Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00787 Brassica carinata HOM05D000023 ORTHO05D000014 2.6e-32 141.4 67 100.0
C04p23460 Brassica napus HOM05D000023 ORTHO05D000014 2.1e-26 121.7 61 88.5
BolC4t23848H Brassica oleracea HOM05D000023 ORTHO05D000014 2.1e-26 121.7 61 88.5
BolC6t36018H Brassica oleracea HOM05D000023 ORTHO05D000014 2.1e-26 121.7 61 88.5
BcaB01g01384 Brassica carinata HOM05D000023 ORTHO05D000014 3.2e-22 107.8 58 81.0
Thhalv10029312m.g Eutrema salsugineum HOM05D000023 ORTHO05D000014 4.8e-18 94.0 64 70.3
AUR62032028 Chenopodium quinoa HOM05D000023 ORTHO05D000014 9.9e-16 86.3 58 65.5
ECA233G1350 Erigeron canadensis HOM05D000023 ORTHO05D000001 3.8e-15 84.3 61 65.6
HanXRQChr06g0171651 Helianthus annuus HOM05D000023 ORTHO05D000014 4.9e-15 84.0 64 65.6
ECA233G1845 Erigeron canadensis HOM05D000023 ORTHO05D000014 1.9e-14 82.0 62 62.9
BcaC09g48560 Brassica carinata HOM05D000023 ORTHO05D000014 5.5e-14 80.5 68 58.8
ECA233G4059 Erigeron canadensis HOM05D000009 ORTHO05D000014 5.5e-14 80.5 64 62.5
Sp7g14400 Schrenkiella parvula HOM05D000023 ORTHO05D000014 5.5e-14 80.5 61 59.0
ECA233G4406 Erigeron canadensis HOM05D000131 ORTHO05D000014 7.1e-14 80.1 64 60.9
Glyma.03G100300 Glycine max HOM05D000023 ORTHO05D000014 9.3e-14 79.7 64 60.9
Atru.chr1.2498 Acer truncatum HOM05D000023 ORTHO05D000014 1.2e-13 79.3 59 61.0
arahy.Tifrunner.gnm1.ann1.B0DQ39 Arachis hypogaea HOM05D000023 ORTHO05D000014 3.5e-13 77.8 64 56.2
arahy.Tifrunner.gnm1.ann1.CHR5JU Arachis hypogaea HOM05D000023 ORTHO05D000014 3.5e-13 77.8 64 56.2
arahy.Tifrunner.gnm1.ann1.LZ7HA6 Arachis hypogaea HOM05D000023 ORTHO05D000014 3.5e-13 77.8 64 56.2
arahy.Tifrunner.gnm1.ann1.UX9V95 Arachis hypogaea HOM05D000023 ORTHO05D000014 3.5e-13 77.8 64 56.2
arahy.Tifrunner.gnm1.ann1.Y156SF Arachis hypogaea HOM05D000023 ORTHO05D000014 3.5e-13 77.8 64 56.2
TWI81G1053 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 3.5e-13 77.8 57 61.4
arahy.Tifrunner.gnm1.ann1.QCU1HD Arachis hypogaea HOM05D000023 ORTHO05D000014 6.0e-13 77.0 61 55.7
ClCG11G007040 Citrullus lanatus HOM05D000003 ORTHO05D000014 6.0e-13 77.0 56 57.1
arahy.Tifrunner.gnm1.ann1.BV9JUH Arachis hypogaea HOM05D000013 ORTHO05D000011 1.0e-12 76.3 64 54.7
Oeu061850.1 Olea europaea HOM05D000023 ORTHO05D000014 1.0e-12 76.3 64 56.2
AUR62006498 Chenopodium quinoa HOM05D000023 ORTHO05D000014 1.8e-12 75.5 55 63.6
Sp7g04680 Schrenkiella parvula HOM05D000023 ORTHO05D000014 1.8e-12 75.5 64 57.8
TWI77G0487 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 2.3e-12 75.1 61 55.7
FvH4_2g16371 Fragaria vesca HOM05D000023 ORTHO05D000014 3.9e-12 74.3 55 63.6
Lj5g0002668 Lotus japonicus HOM05D000023 ORTHO05D000014 3.9e-12 74.3 60 60.0
Atru.chr6.596 Acer truncatum HOM05D000023 ORTHO05D000014 5.1e-12 73.9 54 61.1
arahy.Tifrunner.gnm1.ann1.GA19A6 Arachis hypogaea HOM05D000023 ORTHO05D000014 5.1e-12 73.9 64 54.7
