Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00822 Brassica carinata HOM05D008478 ORTHO05D000925 6.6e-51 203.8 104 100.0
BcaC09g51831 Brassica carinata HOM05D001239 ORTHO05D000925 2.7e-36 155.2 115 70.4
BolC1t00846H Brassica oleracea HOM05D001239 ORTHO05D000925 2.7e-36 155.2 115 70.4
BcaC07g37243 Brassica carinata HOM05D000003 ORTHO05D000925 2.5e-34 148.7 115 70.4
BolC8t47511H Brassica oleracea HOM05D001239 ORTHO05D000925 2.5e-34 148.7 115 70.4
BcaB06g28514 Brassica carinata HOM05D001239 ORTHO05D000925 1.5e-31 139.4 115 64.3
BcaC03g15329 Brassica carinata HOM05D001239 ORTHO05D000925 1.4e-29 132.9 115 63.5
BolC9t58964H Brassica oleracea HOM05D008478 ORTHO05D000925 9.3e-29 130.2 112 61.6
BcaC02g09573 Brassica carinata HOM05D001239 ORTHO05D000925 2.7e-28 128.6 112 60.7
BolC4t26004H Brassica oleracea HOM05D008478 ORTHO05D000925 2.7e-28 128.6 112 60.7
A02p15660 Brassica napus HOM05D008478 ORTHO05D000925 5.1e-27 124.4 112 58.9
A06p41350 Brassica napus HOM05D008478 ORTHO05D000925 6.7e-27 124.0 111 61.3
BolC7t45952H Brassica oleracea HOM05D008478 ORTHO05D000925 6.7e-27 124.0 111 58.6
BraA02t06627Z Brassica rapa HOM05D008478 ORTHO05D000925 6.7e-27 124.0 112 58.0
BraA07t27837Z Brassica rapa HOM05D000003 ORTHO05D000004 6.7e-27 124.0 111 61.3
BolC8t52815H Brassica oleracea HOM05D001239 ORTHO05D000925 1.1e-26 123.2 111 60.4
BolC9t58145H Brassica oleracea HOM05D001239 ORTHO05D000925 3.3e-26 121.7 109 61.5
A04p26810 Brassica napus HOM05D008478 ORTHO05D000925 9.6e-26 120.2 111 59.5
BcaC06g36207 Brassica carinata HOM05D000003 ORTHO05D015459 4.8e-25 117.9 96 62.5
BcaB03g15427 Brassica carinata HOM05D001239 ORTHO05D000925 1.4e-24 116.3 112 57.1
BcaB08g35549 Brassica carinata HOM05D001239 ORTHO05D000925 2.6e-23 112.1 105 60.0
BcaC06g34500 Brassica carinata HOM05D000003 ORTHO05D000925 3.3e-18 95.1 112 50.0
BraA07t28030Z Brassica rapa HOM05D008478 ORTHO05D000925 1.2e-15 86.7 85 54.1
BolC1t04461H Brassica oleracea HOM05D001239 ORTHO05D000925 1.5e-15 86.3 59 71.2
BraA06t24059Z Brassica rapa HOM05D001239 ORTHO05D000925 6.5e-14 80.9 109 42.2
C09p58650 Brassica napus HOM05D001239 ORTHO05D000925 8.5e-14 80.5 54 72.2
BolC7t43314H Brassica oleracea HOM05D008478 ORTHO05D000925 8.5e-14 80.5 79 55.7
BcaB02g09878 Brassica carinata HOM05D000496 ORTHO05D000411 1.9e-13 79.3 112 42.9
AL3G48000 Arabidopsis lyrata HOM05D012944 ORTHO05D014028 2.5e-13 79.0 112 40.2
C02p60300 Brassica napus HOM05D008478 ORTHO05D000925 2.5e-13 79.0 79 54.4
BcaC03g15116 Brassica carinata HOM05D000496 ORTHO05D000411 3.2e-13 78.6 109 42.2
AL1G55340 Arabidopsis lyrata HOM05D001239 ORTHO05D000925 7.2e-13 77.4 112 39.3
BcaB08g34848 Brassica carinata HOM05D000496 ORTHO05D000411 7.2e-13 77.4 114 38.6
AL7G15770 Arabidopsis lyrata HOM05D011429 ORTHO05D000925 1.2e-12 76.6 110 43.6
