Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00799 Brassica carinata HOM05D005335 ORTHO05D006472 2.9e-77 292.0 162 100.0
BcaC07g39341 Brassica carinata HOM05D005335 ORTHO05D006472 1.3e-69 266.5 163 93.9
C08p23580 Brassica napus HOM05D005335 ORTHO05D006472 1.3e-69 266.5 163 93.9
BolC8t49988H Brassica oleracea HOM05D005335 ORTHO05D006472 1.3e-69 266.5 163 93.9
A06p19120 Brassica napus HOM05D005335 ORTHO05D006472 3.8e-69 265.0 163 92.6
BraA06t24996Z Brassica rapa HOM05D005335 ORTHO05D006472 3.8e-69 265.0 163 92.6
BcaB05g23008 Brassica carinata HOM05D005335 ORTHO05D006472 4.8e-64 248.1 163 84.0
A01p25690 Brassica napus HOM05D005335 ORTHO05D006472 1.1e-63 246.9 165 84.2
BraA01t02445Z Brassica rapa HOM05D005335 ORTHO05D006472 1.1e-63 246.9 165 84.2
BolC1t03128H Brassica oleracea HOM05D005335 ORTHO05D006472 3.4e-62 241.9 165 82.4
AL5G28000 Arabidopsis lyrata HOM05D005335 ORTHO05D006472 2.5e-57 225.7 166 84.9
Thhalv10010777m.g Eutrema salsugineum HOM05D005335 ORTHO05D006472 5.7e-57 224.6 151 87.4
AT3G48550 Arabidopsis thaliana HOM05D005335 ORTHO05D006472 8.2e-56 220.7 167 84.4
Carub.0005s1474 Capsella rubella HOM05D005335 ORTHO05D006472 7.6e-54 214.2 173 80.3
Sp5g13430 Schrenkiella parvula HOM05D005335 ORTHO05D006472 7.9e-51 204.1 119 92.4
BcaC09g49876 Brassica carinata HOM05D005335 ORTHO05D006472 6.3e-40 167.9 165 63.0
CARHR157350 Cardamine hirsuta HOM05D005335 ORTHO05D006472 1.5e-38 163.3 115 80.9
C01p32260 Brassica napus HOM05D005335 ORTHO05D006472 1.0e-34 150.6 109 78.9
Aa31LG4G17170 Aethionema arabicum HOM05D005335 ORTHO05D006472 1.4e-34 150.2 92 90.2
Duzib084G1383 Durio zibethinus HOM05D005335 ORTHO05D006472 9.1e-31 137.5 173 53.2
CSS0021703 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 1.0e-29 134.0 159 55.3
Gorai.006G272000 Gossypium raimondii HOM05D005335 ORTHO05D006472 3.8e-29 132.1 163 51.5
Gohir.D09G247500 Gossypium hirsutum HOM05D005335 ORTHO05D006472 5.0e-29 131.7 163 51.5
Nn3g16458 Nelumbo nucifera HOM05D005335 ORTHO05D006472 3.2e-28 129.0 172 50.6
Actinidia36728 Actinidia chinensis HOM05D005335 ORTHO05D006472 4.2e-28 128.6 113 62.8
Ah.04g153430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 5.5e-28 128.3 177 52.5
EL10Ac5g11411 Beta vulgaris HOM05D005335 ORTHO05D006472 1.6e-27 126.7 113 66.4
Gohir.D08G258700 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.6e-27 126.7 163 49.1
Gohir.D05G361600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 4.7e-27 125.2 122 59.0
Gorai.009G431200 Gossypium raimondii HOM05D005335 ORTHO05D006472 6.1e-27 124.8 122 59.0