QL02p052017 Quercus lobata HOM05D000023 ORTHO05D000014 5.1e-12 73.9 59 59.3
QL02p079277 Quercus lobata HOM05D000023 ORTHO05D000014 5.1e-12 73.9 59 59.3
QL04p042141 Quercus lobata HOM05D000023 ORTHO05D000014 5.1e-12 73.9 59 59.3
QL05p053353 Quercus lobata HOM05D000023 ORTHO05D000014 5.1e-12 73.9 59 59.3
QL06p001114 Quercus lobata HOM05D000023 ORTHO05D000014 5.1e-12 73.9 59 59.3
QL06p025366 Quercus lobata HOM05D000023 ORTHO05D000014 5.1e-12 73.9 59 59.3
QL10p053741 Quercus lobata HOM05D000023 ORTHO05D000014 5.1e-12 73.9 59 59.3
QL11p043807 Quercus lobata HOM05D000023 ORTHO05D000014 5.1e-12 73.9 59 59.3
QL11p051169 Quercus lobata HOM05D000023 ORTHO05D000014 5.1e-12 73.9 59 59.3
Gorai.011G116500 Gossypium raimondii HOM05D000023 ORTHO05D000014 6.7e-12 73.6 54 61.1
RcHm_v2.0_Chr2g0102701 Rosa chinensis HOM05D000023 ORTHO05D000014 6.7e-12 73.6 57 56.1
TWI74G0763 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 6.7e-12 73.6 63 55.6
QL02p042311 Quercus lobata HOM05D000023 ORTHO05D000014 8.7e-12 73.2 59 59.3
arahy.Tifrunner.gnm1.ann1.9R3R3W Arachis hypogaea HOM05D000023 ORTHO05D000014 1.1e-11 72.8 64 53.1
arahy.Tifrunner.gnm1.ann1.KX0AYA Arachis hypogaea HOM05D000023 ORTHO05D000014 1.1e-11 72.8 64 53.1
CSS0004538 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 1.1e-11 72.8 54 61.1
CSS0014085 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 1.1e-11 72.8 54 61.1
CSS0022109 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 1.1e-11 72.8 54 61.1
CSS0034414 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 1.1e-11 72.8 54 61.1
CSS0004099 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 1.9e-11 72.0 54 61.1
CSS0027022 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 1.9e-11 72.0 54 61.1
CSS0040453 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 1.9e-11 72.0 54 61.1
CSS0042290 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 1.9e-11 72.0 54 61.1
QL10p029308 Quercus lobata HOM05D000023 ORTHO05D000014 1.9e-11 72.0 59 57.6
TPR.G6135 Trifolium pratense HOM05D000023 ORTHO05D000014 2.5e-11 71.6 63 52.4
CSS0021122 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 3.3e-11 71.2 54 59.3
QL07p028333 Quercus lobata HOM05D000023 ORTHO05D000014 3.3e-11 71.2 59 55.9
TPR.G40402 Trifolium pratense HOM05D000023 ORTHO05D000014 3.3e-11 71.2 60 53.3
QL02p073226 Quercus lobata HOM05D000023 ORTHO05D000014 4.3e-11 70.9 59 55.9
QL06p009534 Quercus lobata HOM05D000132 ORTHO05D000014 4.3e-11 70.9 60 55.0
QL10p011687 Quercus lobata HOM05D000023 ORTHO05D000014 4.3e-11 70.9 59 55.9
arahy.Tifrunner.gnm1.ann1.RRIW7B Arachis hypogaea HOM05D000023 ORTHO05D000014 5.6e-11 70.5 57 57.9
Oeu009409.1 Olea europaea HOM05D000023 ORTHO05D000014 5.6e-11 70.5 64 53.1
QL02p012945 Quercus lobata HOM05D000023 ORTHO05D000014 5.6e-11 70.5 59 55.9