BraA02t04989Z Brassica rapa HOM05D000003 ORTHO05D000925 1.2e-12 76.6 109 42.2
BraA07t29530Z Brassica rapa HOM05D001239 ORTHO05D000925 1.2e-12 76.6 109 42.2
AL3G32130 Arabidopsis lyrata HOM05D011429 ORTHO05D000925 2.1e-12 75.9 109 42.2
BolC9t56299H Brassica oleracea HOM05D001239 ORTHO05D000925 6.1e-12 74.3 113 41.6
BcaC06g34152 Brassica carinata HOM05D000496 ORTHO05D000411 7.9e-12 73.9 109 41.3
BcaC05g27689 Brassica carinata HOM05D001239 ORTHO05D000925 1.0e-11 73.6 112 46.4
BcaC08g46847 Brassica carinata HOM05D000496 ORTHO05D000411 1.0e-11 73.6 112 42.9
C07p26790 Brassica napus HOM05D001239 ORTHO05D000925 1.4e-11 73.2 113 40.7
C06p00890 Brassica napus HOM05D001239 ORTHO05D000925 3.0e-11 72.0 109 42.2
A01p06330 Brassica napus HOM05D008478 ORTHO05D027660 3.9e-11 71.6 87 49.4
BraA02t05251Z Brassica rapa HOM05D008478 ORTHO05D027660 3.9e-11 71.6 87 49.4
BolC4t26600H Brassica oleracea HOM05D001239 ORTHO05D000925 5.1e-11 71.2 52 67.3
BolC7t43208H Brassica oleracea HOM05D001239 ORTHO05D000925 5.1e-11 71.2 113 39.8
Sp4g05790 Schrenkiella parvula HOM05D001239 ORTHO05D000925 8.8e-11 70.5 112 38.4
BraA03t15429Z Brassica rapa HOM05D001239 ORTHO05D000925 1.1e-10 70.1 109 41.3
BcaB01g03994 Brassica carinata HOM05D008478 ORTHO05D013784 1.5e-10 69.7 91 51.6
BcaNung00355 Brassica carinata HOM05D008478 ORTHO05D013784 1.5e-10 69.7 91 51.6
A08p33830 Brassica napus HOM05D001239 ORTHO05D000925 2.0e-10 69.3 109 39.4
BolC5t34840H Brassica oleracea HOM05D001239 ORTHO05D000925 2.0e-10 69.3 109 38.5
AL251U10020 Arabidopsis lyrata HOM05D011429 ORTHO05D000925 2.5e-10 68.9 109 37.6
BcaC08g45723 Brassica carinata HOM05D001239 ORTHO05D000925 2.5e-10 68.9 117 40.2
BolC7t42937H Brassica oleracea HOM05D001239 ORTHO05D000925 2.5e-10 68.9 109 38.5
BcaB03g14160 Brassica carinata HOM05D000496 ORTHO05D000411 3.3e-10 68.6 109 41.3
BcaB04g18173 Brassica carinata HOM05D001239 ORTHO05D000925 3.3e-10 68.6 96 46.9
BolC4t23673H Brassica oleracea HOM05D001239 ORTHO05D000925 4.3e-10 68.2 109 38.5
BraA01t00376Z Brassica rapa HOM05D001239 ORTHO05D000925 5.7e-10 67.8 108 39.8
BcaB01g02635 Brassica carinata HOM05D008478 ORTHO05D013784 7.4e-10 67.4 91 51.6
BcaB04g17537 Brassica carinata HOM05D008478 ORTHO05D016555 7.4e-10 67.4 90 51.1
BcaC07g39054 Brassica carinata HOM05D001239 ORTHO05D000925 7.4e-10 67.4 108 38.0
C05p19460 Brassica napus HOM05D001239 ORTHO05D000925 7.4e-10 67.4 114 38.6
BcaC03g13424 Brassica carinata HOM05D001239 ORTHO05D000925 9.7e-10 67.0 116 42.2
A09p69400 Brassica napus HOM05D000489 ORTHO05D000372 9.7e-10 67.0 109 37.6
BolC2t06689H Brassica oleracea HOM05D001239 ORTHO05D000925 9.7e-10 67.0 116 42.2
BolC8t51140H Brassica oleracea HOM05D001239 ORTHO05D000925 9.7e-10 67.0 109 38.5
BolC8t52932H Brassica oleracea HOM05D000489 ORTHO05D012282 9.7e-10 67.0 109 37.6