DCAR_007490 Daucus carota HOM05D005335 ORTHO05D006472 1.8e-26 123.2 154 51.3
Ah.11g045430 Amaranthus hybridus HOM05D005335 ORTHO05D006472 2.3e-26 122.9 113 62.8
Gorai.004G276200 Gossypium raimondii HOM05D005335 ORTHO05D006472 4.0e-26 122.1 157 51.0
AUR62034828 Chenopodium quinoa HOM05D005335 ORTHO05D006472 1.1e-25 120.6 111 64.0
AUR62029609 Chenopodium quinoa HOM05D005335 ORTHO05D006472 2.6e-25 119.4 109 65.1
Gohir.A09G247000 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.1e-23 114.0 163 47.9
Lalb_Chr13g0297231 Lupinus albus HOM05D005335 ORTHO05D006472 1.1e-23 114.0 159 47.8
Rhsim12G0175000 Rhododendron simsii HOM05D005335 ORTHO05D006472 2.4e-23 112.8 159 49.1
Actinidia08873 Actinidia chinensis HOM05D001420 ORTHO05D002488 4.1e-23 112.1 152 51.3
Gohir.A04G026600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 5.3e-23 111.7 122 54.1
Sc04g0000630 Simmondsia chinensis HOM05D005335 ORTHO05D006472 5.3e-23 111.7 122 54.1
Rhsim08G0190300 Rhododendron simsii HOM05D005335 ORTHO05D006472 7.0e-23 111.3 163 46.0
PGR044G0086 Punica granatum HOM05D005335 ORTHO05D006472 4.5e-22 108.6 168 45.2
THA.LOC104821517 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 7.7e-22 107.8 163 49.1
TAR371G0199 Trochodendron aralioides HOM05D005335 ORTHO05D006472 1.0e-21 107.5 170 46.5
FAN13G0785 Fragaria x ananassa HOM05D005335 ORTHO05D006472 6.5e-21 104.8 175 43.4
QL10p002879 Quercus lobata HOM05D005335 ORTHO05D006472 1.1e-20 104.0 177 45.2
vmacro19206 Vaccinium macrocarpon HOM05D005335 ORTHO05D006472 3.2e-20 102.4 164 43.9
SGA_v2.0_scaffold161G37793 Striga asiatica HOM05D005335 ORTHO05D006472 4.2e-20 102.1 113 54.9
Dinv11173 Davidia involucrata HOM05D001420 ORTHO05D002488 1.2e-19 100.5 167 44.9
CSS0038536 Camellia sinensis var. sinensis HOM05D005335 ORTHO05D006472 1.6e-19 100.1 186 43.5
HPP92_009722 Vanilla planifolia HOM05D005335 ORTHO05D006472 1.6e-19 100.1 114 50.9
MSTRG.11283 Avicennia marina HOM05D005335 ORTHO05D006472 4.7e-19 98.6 170 44.7
DCAR_016388 Daucus carota HOM05D005335 ORTHO05D006472 6.1e-19 98.2 168 43.5
Duzib205G0334 Durio zibethinus HOM05D005335 ORTHO05D006472 6.1e-19 98.2 172 44.2
Lj4g0005056 Lotus japonicus HOM05D005335 ORTHO05D006472 8.0e-19 97.8 152 45.4
Cpa.g.sc13.114 Carica papaya HOM05D005335 ORTHO05D006472 1.0e-18 97.4 174 45.4
Atru.chr6.1795 Acer truncatum HOM05D005335 ORTHO05D006472 1.4e-18 97.1 161 50.3
Hma1.2p1_0014F.1_g009400 Hydrangea macrophylla HOM05D005335 ORTHO05D006472 3.0e-18 95.9 171 43.9
PSO017G0745 Papaver somniferum HOM05D005335 ORTHO05D006472 3.0e-18 95.9 182 41.8
THA.LOC104818185 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 5.2e-18 95.1 152 45.4