QL03p021217 Quercus lobata HOM05D000023 ORTHO05D000014 5.6e-11 70.5 59 55.9
QL10p037399 Quercus lobata HOM05D000023 ORTHO05D000014 5.6e-11 70.5 59 55.9
arahy.Tifrunner.gnm1.ann1.47Q9LE Arachis hypogaea HOM05D000023 ORTHO05D000014 7.4e-11 70.1 64 51.6
arahy.Tifrunner.gnm1.ann1.59J3RY Arachis hypogaea HOM05D000023 ORTHO05D000014 7.4e-11 70.1 59 55.9
RcHm_v2.0_Chr6g0278171 Rosa chinensis HOM05D000023 ORTHO05D000014 7.4e-11 70.1 59 52.5
RcHm_v2.0_Chr6g0295001 Rosa chinensis HOM05D000023 ORTHO05D000014 7.4e-11 70.1 59 52.5
arahy.Tifrunner.gnm1.ann1.F23DGP Arachis hypogaea HOM05D000023 ORTHO05D000014 9.6e-11 69.7 64 50.0
TPR.G39959 Trifolium pratense HOM05D000023 ORTHO05D000014 9.6e-11 69.7 59 55.9
BcaC03g13506 Brassica carinata HOM05D000023 ORTHO05D000014 1.3e-10 69.3 40 77.5
Gorai.013G128300 Gossypium raimondii HOM05D000023 ORTHO05D000014 1.3e-10 69.3 56 60.7
Atru.chr11.1499 Acer truncatum HOM05D000023 ORTHO05D000014 1.6e-10 68.9 64 53.1
arahy.Tifrunner.gnm1.ann1.109VKY Arachis hypogaea HOM05D000023 ORTHO05D000014 1.6e-10 68.9 64 51.6
arahy.Tifrunner.gnm1.ann1.HDEZ1X Arachis hypogaea HOM05D000023 ORTHO05D000014 1.6e-10 68.9 63 54.0
Atru.chr12.1570 Acer truncatum HOM05D000023 ORTHO05D000014 2.1e-10 68.6 64 51.6
TWI18G0892 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 2.1e-10 68.6 63 50.8
TWI63G0054 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 2.1e-10 68.6 63 50.8
PSO700G0308 Papaver somniferum HOM05D000023 ORTHO05D000014 3.7e-10 67.8 64 54.7
PSO013G0236 Papaver somniferum HOM05D000023 ORTHO05D000014 4.8e-10 67.4 55 56.4
QL05p016189 Quercus lobata HOM05D000023 ORTHO05D000014 4.8e-10 67.4 56 58.9
arahy.Tifrunner.gnm1.ann1.KV4G29 Arachis hypogaea HOM05D000023 ORTHO05D000014 6.2e-10 67.0 64 46.9
PSO017G6237 Papaver somniferum HOM05D000023 ORTHO05D000014 6.2e-10 67.0 66 53.0
QL04p092962 Quercus lobata HOM05D000023 ORTHO05D000014 6.2e-10 67.0 56 57.1
TWI74G0862 Tripterygium wilfordii HOM05D000023 ORTHO05D000014 8.2e-10 66.6 63 49.2
QL01p016263 Quercus lobata HOM05D000023 ORTHO05D000014 1.1e-09 66.2 59 57.6
arahy.Tifrunner.gnm1.ann1.JSNF9J Arachis hypogaea HOM05D000023 ORTHO05D000014 1.8e-09 65.5 61 50.8
arahy.Tifrunner.gnm1.ann1.UW16ZC Arachis hypogaea HOM05D000023 ORTHO05D000014 1.8e-09 65.5 64 46.9
Dinv11853 Davidia involucrata HOM05D000023 ORTHO05D000014 1.8e-09 65.5 64 51.6
TPR.G20642 Trifolium pratense HOM05D000023 ORTHO05D000014 1.8e-09 65.5 44 63.6
FvH4_5g23531 Fragaria vesca HOM05D000023 ORTHO05D000014 3.1e-09 64.7 55 54.5
Os05g0414501 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 3.1e-09 64.7 61 52.5
Os06g0658400 Oryza sativa ssp. japonica HOM05D000023 ORTHO05D000014 3.1e-09 64.7 61 50.8
arahy.Tifrunner.gnm1.ann1.5A2PFR Arachis hypogaea HOM05D000023 ORTHO05D000014 4.0e-09 64.3 64 48.4
TPR.G30137 Trifolium pratense HOM05D000023 ORTHO05D000014 9.0e-09 63.2 70 45.7
