Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 0.0e+00 1320.4 650 100.0
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 0.0e+00 1230.7 650 93.5
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 0.0e+00 1226.1 651 93.4
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 0.0e+00 1221.5 652 93.3
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 0.0e+00 1215.3 662 91.7
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 0.0e+00 1204.5 663 91.3
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 0.0e+00 1199.5 650 91.5
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 0.0e+00 1176.0 650 89.8
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 0.0e+00 1170.2 654 89.1
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 0.0e+00 1169.5 650 89.2
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 0.0e+00 1156.4 650 88.0
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 0.0e+00 1151.7 650 88.2
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 0.0e+00 1136.3 650 86.0
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 1.7e-298 1028.9 648 77.5
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 1.8e-255 885.9 646 69.2
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 2.4e-255 885.6 649 67.8
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 5.3e-255 884.4 649 68.3
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 9.0e-255 883.6 647 67.2
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 2.6e-254 882.1 650 67.1
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 3.8e-253 878.2 645 65.7
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 1.4e-252 876.3 649 66.4
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 4.2e-252 874.8 651 67.4
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 1.1e-249 866.7 674 65.7
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 1.1e-249 866.7 646 65.2
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.9e-249 865.9 649 66.3
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 4.3e-249 864.8 651 65.9
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 5.3e-247 857.8 643 64.4
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 5.8e-246 854.4 654 65.7
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 5.8e-246 854.4 653 65.4
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 8.7e-242 840.5 646 64.4
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 8.2e-240 833.9 652 64.3
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 3.1e-239 832.0 649 63.0
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 3.4e-238 828.6 652 63.2
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 7.6e-238 827.4 652 64.0
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.1e-236 823.5 651 64.2
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 2.1e-235 819.3 650 62.3
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 5.7e-233 811.2 650 61.4
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 2.8e-232 808.9 655 62.4
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 1.4e-231 806.6 654 61.2
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 5.3e-231 804.7 612 63.9
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 5.3e-231 804.7 642 62.8
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 6.9e-231 804.3 652 61.3
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 7.7e-230 800.8 652 60.6
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 1.7e-229 799.7 652 60.6
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 1.7e-229 799.7 652 60.9
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 1.7e-229 799.7 650 62.0
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 3.2e-228 795.4 641 63.5
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 3.2e-228 795.4 651 61.9
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 4.2e-228 795.0 642 60.7
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 9.4e-228 793.9 653 60.2
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 9.4e-228 793.9 653 60.2
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 2.1e-227 792.7 655 62.0
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 7.9e-227 790.8 646 61.6
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 1.8e-226 789.6 652 61.0
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 1.8e-226 789.6 659 59.5
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 5.1e-226 788.1 648 61.1
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 5.7e-225 784.6 629 63.4
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 9.7e-225 783.9 653 61.6
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.7e-224 783.1 653 60.2
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 4.8e-224 781.6 654 60.6
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 8.2e-224 780.8 616 63.0
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 1.1e-223 780.4 646 61.5
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 1.5e-222 776.5 650 60.5
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 3.4e-222 775.4 648 60.3
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 7.7e-222 774.2 649 60.7
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 7.7e-222 774.2 657 59.4
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 7.7e-222 774.2 649 60.6
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 2.9e-221 772.3 654 59.9
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 8.5e-221 770.8 647 59.4