Oeu023482.1 Olea europaea HOM05D005335 ORTHO05D006472 8.8e-18 94.4 168 42.3
THA.LOC104798946 Tarenaya hassleriana HOM05D005335 ORTHO05D006472 2.0e-17 93.2 155 47.1
CiPaw.12G043300 Carya illinoinensis HOM05D005335 ORTHO05D006472 3.4e-17 92.4 131 48.9
Sabra12G0071600 Salix brachista HOM05D005335 ORTHO05D006472 3.4e-17 92.4 124 50.0
Gohir.D07G055600 Gossypium hirsutum HOM05D005335 ORTHO05D006472 1.7e-16 90.1 163 42.9
Gorai.001G058900 Gossypium raimondii HOM05D005335 ORTHO05D006472 1.7e-16 90.1 163 42.9
Gohir.A07G051200 Gossypium hirsutum HOM05D005335 ORTHO05D006472 2.2e-16 89.7 163 42.3
Sed0021893 Sechium edule HOM05D005335 ORTHO05D006472 2.2e-16 89.7 162 40.7
Lalb_Chr07g0183461 Lupinus albus HOM05D005335 ORTHO05D006472 2.8e-16 89.4 158 43.0
Actinidia25571 Actinidia chinensis HOM05D005335 ORTHO05D006472 6.3e-16 88.2 115 54.8
MD06G1141500 Malus domestica HOM05D005335 ORTHO05D006472 1.1e-15 87.4 173 39.3
Potri.012G097901 Populus trichocarpa HOM05D005335 ORTHO05D006472 1.1e-15 87.4 178 40.4
Thecc.03G129400 Theobroma cacao HOM05D005335 ORTHO05D006472 1.4e-15 87.0 174 42.5
Manes.06G119800 Manihot esculenta HOM05D005335 ORTHO05D006472 2.4e-15 86.3 175 41.1
COL.COLO4_28131 Corchorus olitorius HOM05D005335 ORTHO05D006472 3.1e-15 85.9 175 46.3
FAN04G0838 Fragaria x ananassa HOM05D005335 ORTHO05D006472 5.4e-15 85.1 176 39.2
Ciclev10032959m.g Citrus clementina HOM05D005335 ORTHO05D006472 9.1e-15 84.3 167 41.3
Peaxi162Scf00009g00007 Petunia axillaris HOM05D005335 ORTHO05D006472 1.6e-14 83.6 121 49.6
Haze_07140 Corylus avellana HOM05D005335 ORTHO05D006472 2.0e-14 83.2 170 41.8
VMungo1215G0398 Vigna mungo HOM05D005335 ORTHO05D006472 2.0e-14 83.2 152 42.8
Cc04_g09930 Coffea canephora HOM05D005335 ORTHO05D006472 2.7e-14 82.8 178 38.8
Sabra15G0117300 Salix brachista HOM05D005335 ORTHO05D006472 4.5e-14 82.0 169 46.2
Glyma.17G130400 Glycine max HOM05D005335 ORTHO05D006472 5.9e-14 81.6 156 48.1
HanXRQChr09g0273241 Helianthus annuus HOM05D005335 ORTHO05D006472 5.9e-14 81.6 162 37.0
Nitab4.5_0002403g0010 Nicotiana tabacum HOM05D005335 ORTHO05D006472 5.9e-14 81.6 129 45.7
Psat4g066680 Pisum sativum HOM05D005335 ORTHO05D006472 7.7e-14 81.3 152 41.4
Medtr4g103250 Medicago truncatula HOM05D005335 ORTHO05D006472 1.0e-13 80.9 152 41.4
Oeu045458.1 Olea europaea HOM05D005335 ORTHO05D006472 1.0e-13 80.9 168 37.5
Oeu045459.1 Olea europaea HOM05D005335 ORTHO05D006472 1.0e-13 80.9 168 37.5
Solyc03g112920.1 Solanum lycopersicum HOM05D005335 ORTHO05D006472 1.3e-13 80.5 175 38.3
Ca_26102_v3 Cicer arietinum L. HOM05D005335 ORTHO05D006472 1.7e-13 80.1 156 40.4