RcHm_v2.0_Chr4g0434271 Rosa chinensis HOM05D000023 ORTHO05D000014 1.2e-08 62.8 59 54.2
TPR.G26330 Trifolium pratense HOM05D000023 ORTHO05D000014 1.2e-08 62.8 37 70.3
arahy.Tifrunner.gnm1.ann1.PERH2Y Arachis hypogaea HOM05D000023 ORTHO05D000014 1.5e-08 62.4 47 63.8
FvH4_5g08811 Fragaria vesca HOM05D000023 ORTHO05D000014 1.5e-08 62.4 53 50.9
arahy.Tifrunner.gnm1.ann1.MBXS5H Arachis hypogaea HOM05D000023 ORTHO05D000014 2.0e-08 62.0 59 52.5
PSO339G3850 Papaver somniferum HOM05D000023 ORTHO05D000014 2.6e-08 61.6 54 53.7
Dinv17138 Davidia involucrata HOM05D000023 ORTHO05D000014 4.5e-08 60.8 64 46.9
Atru.chr7.1505 Acer truncatum HOM05D000023 ORTHO05D000014 5.8e-08 60.5 57 50.9
arahy.Tifrunner.gnm1.ann1.S7GMVN Arachis hypogaea HOM05D000023 ORTHO05D000014 7.6e-08 60.1 50 60.0
BcaC03g16481 Brassica carinata HOM05D000023 ORTHO05D000014 1.0e-07 59.7 61 49.2
FvH4_6g40844 Fragaria vesca HOM05D000023 ORTHO05D000014 1.0e-07 59.7 42 64.3
arahy.Tifrunner.gnm1.ann1.HID98C Arachis hypogaea HOM05D000023 ORTHO05D000014 1.3e-07 59.3 50 58.0
FvH4_5g06632 Fragaria vesca HOM05D000023 ORTHO05D000014 1.3e-07 59.3 37 64.9
TPR.G20605 Trifolium pratense HOM05D000023 ORTHO05D000014 1.7e-07 58.9 50 58.0
MD17G1176800 Malus domestica HOM05D000023 ORTHO05D000014 2.2e-07 58.5 38 63.2
PSO782G2905 Papaver somniferum HOM05D000023 ORTHO05D000014 3.8e-07 57.8 56 46.4
CSS0027439 Camellia sinensis var. sinensis HOM05D000593 ORTHO05D000562 4.9e-07 57.4 58 44.8
Lj6g0019681 Lotus japonicus HOM05D000023 ORTHO05D000014 6.5e-07 57.0 38 63.2
SHI14569 Sapria himalayana HOM05D000023 ORTHO05D000014 6.5e-07 57.0 63 47.6
CSS0010773 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 8.4e-07 56.6 58 44.8
CSS0011123 Camellia sinensis var. sinensis HOM05D000023 ORTHO05D000014 8.4e-07 56.6 58 44.8
FvH4_7g16804 Fragaria vesca HOM05D000023 ORTHO05D000014 8.4e-07 56.6 46 52.2
PSO017G0124 Papaver somniferum HOM05D000023 ORTHO05D000014 1.1e-06 56.2 57 50.9
PSO017G0971 Papaver somniferum HOM05D000023 ORTHO05D000014 1.1e-06 56.2 57 50.9
PSO017G1031 Papaver somniferum HOM05D000023 ORTHO05D000014 1.1e-06 56.2 57 50.9
PSO017G4761 Papaver somniferum HOM05D000023 ORTHO05D000014 1.1e-06 56.2 57 50.9
PSO063G2876 Papaver somniferum HOM05D000023 ORTHO05D000014 1.1e-06 56.2 57 50.9
PSO063G3226 Papaver somniferum HOM05D000023 ORTHO05D000014 1.1e-06 56.2 57 50.9
PSO063G4346 Papaver somniferum HOM05D000023 ORTHO05D000014 1.1e-06 56.2 57 50.9
PSO063G7474 Papaver somniferum HOM05D000023 ORTHO05D000014 1.1e-06 56.2 57 50.9
PSO170G1134 Papaver somniferum HOM05D000023 ORTHO05D000014 1.1e-06 56.2 57 50.9
PSO170G1947 Papaver somniferum HOM05D000023 ORTHO05D000014 1.1e-06 56.2 57 50.9
PSO210G0286 Papaver somniferum HOM05D000023 ORTHO05D000014 1.1e-06 56.2 57 50.9
PSO478G1709 Papaver somniferum HOM05D000023 ORTHO05D000014 1.1e-06 56.2 57 50.9
PSO478G3870 Papaver somniferum HOM05D000023 ORTHO05D000014 1.1e-06 56.2 57 50.9
