Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00844 Brassica carinata HOM05D006566 ORTHO05D004366 2.5e-136 489.2 324 100.0
BcaC07g39294 Brassica carinata HOM05D006566 ORTHO05D004366 2.2e-121 439.5 324 90.1
BolC8t49939H Brassica oleracea HOM05D006566 ORTHO05D004366 2.2e-121 439.5 324 90.1
C08p23010 Brassica napus HOM05D006566 ORTHO05D004366 5.5e-120 434.9 324 88.6
Sp5g13910 Schrenkiella parvula HOM05D006566 ORTHO05D004366 2.6e-109 399.4 328 85.4
BcaC07g39293 Brassica carinata HOM05D006566 ORTHO05D004366 4.4e-109 398.7 324 84.6
A06p19570 Brassica napus HOM05D006566 ORTHO05D004366 3.7e-108 395.6 324 87.3
CARHR156850 Cardamine hirsuta HOM05D006566 ORTHO05D004366 1.6e-103 380.2 350 71.1
Carub.0005s1423 Capsella rubella HOM05D006566 ORTHO05D004366 4.4e-101 372.1 344 75.3
AT3G48120 Arabidopsis thaliana HOM05D006566 ORTHO05D004366 4.8e-100 368.6 345 72.2
BraA06t25037Z Brassica rapa HOM05D006566 ORTHO05D004366 1.4e-99 367.1 310 86.5
AL5G27450 Arabidopsis lyrata HOM05D006566 ORTHO05D004366 3.5e-98 362.5 340 72.4
Thhalv10010547m.g Eutrema salsugineum HOM05D006566 ORTHO05D004366 2.3e-97 359.8 329 79.0
Aa31LG4G16730 Aethionema arabicum HOM05D006566 ORTHO05D004366 2.6e-85 319.7 338 70.4
THA.LOC104821469 Tarenaya hassleriana HOM05D006566 ORTHO05D004366 2.1e-74 283.5 332 71.7
Manes.06G099800 Manihot esculenta HOM05D006566 ORTHO05D004366 3.6e-63 246.1 357 59.7
Atru.chr9.2391 Acer truncatum HOM05D006566 ORTHO05D004366 1.5e-61 240.7 336 59.5
Cpa.g.sc35.28 Carica papaya HOM05D006566 ORTHO05D004366 1.5e-61 240.7 337 64.7
Potri.015G070100 Populus trichocarpa HOM05D006566 ORTHO05D004366 7.6e-61 238.4 345 58.6
Aqoxy3G00871 Aquilegia oxysepala HOM05D006566 ORTHO05D004366 1.3e-60 237.7 344 64.2
Thecc.03G002700 Theobroma cacao HOM05D006566 ORTHO05D004366 2.9e-60 236.5 359 63.0
Sabra15G0094200 Salix brachista HOM05D006566 ORTHO05D004366 3.8e-60 236.1 344 61.6
COL.COLO4_21450 Corchorus olitorius HOM05D006566 ORTHO05D004366 1.9e-59 233.8 333 60.1
vmacro16583 Vaccinium macrocarpon HOM05D006566 ORTHO05D004366 1.9e-59 233.8 334 58.7
CANSAT80G0898 Cannabis sativa HOM05D006566 ORTHO05D004366 3.2e-59 233.0 362 57.7
CsaV3_1G008150 Cucumis sativus L. HOM05D006566 ORTHO05D004366 5.4e-59 232.3 368 55.4
Sed0021978 Sechium edule HOM05D006566 ORTHO05D004366 9.3e-59 231.5 360 53.6
QL10p013685 Quercus lobata HOM05D006566 ORTHO05D004366 1.6e-58 230.7 331 60.7
Ca_21878_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 6.0e-58 228.8 356 57.6
Ca_21886_v3 Cicer arietinum L. HOM05D006566 ORTHO05D004366 6.0e-58 228.8 356 57.6
Eucgr.K02884 Eucalyptus grandis HOM05D006566 ORTHO05D004366 2.3e-57 226.9 368 61.4
Psat4g055720 Pisum sativum HOM05D006566 ORTHO05D004366 3.0e-57 226.5 377 54.9