Migut.I00507 Erythranthe guttata HOM05D005335 ORTHO05D006472 1.7e-13 80.1 177 37.9
FAN08G1274 Fragaria x ananassa HOM05D005335 ORTHO05D006472 1.7e-13 80.1 176 38.1
PSO478G4723 Papaver somniferum HOM05D005335 ORTHO05D006472 1.7e-13 80.1 199 38.2
RcHm_v2.0_Chr7g0190101 Rosa chinensis HOM05D005335 ORTHO05D006472 1.7e-13 80.1 176 39.8
MBI11_g05328_MAGBIO Magnolia biondii HOM05D001420 ORTHO05D002488 2.9e-13 79.3 114 47.4
Nitab4.5_0000514g0170 Nicotiana tabacum HOM05D005335 ORTHO05D006472 2.9e-13 79.3 125 45.6
FvH4_5g08350 Fragaria vesca HOM05D005335 ORTHO05D006472 3.8e-13 79.0 170 38.8
PGSC0003DMG400018091 Solanum tuberosum HOM05D005335 ORTHO05D006472 3.8e-13 79.0 88 54.5
MELO3C026206.2 Cucumis melo HOM05D005335 ORTHO05D006472 5.0e-13 78.6 169 37.9
Lsat_1_v5_gn_4_80981 Lactuca sativa HOM05D005335 ORTHO05D006472 6.5e-13 78.2 174 36.8
TWI39G0987 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 6.5e-13 78.2 171 40.4
Cfa018794 Carpinus fangiana HOM05D005335 ORTHO05D006472 8.5e-13 77.8 173 40.5
ClCG06G017900 Citrullus lanatus HOM05D005335 ORTHO05D006472 8.5e-13 77.8 169 37.9
FAN18G1337 Fragaria x ananassa HOM05D005335 ORTHO05D006472 8.5e-13 77.8 170 38.8
Sopen03g032000 Solanum pennellii HOM05D005335 ORTHO05D006472 1.1e-12 77.4 175 37.7
CiPaw.11G007000 Carya illinoinensis HOM05D005335 ORTHO05D006472 1.5e-12 77.0 174 38.5
PSO478G2775 Papaver somniferum HOM05D005335 ORTHO05D006472 1.9e-12 76.6 182 37.4
CAN.G1305.23 Capsicum annuum HOM05D005335 ORTHO05D006472 2.5e-12 76.3 179 36.3
Glyma.05G048500 Glycine max HOM05D005335 ORTHO05D006472 3.2e-12 75.9 153 47.7
Potri.015G096500 Populus trichocarpa HOM05D005335 ORTHO05D006472 3.2e-12 75.9 170 44.1
TPR.G19227 Trifolium pratense HOM05D005335 ORTHO05D006472 3.2e-12 75.9 152 38.8
Manes.14G051200 Manihot esculenta HOM05D005335 ORTHO05D006472 4.2e-12 75.5 98 51.0
Prupe.5G150800 Prunus persica HOM05D005335 ORTHO05D006472 4.2e-12 75.5 129 42.6
TAR629G1091 Trochodendron aralioides HOM05D005335 ORTHO05D006472 7.2e-12 74.7 173 38.2
Dinv23148 Davidia involucrata HOM05D005335 ORTHO05D006472 9.5e-12 74.3 109 48.6
CANSAT80G0357 Cannabis sativa HOM05D005335 ORTHO05D006472 3.6e-11 72.4 124 41.1
Aqoxy3G00598 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 4.7e-11 72.0 162 37.0
Aqoxy5G03368 Aquilegia oxysepala HOM05D005335 ORTHO05D006472 4.7e-11 72.0 169 36.7
Migut.D01260 Erythranthe guttata HOM05D005335 ORTHO05D006472 6.1e-11 71.6 84 50.0
Oeu005014.1 Olea europaea HOM05D005335 ORTHO05D006472 6.1e-11 71.6 164 37.8
GSVIVG01008545001 Vitis vinifera HOM05D005335 ORTHO05D006472 6.1e-11 71.6 87 51.7