PSO675G2708 Papaver somniferum HOM05D000023 ORTHO05D000014 1.1e-06 56.2 57 50.9
PSO675G6543 Papaver somniferum HOM05D000023 ORTHO05D000014 1.1e-06 56.2 57 50.9
PSO675G8000 Papaver somniferum HOM05D000023 ORTHO05D000014 1.1e-06 56.2 57 50.9
PSO782G3350 Papaver somniferum HOM05D000023 ORTHO05D000014 1.1e-06 56.2 57 50.9
Lj4g0023845 Lotus japonicus HOM05D000023 ORTHO05D000014 1.4e-06 55.8 39 64.1
AUR62005034 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.5e-06 55.1 57 49.1
AUR62010486 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.5e-06 55.1 57 49.1
AUR62017341 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.5e-06 55.1 57 49.1
AUR62019364 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.5e-06 55.1 57 49.1
AUR62024763 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.5e-06 55.1 57 49.1
AUR62030082 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.5e-06 55.1 57 49.1
AUR62032748 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.5e-06 55.1 57 49.1
AUR62033875 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.5e-06 55.1 57 49.1
AUR62035427 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.5e-06 55.1 57 49.1
AUR62035857 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.5e-06 55.1 57 49.1
AUR62038522 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.5e-06 55.1 57 49.1
AUR62039095 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.5e-06 55.1 57 49.1
AUR62041775 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.5e-06 55.1 57 49.1
AUR62042701 Chenopodium quinoa HOM05D000023 ORTHO05D000014 2.5e-06 55.1 57 49.1
Glyma.18G197350 Glycine max HOM05D000023 ORTHO05D000014 2.5e-06 55.1 38 60.5
PSO384G4806 Papaver somniferum HOM05D000023 ORTHO05D000014 2.5e-06 55.1 53 52.8
Sopen10g016210 Solanum pennellii HOM05D000023 ORTHO05D000014 2.5e-06 55.1 64 40.6
PGSC0003DMG400017468 Solanum tuberosum HOM05D000023 ORTHO05D000014 2.5e-06 55.1 64 40.6
arahy.Tifrunner.gnm1.ann1.0KMR65 Arachis hypogaea HOM05D000023 ORTHO05D000014 3.2e-06 54.7 65 43.1
arahy.Tifrunner.gnm1.ann1.E5DIFE Arachis hypogaea HOM05D000023 ORTHO05D000014 3.2e-06 54.7 43 55.8
AUR62019609 Chenopodium quinoa HOM05D000023 ORTHO05D000014 4.2e-06 54.3 57 49.1
arahy.Tifrunner.gnm1.ann1.4F1AUH Arachis hypogaea HOM05D000023 ORTHO05D000014 5.5e-06 53.9 37 59.5
arahy.Tifrunner.gnm1.ann1.YGI54L Arachis hypogaea HOM05D000023 ORTHO05D000014 5.5e-06 53.9 38 60.5
arahy.Tifrunner.gnm1.ann1.ZW9ULP Arachis hypogaea HOM05D000023 ORTHO05D000014 5.5e-06 53.9 51 45.1
AUR62016849 Chenopodium quinoa HOM05D000023 ORTHO05D000014 5.5e-06 53.9 57 49.1
AUR62000817 Chenopodium quinoa HOM05D000023 ORTHO05D000014 9.3e-06 53.1 57 49.1
AUR62002256 Chenopodium quinoa HOM05D000074 ORTHO05D002365 9.3e-06 53.1 57 47.4


User provided reference genes

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