BolC5t34092H Brassica oleracea HOM05D001239 ORTHO05D000925 1.3e-09 66.6 98 40.8
A07p11610 Brassica napus HOM05D008478 ORTHO05D000925 1.7e-09 66.2 65 55.4
C02p34640 Brassica napus HOM05D001239 ORTHO05D000925 1.7e-09 66.2 46 69.6
BcaB02g10316 Brassica carinata HOM05D001239 ORTHO05D000925 2.8e-09 65.5 111 38.7
BolC6t35926H Brassica oleracea HOM05D001239 ORTHO05D000925 4.8e-09 64.7 100 40.0
BolC9t59423H Brassica oleracea HOM05D001239 ORTHO05D000925 4.8e-09 64.7 102 40.2
Thhalv10019721m.g Eutrema salsugineum HOM05D001239 ORTHO05D000925 4.8e-09 64.7 110 37.3
BolC6t35269H Brassica oleracea HOM05D001239 ORTHO05D000925 8.2e-09 63.9 109 36.7
Thhalv10002326m.g Eutrema salsugineum HOM05D001239 ORTHO05D000925 8.2e-09 63.9 109 36.7
BolC4t25971H Brassica oleracea HOM05D001239 ORTHO05D000925 1.1e-08 63.5 109 39.4
BraA06t27060Z Brassica rapa HOM05D001239 ORTHO05D000925 1.8e-08 62.8 60 58.3
AL2G28950 Arabidopsis lyrata HOM05D012944 ORTHO05D014028 2.4e-08 62.4 97 39.2
BraA09t38022Z Brassica rapa HOM05D001239 ORTHO05D000925 2.4e-08 62.4 109 39.4
BolC6t35664H Brassica oleracea HOM05D008653 ORTHO05D000925 3.1e-08 62.0 94 43.6
BolC7t44271H Brassica oleracea HOM05D001239 ORTHO05D000925 3.1e-08 62.0 118 35.6
A07p43230 Brassica napus HOM05D008478 ORTHO05D013784 4.1e-08 61.6 87 44.8
BraA04t17855Z Brassica rapa HOM05D008478 ORTHO05D013784 4.1e-08 61.6 87 44.8
Thhalv10011015m.g Eutrema salsugineum HOM05D001239 ORTHO05D000925 4.1e-08 61.6 109 36.7
BcaB06g27275 Brassica carinata HOM05D001239 ORTHO05D000925 5.3e-08 61.2 109 35.8
BolC6t35759H Brassica oleracea HOM05D010756 ORTHO05D000925 5.3e-08 61.2 109 33.9
BolC6t38835H Brassica oleracea HOM05D001239 ORTHO05D000925 5.3e-08 61.2 83 45.8
BraA04t17503Z Brassica rapa HOM05D001239 ORTHO05D000925 5.3e-08 61.2 109 32.1
BraA10t43824Z Brassica rapa HOM05D001239 ORTHO05D000925 5.3e-08 61.2 109 33.9
BcaC02g10519 Brassica carinata HOM05D001239 ORTHO05D000925 6.9e-08 60.8 112 33.9
BcaC04g22623 Brassica carinata HOM05D001239 ORTHO05D000925 6.9e-08 60.8 109 35.8
BraA10t45304Z Brassica rapa HOM05D008478 ORTHO05D000925 6.9e-08 60.8 41 68.3
AL8G38210 Arabidopsis lyrata HOM05D012944 ORTHO05D014028 9.1e-08 60.5 59 49.2
BraA06t26208Z Brassica rapa HOM05D008478 ORTHO05D000925 9.1e-08 60.5 39 71.8
BcaB01g03722 Brassica carinata HOM05D001239 ORTHO05D000925 1.2e-07 60.1 112 35.7
BcaC01g00419 Brassica carinata HOM05D008478 ORTHO05D013784 1.2e-07 60.1 87 46.0
C01p44960 Brassica napus HOM05D008478 ORTHO05D000925 1.2e-07 60.1 77 50.6
BraA08t34484Z Brassica rapa HOM05D008653 ORTHO05D000925 1.2e-07 60.1 85 43.5
Sp1g01750 Schrenkiella parvula HOM05D001239 ORTHO05D000925 1.2e-07 60.1 107 40.2
BcaC05g25993 Brassica carinata HOM05D000003 ORTHO05D000006 1.5e-07 59.7 101 40.6