Oeu007933.1 Olea europaea HOM05D000179 ORTHO05D000107 1.0e-10 70.9 90 45.6
CsaV3_1G000550 Cucumis sativus L. HOM05D005335 ORTHO05D006472 2.3e-10 69.7 169 36.1
PSO017G4217 Papaver somniferum HOM05D005335 ORTHO05D006472 2.3e-10 69.7 199 36.2
SGA_v2.0_scaffold5G02870 Striga asiatica HOM05D005335 ORTHO05D006472 3.0e-10 69.3 121 38.8
HanXRQChr16g0498141 Helianthus annuus HOM05D005335 ORTHO05D006472 4.0e-10 68.9 172 34.9
DCAR_030310 Daucus carota HOM05D000179 ORTHO05D000107 6.8e-10 68.2 110 40.0
MD14G1156700 Malus domestica HOM05D005335 ORTHO05D006472 1.2e-09 67.4 173 37.6
Nn4g22311 Nelumbo nucifera HOM05D005335 ORTHO05D006472 1.5e-09 67.0 171 38.6
Sed0012251 Sechium edule HOM05D005335 ORTHO05D006472 1.5e-09 67.0 162 38.3
MSTRG.9361 Avicennia marina HOM05D000179 ORTHO05D000107 3.4e-09 65.9 92 41.3
EL10Ac8g19493 Beta vulgaris HOM05D000179 ORTHO05D000107 4.4e-09 65.5 81 45.7
Oeu030248.1 Olea europaea HOM05D005335 ORTHO05D006472 4.4e-09 65.5 159 35.2
Oeu047494.1 Olea europaea HOM05D005335 ORTHO05D006472 5.7e-09 65.1 73 46.6
CAN.G65.84 Capsicum annuum HOM05D000179 ORTHO05D000107 2.2e-08 63.2 117 37.6
Duzib068G0009 Durio zibethinus HOM05D000179 ORTHO05D000107 2.2e-08 63.2 131 32.1
Peaxi162Scf00033g02311 Petunia axillaris HOM05D000179 ORTHO05D000107 2.2e-08 63.2 76 44.7
TWI23G0456 Tripterygium wilfordii HOM05D005335 ORTHO05D006472 4.9e-08 62.0 170 35.3
HPP92_019339 Vanilla planifolia HOM05D000179 ORTHO05D000107 4.9e-08 62.0 151 34.4
Lsat_1_v5_gn_1_28901 Lactuca sativa HOM05D005335 ORTHO05D006472 1.1e-07 60.8 122 36.9
PGSC0003DMG400026959 Solanum tuberosum HOM05D000179 ORTHO05D000107 1.1e-07 60.8 76 44.7
Lalb_Chr14g0370451 Lupinus albus HOM05D000179 ORTHO05D028851 9.2e-07 57.8 79 39.2
Nitab4.5_0002202g0020 Nicotiana tabacum HOM05D000179 ORTHO05D000107 1.2e-06 57.4 119 33.6
Oeu045270.1 Olea europaea HOM05D005335 ORTHO05D006472 1.2e-06 57.4 52 59.6
DCAR_002642 Daucus carota HOM05D000179 ORTHO05D000107 1.6e-06 57.0 115 35.7
Nitab4.5_0000521g0010 Nicotiana tabacum HOM05D000179 ORTHO05D000107 1.6e-06 57.0 122 33.6
Zm00001eb085520 Zea mays HOM05D005335 ORTHO05D006472 1.6e-06 57.0 94 40.4
Os04g0386300 Oryza sativa ssp. japonica HOM05D005335 ORTHO05D006472 3.5e-06 55.8 94 37.2
unitig_744.g24466 Utricularia gibba HOM05D005335 ORTHO05D006472 3.5e-06 55.8 153 35.9
FAN17G2176 Fragaria x ananassa HOM05D000179 ORTHO05D000107 5.9e-06 55.1 158 31.6
ClCG01G006810 Citrullus lanatus HOM05D000179 ORTHO05D000107 7.7e-06 54.7 114 35.1


User provided reference genes

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