MD06G1182300 Malus domestica HOM05D006566 ORTHO05D004366 6.6e-57 225.3 343 61.5
CSS0042495 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 2.5e-56 223.4 346 61.3
VMungo1215G1614 Vigna mungo HOM05D006566 ORTHO05D004366 2.5e-56 223.4 350 56.6
Gorai.004G113800 Gossypium raimondii HOM05D006566 ORTHO05D004366 5.6e-56 222.2 351 54.1
Actinidia34964 Actinidia chinensis HOM05D006566 ORTHO05D004366 1.6e-55 220.7 337 62.0
RcHm_v2.0_Chr7g0179841 Rosa chinensis HOM05D006566 ORTHO05D004366 2.1e-55 220.3 350 61.1
Solyc12g027740.3 Solanum lycopersicum HOM05D006566 ORTHO05D004366 3.6e-55 219.5 333 52.9
TPR.G38369 Trifolium pratense HOM05D006566 ORTHO05D004366 6.2e-55 218.8 379 52.5
Glyma.05G033200 Glycine max HOM05D006566 ORTHO05D004366 8.1e-55 218.4 328 58.2
Medtr4g106550 Medicago truncatula HOM05D006566 ORTHO05D004366 8.1e-55 218.4 384 52.6
Sopen12g012820 Solanum pennellii HOM05D006566 ORTHO05D004366 1.4e-54 217.6 349 55.0
CiPaw.12G022600 Carya illinoinensis HOM05D006566 ORTHO05D004366 1.8e-54 217.2 380 54.2
Gohir.D08G106700 Gossypium hirsutum HOM05D006566 ORTHO05D004366 1.8e-54 217.2 351 51.6
ECA246G4585 Erigeron canadensis HOM05D006566 ORTHO05D004366 5.3e-54 215.7 332 57.5
Lj4g0023975 Lotus japonicus HOM05D006566 ORTHO05D004366 5.3e-54 215.7 363 55.1
TAR374G0618 Trochodendron aralioides HOM05D006566 ORTHO05D004366 5.3e-54 215.7 366 56.0
GSVIVG01007834001 Vitis vinifera HOM05D006566 ORTHO05D004366 1.5e-53 214.2 327 47.1
Glyma.17G093800 Glycine max HOM05D006566 ORTHO05D004366 2.0e-53 213.8 329 58.7
CSS0033214 Camellia sinensis var. sinensis HOM05D006566 ORTHO05D004366 4.4e-53 212.6 329 56.2
Actinidia19077 Actinidia chinensis HOM05D006566 ORTHO05D004366 7.6e-53 211.8 334 46.7
CAN.G1932.4 Capsicum annuum HOM05D006566 ORTHO05D004366 9.9e-53 211.5 360 57.2
Prupe.5G180400 Prunus persica HOM05D006566 ORTHO05D004366 9.9e-53 211.5 367 58.9
Phvul.003G196400 Phaseolus vulgaris HOM05D006566 ORTHO05D004366 1.3e-52 211.1 360 54.7
MD14G1188300 Malus domestica HOM05D006566 ORTHO05D004366 2.9e-52 209.9 359 57.7
PSO161G0080 Papaver somniferum HOM05D006566 ORTHO05D004366 2.9e-52 209.9 374 55.9
FAN08G1664 Fragaria x ananassa HOM05D006566 ORTHO05D004366 3.8e-52 209.5 348 57.5
FAN13G1045 Fragaria x ananassa HOM05D006566 ORTHO05D004366 8.4e-52 208.4 346 58.7
ClCG01G014160 Citrullus lanatus HOM05D006566 ORTHO05D004366 1.1e-51 208.0 365 51.2
Nn3g17040 Nelumbo nucifera HOM05D006566 ORTHO05D004366 1.9e-51 207.2 379 56.7
SGA_v2.0_scaffold56G20079 Striga asiatica HOM05D006566 ORTHO05D004366 2.4e-51 206.8 342 58.2
Lsat_1_v5_gn_5_18061 Lactuca sativa HOM05D006566 ORTHO05D004366 1.2e-50 204.5 349 57.0
Lalb_Chr07g0182501 Lupinus albus HOM05D006566 ORTHO05D004366 1.2e-50 204.5 357 54.3