BolC9t54410H Brassica oleracea HOM05D001239 ORTHO05D000925 1.5e-07 59.7 83 45.8
BcaB06g27392 Brassica carinata HOM05D008478 ORTHO05D000740 2.0e-07 59.3 75 50.7
BcaC01g05560 Brassica carinata HOM05D001239 ORTHO05D000925 2.0e-07 59.3 110 37.3
BcaC04g22514 Brassica carinata HOM05D001239 ORTHO05D027739 2.0e-07 59.3 108 34.3
BNapus_Darmor_BZH_scaffold_229p00140 Brassica napus HOM05D001239 ORTHO05D000925 2.0e-07 59.3 95 38.9
BraA03t13628Z Brassica rapa HOM05D001239 ORTHO05D000925 2.0e-07 59.3 110 37.3
Thhalv10024129m.g Eutrema salsugineum HOM05D001239 ORTHO05D000925 2.0e-07 59.3 108 34.3
BNapus_Darmor_BZH_scaffold_118p00230 Brassica napus HOM05D008478 ORTHO05D013784 2.6e-07 58.9 87 43.7
BolC5t33152H Brassica oleracea HOM05D001239 ORTHO05D000925 2.6e-07 58.9 114 36.8
BcaC01g01483 Brassica carinata HOM05D001239 ORTHO05D000925 3.4e-07 58.5 109 33.0
BolC1t00761H Brassica oleracea HOM05D008653 ORTHO05D000925 3.4e-07 58.5 88 40.9
BcaB08g35967 Brassica carinata HOM05D001239 ORTHO05D000925 4.5e-07 58.2 109 37.6
BolC6t37992H Brassica oleracea HOM05D010756 ORTHO05D000925 4.5e-07 58.2 109 33.0
BraA01t03685Z Brassica rapa HOM05D001239 ORTHO05D000925 4.5e-07 58.2 109 34.9
BraA09t36306Z Brassica rapa HOM05D008478 ORTHO05D013784 4.5e-07 58.2 87 43.7
AT4G09490 Arabidopsis thaliana HOM05D001239 ORTHO05D000925 5.9e-07 57.8 113 33.6
C02p49620 Brassica napus HOM05D001239 ORTHO05D000925 5.9e-07 57.8 114 36.8
BraA04t18944Z Brassica rapa HOM05D008653 ORTHO05D000925 5.9e-07 57.8 96 38.5
BcaB07g32430 Brassica carinata HOM05D001239 ORTHO05D000925 7.7e-07 57.4 110 36.4
BcaC08g44695 Brassica carinata HOM05D008478 ORTHO05D013784 7.7e-07 57.4 76 46.1
BolC2t11040H Brassica oleracea HOM05D001239 ORTHO05D000925 7.7e-07 57.4 114 36.8
BolC6t36504H Brassica oleracea HOM05D001239 ORTHO05D000925 7.7e-07 57.4 92 38.0
BraA08t33512Z Brassica rapa HOM05D001239 ORTHO05D000925 7.7e-07 57.4 110 34.5
CARHR153540 Cardamine hirsuta HOM05D001239 ORTHO05D000925 7.7e-07 57.4 109 33.9
BcaC03g15774 Brassica carinata HOM05D001239 ORTHO05D000925 1.3e-06 56.6 110 36.4
C03p52090 Brassica napus HOM05D001239 ORTHO05D000925 1.3e-06 56.6 112 34.8
BolC3t17489H Brassica oleracea HOM05D001239 ORTHO05D000925 1.3e-06 56.6 112 34.8
BolC7t42027H Brassica oleracea HOM05D001239 ORTHO05D000925 1.3e-06 56.6 109 33.9
BolC8t49091H Brassica oleracea HOM05D001239 ORTHO05D000925 1.3e-06 56.6 109 33.9
BraA03t12511Z Brassica rapa HOM05D001239 ORTHO05D000925 1.3e-06 56.6 109 36.7
Thhalv10028180m.g Eutrema salsugineum HOM05D001239 ORTHO05D000925 1.3e-06 56.6 105 34.3
BcaC06g34537 Brassica carinata HOM05D001239 ORTHO05D000925 1.7e-06 56.2 116 37.9
A03p05330 Brassica napus HOM05D008478 ORTHO05D013784 1.7e-06 56.2 87 42.5
BolC4t26780H Brassica oleracea HOM05D001239 ORTHO05D000925 1.7e-06 56.2 118 37.3