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 1.2e-219 766.9 540 70.0
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 2.7e-219 765.8 658 60.0
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 3.9e-218 761.9 647 60.3
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 2.6e-217 759.2 660 58.9
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 2.6e-217 759.2 610 62.5
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 3.3e-217 758.8 649 59.3
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 5.7e-217 758.1 646 59.0
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 8.2e-216 754.2 648 59.6
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 7.0e-215 751.1 655 57.7
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 2.6e-214 749.2 656 58.1
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 3.1e-207 725.7 677 56.4
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 2.7e-203 712.6 646 55.9
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 8.8e-202 707.6 650 54.2
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 8.3e-200 701.0 649 55.9
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 1.8e-199 699.9 646 55.4
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 5.5e-196 688.3 643 55.1
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 3.1e-186 656.0 574 57.3
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 2.6e-177 626.3 598 52.0
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 1.9e-175 620.2 677 50.4
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 1.3e-173 614.0 509 60.9
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 6.0e-166 588.6 496 60.1
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 2.5e-164 583.2 626 52.1
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 8.9e-162 574.7 581 53.5
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 2.9e-152 543.1 659 47.0
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 1.4e-151 540.8 650 45.2
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 8.7e-141 505.0 642 45.8
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 2.8e-139 500.0 660 44.2
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 1.1e-138 498.0 594 46.8
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 1.1e-138 498.0 473 53.5
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 2.8e-123 446.8 254 82.7
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 9.0e-122 441.8 544 47.1
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 8.5e-112 408.7 377 54.4
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 8.5e-104 382.1 637 37.8
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 2.2e-96 357.5 358 52.0
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 2.0e-92 344.4 482 41.1
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 4.4e-92 343.2 345 51.6
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 7.5e-92 342.4 178 87.6
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 9.1e-90 335.5 296 58.1
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 2.7e-81 307.4 426 42.0
HPP92_021417 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.8e-77 294.7 197 72.6
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 3.3e-63 247.3 278 47.1
Cpa.g.sc4.27 Carica papaya HOM05D006000 ORTHO05D008793 3.6e-54 217.2 198 60.1
SalBow8G5300 Salvia bowleyana HOM05D006000 ORTHO05D007749 7.6e-52 209.5 103 93.2
Cpa.g.sc4.41 Carica papaya HOM05D006000 ORTHO05D007749 8.4e-51 206.1 106 87.7
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 1.1e-50 205.7 215 48.8
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 1.7e-35 155.2 507 29.0
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 3.8e-35 154.1 200 41.0
FvH4_5g06930 Fragaria vesca HOM05D006000 ORTHO05D007749 2.4e-34 151.4 137 58.4
BcaB01g00966 Brassica carinata HOM05D006000 ORTHO05D007749 3.2e-34 151.0 149 61.1
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.2e-33 149.1 178 46.6
CAN.G546.38 Capsicum annuum HOM05D006000 ORTHO05D007749 3.2e-26 124.4 85 70.6
SGA_v2.0_scaffold115G32113 Striga asiatica HOM05D005956 ORTHO05D007197 7.1e-26 123.2 58 91.4
SMO328G0007 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 7.9e-25 119.8 83 67.5
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 1.3e-24 119.0 76 76.3
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 3.3e-23 114.4 154 44.2
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 2.6e-20 104.8 95 53.7
Lsat_1_v5_gn_4_166800 Lactuca sativa HOM05D006000 ORTHO05D018009 2.3e-16 91.7 76 60.5
Lsat_1_v5_gn_3_61521 Lactuca sativa HOM05D006000 ORTHO05D018009 3.9e-16 90.9 74 62.2
Lsat_1_v5_gn_4_154121 Lactuca sativa HOM05D006000 ORTHO05D018009 5.1e-16 90.5 74 60.8
arahy.Tifrunner.gnm1.ann1.0Z5YS0 Arachis hypogaea HOM05D001248 ORTHO05D007749 8.7e-16 89.7 44 86.4
Lsat_1_v5_gn_2_53660 Lactuca sativa HOM05D003480 ORTHO05D018009 1.9e-15 88.6 74 60.8
Lsat_1_v5_gn_4_114361 Lactuca sativa HOM05D003480 ORTHO05D018009 2.5e-15 88.2 74 59.5
Lsat_1_v5_gn_6_19961 Lactuca sativa HOM05D003480 ORTHO05D018009 1.6e-14 85.5 74 59.5
CAN.G1014.24 Capsicum annuum HOM05D000846 ORTHO05D028464 7.2e-10 70.1 93 45.2
CAN.G755.4 Capsicum annuum HOM05D006000 ORTHO05D028464 1.6e-09 68.9 93 44.1
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 7.9e-09 66.6 91 46.2
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 2.3e-08 65.1 96 45.8


User provided reference genes

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