arahy.Tifrunner.gnm1.ann1.0W0WAG Arachis hypogaea HOM05D006566 ORTHO05D004366 2.1e-50 203.8 380 52.1
PGR044G1407 Punica granatum HOM05D006566 ORTHO05D004366 2.7e-50 203.4 348 55.2
arahy.Tifrunner.gnm1.ann1.1VUR4R Arachis hypogaea HOM05D006566 ORTHO05D004366 3.5e-50 203.0 381 53.0
FAN04G3214 Fragaria x ananassa HOM05D006566 ORTHO05D004366 6.0e-50 202.2 349 55.6
FvH4_5g16290 Fragaria vesca HOM05D006566 ORTHO05D004366 5.1e-49 199.1 356 55.1
FAN18G1223 Fragaria x ananassa HOM05D006566 ORTHO05D004366 1.1e-48 198.0 356 54.8
Nitab4.5_0000026g0410 Nicotiana tabacum HOM05D006566 ORTHO05D004366 1.1e-48 198.0 330 43.9
Nitab4.5_0003577g0010 Nicotiana tabacum HOM05D006566 ORTHO05D004366 4.3e-48 196.1 331 43.5
HanXRQChr14g0438811 Helianthus annuus HOM05D006566 ORTHO05D004366 7.3e-48 195.3 356 54.8
MELO3C002232.2 Cucumis melo HOM05D006566 ORTHO05D004366 6.2e-47 192.2 369 53.7
MBI16_g07135_MAGBIO Magnolia biondii HOM05D006566 ORTHO05D004366 1.5e-45 187.6 362 39.5
MSTRG.23070 Avicennia marina HOM05D006566 ORTHO05D004366 2.6e-45 186.8 355 53.2
Migut.I00099 Erythranthe guttata HOM05D006566 ORTHO05D004366 5.8e-45 185.7 338 53.3
unitig_749.g13457 Utricularia gibba HOM05D006566 ORTHO05D004366 5.8e-45 185.7 339 52.8
Cc04_g16230 Coffea canephora HOM05D006566 ORTHO05D004366 1.1e-43 181.4 359 49.9
EL10Ac5g10849 Beta vulgaris HOM05D006566 ORTHO05D004366 1.9e-43 180.6 389 47.3
Zm00001eb156370 Zea mays HOM05D006566 ORTHO05D004366 1.2e-42 177.9 336 51.8
Ah.11g046290 Amaranthus hybridus HOM05D006566 ORTHO05D004366 2.1e-42 177.2 378 51.3
AUR62008294 Chenopodium quinoa HOM05D006566 ORTHO05D004366 2.1e-42 177.2 395 46.1
Cfa019059 Carpinus fangiana HOM05D006566 ORTHO05D004366 7.9e-42 175.3 348 54.9
Hma1.2p1_0572F.1_g181020 Hydrangea macrophylla HOM05D006566 ORTHO05D004366 2.1e-39 167.2 326 46.9
Rhsim12G0161000 Rhododendron simsii HOM05D006566 ORTHO05D004366 8.1e-39 165.2 342 41.2
ATR0712G004 Amborella trichopoda HOM05D006566 ORTHO05D004366 3.1e-38 163.3 376 44.9
AUR62031056 Chenopodium quinoa HOM05D006566 ORTHO05D004366 4.0e-38 162.9 285 52.6
Os01g0687600 Oryza sativa ssp. japonica HOM05D006566 ORTHO05D004366 4.0e-38 162.9 345 44.1
Sabra15G0095700 Salix brachista HOM05D006566 ORTHO05D004366 8.4e-36 155.2 161 58.4
Sabra15G0094500 Salix brachista HOM05D006566 ORTHO05D004366 2.5e-35 153.7 158 57.0
Oeu005686.3 Olea europaea HOM05D006566 ORTHO05D004366 6.0e-34 149.1 337 39.8
Dinv13130 Davidia involucrata HOM05D006566 ORTHO05D004366 3.9e-33 146.4 267 58.1
Hund02706 Selenicereus undatus HOM05D006566 ORTHO05D004366 2.8e-31 140.2 400 43.8
CDE06G0758 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 4.8e-31 139.4 152 55.9
