasinoderma coloniale HOM05D006711 ORTHO05D008104 6.7e-14 80.5 80 56.2
ATR0820G148 Amborella trichopoda HOM05D006711 ORTHO05D008104 1.1e-13 79.7 62 69.4
Pp3c3_16770 Physcomitrium patens HOM05D006711 ORTHO05D008104 1.1e-13 79.7 62 69.4
AagrBONN_evm.TU.Sc2ySwM_368.1224 Anthoceros agrestis HOM05D006711 ORTHO05D008104 1.9e-13 79.0 64 64.1
ATR0661G003 Amborella trichopoda HOM05D006711 ORTHO05D008104 2.1e-12 75.5 60 68.3
HPP92_016979 Vanilla planifolia HOM05D006711 ORTHO05D008104 7.1e-08 60.5 35 85.7
Dinv35040 Davidia involucrata HOM05D006711 ORTHO05D008104 1.6e-07 59.3 39 79.5
Nn3g16941 Nelumbo nucifera HOM05D006711 ORTHO05D008104 3.9e-06 54.7 50 54.0
SHI34267 Sapria himalayana HOM05D006711 ORTHO05D008104 3.9e-06 54.7 34 82.4


User provided reference genes

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