Lj4g0011977 Lotus japonicus HOM05D000003 ORTHO05D000167 1.7e-06 56.2 111 34.2
BcaNung02294 Brassica carinata HOM05D001239 ORTHO05D000925 2.2e-06 55.8 109 36.7
BolC1t02319H Brassica oleracea HOM05D000003 ORTHO05D000004 2.2e-06 55.8 109 32.1
BolC4t26714H Brassica oleracea HOM05D001239 ORTHO05D000925 2.2e-06 55.8 111 35.1
BraA02t06515Z Brassica rapa HOM05D001239 ORTHO05D000925 2.2e-06 55.8 104 33.7
BraA02t08675Z Brassica rapa HOM05D001239 ORTHO05D000925 2.2e-06 55.8 109 31.2
CARHR017910 Cardamine hirsuta HOM05D001239 ORTHO05D000925 2.2e-06 55.8 109 34.9
AL9U10020 Arabidopsis lyrata HOM05D001239 ORTHO05D000925 2.9e-06 55.5 111 33.3
C01p27290 Brassica napus HOM05D001239 ORTHO05D000925 2.9e-06 55.5 110 36.4
C02p54670 Brassica napus HOM05D001239 ORTHO05D000925 2.9e-06 55.5 116 38.8
C06p10370 Brassica napus HOM05D001239 ORTHO05D000925 2.9e-06 55.5 110 36.4
BolC5t29933H Brassica oleracea HOM05D001239 ORTHO05D000925 2.9e-06 55.5 101 35.6
BcaC08g44422 Brassica carinata HOM05D001239 ORTHO05D017499 3.8e-06 55.1 91 40.7
BcaC08g45635 Brassica carinata HOM05D008478 ORTHO05D013784 3.8e-06 55.1 87 44.8
C06p08080 Brassica napus HOM05D001239 ORTHO05D000925 3.8e-06 55.1 115 31.3
BolC9t58889H Brassica oleracea HOM05D001239 ORTHO05D000925 3.8e-06 55.1 84 40.5
BraA08t33225Z Brassica rapa HOM05D001239 ORTHO05D000925 3.8e-06 55.1 106 33.0
BcaNung04285 Brassica carinata HOM05D001239 ORTHO05D000925 5.0e-06 54.7 109 35.8
BraA09t38272Z Brassica rapa HOM05D010756 ORTHO05D000925 5.0e-06 54.7 95 31.6
BcaC05g28546 Brassica carinata HOM05D000003 ORTHO05D000006 6.5e-06 54.3 109 33.9
BolC2t10715H Brassica oleracea HOM05D001239 ORTHO05D000925 6.5e-06 54.3 113 36.3
BolC5t31042H Brassica oleracea HOM05D001239 ORTHO05D000925 6.5e-06 54.3 93 38.7
BolC6t38349H Brassica oleracea HOM05D000152 ORTHO05D000609 6.5e-06 54.3 93 38.7
BraA08t32647Z Brassica rapa HOM05D001239 ORTHO05D000925 6.5e-06 54.3 114 32.5
AL8G23160 Arabidopsis lyrata HOM05D001239 ORTHO05D000925 8.5e-06 53.9 108 35.2
BcaB01g00882 Brassica carinata HOM05D000003 ORTHO05D000925 8.5e-06 53.9 87 39.1
A04p30600 Brassica napus HOM05D001239 ORTHO05D000925 8.5e-06 53.9 109 34.9
C03p84910 Brassica napus HOM05D008478 ORTHO05D013784 8.5e-06 53.9 85 38.8
BolC2t07957H Brassica oleracea HOM05D001239 ORTHO05D000925 8.5e-06 53.9 57 47.4
BolC2t09268H Brassica oleracea HOM05D001239 ORTHO05D000925 8.5e-06 53.9 114 40.4
BolC3t20783H Brassica oleracea HOM05D008478 ORTHO05D013784 8.5e-06 53.9 85 38.8
BraA02t06559Z Brassica rapa HOM05D001239 ORTHO05D000925 8.5e-06 53.9 84 40.5
BraA08t35548Z Brassica rapa HOM05D001239 ORTHO05D000925 8.5e-06 53.9 82 42.7
Lj6g0004382 Lotus japonicus HOM05D000003 ORTHO05D000004 8.5e-06 53.9 110 31.8


User provided reference genes

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