DCAR_026101 Daucus carota HOM05D006566 ORTHO05D004366 7.6e-29 132.1 126 59.5
Gohir.A08G095200 Gossypium hirsutum HOM05D006566 ORTHO05D004366 2.2e-28 130.6 249 56.2
Haze_07429 Corylus avellana HOM05D006566 ORTHO05D004366 3.5e-26 123.2 193 44.0
arahy.Tifrunner.gnm1.ann1.JH7UH9 Arachis hypogaea HOM05D006566 ORTHO05D004366 2.5e-24 117.1 124 53.2
SalBow5G4198 Salvia bowleyana HOM05D006566 ORTHO05D004366 4.3e-24 116.3 125 52.0
SEGI_22753 Sequoiadendron giganteum HOM05D006566 ORTHO05D004366 4.8e-23 112.8 183 41.5
Sc04g0002180 Simmondsia chinensis HOM05D006566 ORTHO05D004366 2.4e-22 110.5 283 48.1
Mapoly0207s0010 Marchantia polymorpha HOM05D006566 ORTHO05D004366 3.4e-21 106.7 191 38.7
AagrBONN_evm.TU.Sc2ySwM_344.1183 Anthoceros agrestis HOM05D006566 ORTHO05D004366 2.2e-20 104.0 399 34.6
Ciclev10023573m.g Citrus clementina HOM05D006566 ORTHO05D004366 4.2e-19 99.8 153 43.8
Pp3c10_4330 Physcomitrium patens HOM05D006566 ORTHO05D004366 1.8e-17 94.4 170 37.6
HPP92_021882 Vanilla planifolia HOM05D006566 ORTHO05D004366 3.0e-17 93.6 276 45.3
Lj5P120T28 Lonicera japonica HOM05D006566 ORTHO05D004366 3.3e-16 90.1 86 64.0
Peaxi162Scf00496g00038 Petunia axillaris HOM05D006566 ORTHO05D004366 1.3e-15 88.2 94 55.3
arahy.Tifrunner.gnm1.ann1.SD125V Arachis hypogaea HOM05D006566 ORTHO05D004366 3.7e-15 86.7 106 46.2
SMO367G0338 Selaginella moellendorffii HOM05D013869 ORTHO05D015602 3.7e-15 86.7 169 36.7
arahy.Tifrunner.gnm1.ann1.USZI6Q Arachis hypogaea HOM05D006566 ORTHO05D004366 2.0e-13 80.9 106 47.2
CDE06G1032 Ceratophyllum demersum HOM05D006566 ORTHO05D004366 2.6e-13 80.5 109 53.2
Lj5A120T53 Lonicera japonica HOM05D006566 ORTHO05D004366 1.0e-12 78.6 93 46.2
Nn2g10835 Nelumbo nucifera HOM05D006566 ORTHO05D004366 8.5e-12 75.5 67 67.2
Nn8g38961 Nelumbo nucifera HOM05D006566 ORTHO05D004366 1.6e-10 71.2 67 67.2
arahy.Tifrunner.gnm1.ann1.281UCZ Arachis hypogaea HOM05D008215 ORTHO05D004366 2.0e-08 64.3 114 38.6
arahy.Tifrunner.gnm1.ann1.08U2RY Arachis hypogaea HOM05D008215 ORTHO05D004366 5.7e-08 62.8 74 45.9
arahy.Tifrunner.gnm1.ann1.UC8GQG Arachis hypogaea HOM05D008215 ORTHO05D004366 5.7e-08 62.8 113 37.2
arahy.Tifrunner.gnm1.ann1.8QJJ59 Arachis hypogaea HOM05D008215 ORTHO05D004366 7.4e-08 62.4 110 38.2
arahy.Tifrunner.gnm1.ann1.P43TQX Arachis hypogaea HOM05D006566 ORTHO05D004366 1.7e-07 61.2 44 65.9
arahy.Tifrunner.gnm1.ann1.P21766 Arachis hypogaea HOM05D008215 ORTHO05D004366 8.2e-07 58.9 123 36.6
arahy.Tifrunner.gnm1.ann1.38ZYM9 Arachis hypogaea HOM05D008215 ORTHO05D004366 2.4e-06 57.4 81 42.0
arahy.Tifrunner.gnm1.ann1.N3K4CS Arachis hypogaea HOM05D008215 ORTHO05D004366 5.3e-06 56.2 109 39.4


User provided reference genes

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