Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00743 Brassica carinata HOM05D002525 ORTHO05D002727 4.3e-30 134.0 70 100.0
C08p24130 Brassica napus HOM05D002525 ORTHO05D002727 1.3e-26 122.5 66 98.5
BolC8t50034H Brassica oleracea HOM05D002525 ORTHO05D002727 1.3e-26 122.5 66 98.5
BraA06t24937Z Brassica rapa HOM05D002525 ORTHO05D002727 6.7e-23 110.2 66 92.4
A06p18590 Brassica napus HOM05D002525 ORTHO05D002727 7.4e-22 106.7 66 89.4
Sp5g12940 Schrenkiella parvula HOM05D002525 ORTHO05D002727 8.5e-18 93.2 64 78.1
CARHR157980 Cardamine hirsuta HOM05D002525 ORTHO05D002727 9.4e-17 89.7 63 74.6
AL5G28840 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 4.7e-16 87.4 50 88.0
Thhalv10010311m.g Eutrema salsugineum HOM05D002525 ORTHO05D002727 2.3e-15 85.1 64 73.4
AT3G49140 Arabidopsis thaliana HOM05D002525 ORTHO05D002727 3.0e-15 84.7 50 86.0
Carub.0005s1537 Capsella rubella HOM05D002525 ORTHO05D002727 2.6e-14 81.6 48 83.3
Aa31LG4G17600 Aethionema arabicum HOM05D002525 ORTHO05D010173 1.3e-13 79.3 63 69.8
BcaB05g22963 Brassica carinata HOM05D002525 ORTHO05D002727 8.2e-13 76.6 44 86.4
AT5G24060 Arabidopsis thaliana HOM05D002525 ORTHO05D002727 7.0e-12 73.6 64 64.1
PSO478G0963 Papaver somniferum HOM05D002525 ORTHO05D002727 7.7e-11 70.1 67 55.2
Carub.0006s2178 Capsella rubella HOM05D002525 ORTHO05D002727 1.0e-10 69.7 64 62.5
Thhalv10004068m.g Eutrema salsugineum HOM05D002525 ORTHO05D002727 1.3e-10 69.3 66 59.1
PSO266G0052 Papaver somniferum HOM05D002525 ORTHO05D002727 1.3e-10 69.3 67 55.2
COL.COLO4_30295 Corchorus olitorius HOM05D002525 ORTHO05D002727 1.7e-10 68.9 61 59.0
BraA06t26410Z Brassica rapa HOM05D002525 ORTHO05D002727 2.9e-10 68.2 64 62.5
BcaNung01205 Brassica carinata HOM05D002525 ORTHO05D002727 5.0e-10 67.4 64 60.9
THA.LOC104814929 Tarenaya hassleriana HOM05D002525 ORTHO05D002727 6.5e-10 67.0 63 54.0
EL10Ac3g05402 Beta vulgaris HOM05D002525 ORTHO05D002727 8.5e-10 66.6 64 53.1
BcaNung01826 Brassica carinata HOM05D002525 ORTHO05D002727 8.5e-10 66.6 64 60.9
C07p43670 Brassica napus HOM05D002525 ORTHO05D007180 8.5e-10 66.6 64 60.9
BolC7t44897H Brassica oleracea HOM05D002525 ORTHO05D002727 8.5e-10 66.6 64 60.9
CARHR189530 Cardamine hirsuta HOM05D002525 ORTHO05D002727 8.5e-10 66.6 64 60.9
Ciclev10004809m.g Citrus clementina HOM05D002525 ORTHO05D002727 8.5e-10 66.6 63 58.7
Thecc.03G185700 Theobroma cacao HOM05D002525 ORTHO05D002727 8.5e-10 66.6 49 63.3
Duzib205G1599 Durio zibethinus HOM05D002525 ORTHO05D002727 1.1e-09 66.2 61 55.7
MBI01_g17607_MAGBIO Magnolia biondii HOM05D002525 ORTHO05D002727 1.1e-09 66.2 50 60.0
Nn1g01679 Nelumbo nucifera HOM05D002525 ORTHO05D002727 1.1e-09 66.2 63 52.4
AL6G35410 Arabidopsis lyrata HOM05D002525 ORTHO05D002727 1.9e-09 65.5 54 64.8
Cpa.g.sc107.123 Carica papaya HOM05D002525 ORTHO05D002727 1.9e-09 65.5 48 62.5
Potri.017G148600 Populus trichocarpa HOM05D002525 ORTHO05D002727 1.9e-09 65.5 48 62.5
Ah.07g206470 Amaranthus hybridus HOM05D002525 ORTHO05D002727 2.5e-09 65.1 49 59.2
Sopen06g012120 Solanum pennellii HOM05D002525 ORTHO05D002727 2.5e-09 65.1 64 53.1
TWI14G1392 Tripterygium wilfordii HOM05D002525 ORTHO05D002727 2.5e-09 65.1 63 58.7
ClCG05G008470 Citrullus lanatus HOM05D002525 ORTHO05D002727 3.2e-09 64.7 61 55.7
Cc02_g02270 Coffea canephora HOM05D002525 ORTHO05D002727 3.2e-09 64.7 63 52.4
Lalb_Chr21g0305281 Lupinus albus HOM05D002525 ORTHO05D002727 3.2e-09 64.7 47 59.6
TWI23G0431 Tripterygium wilfordii HOM05D002525 ORTHO05D002727 4.2e-09 64.3 63 57.1
GSVIVG01028827001 Vitis vinifera HOM05D002525 ORTHO05D002727 4.2e-09 64.3 52 55.8
arahy.Tifrunner.gnm1.ann1.QBZ9GT Arachis hypogaea HOM05D002525 ORTHO05D002727 5.5e-09 63.9 45 64.4
Haze_00057 Corylus avellana HOM05D002525 ORTHO05D002727 5.5e-09 63.9 64 50.0
Gohir.A11G225000 Gossypium hirsutum HOM05D002525 ORTHO05D002727 5.5e-09 63.9 61 52.5
Gohir.D11G228200 Gossypium hirsutum HOM05D002525 ORTHO05D002727 5.5e-09 63.9 61 52.5
Gorai.003G069200 Gossypium raimondii HOM05D002525 ORTHO05D002727 5.5e-09 63.9 61 52.5
Sp2g23260 Schrenkiella parvula HOM05D002525 ORTHO05D002727 5.5e-09 63.9 47 66.0
Hund04794 Selenicereus undatus HOM05D002525 ORTHO05D002727 5.5e-09 63.9 49 57.1
Actinidia08587 Actinidia chinensis HOM05D002525 ORTHO05D002727 7.2e-09 63.5 64 51.6
Gorai.004G117000 Gossypium raimondii HOM05D002525 ORTHO05D002727 7.2e-09 63.5 61 52.5
TWI39G0615 Tripterygium wilfordii HOM05D002525 ORTHO05D002727 7.2e-09 63.5 63 55.6
AUR62031435 Chenopodium quinoa HOM05D002525 ORTHO05D002727 9.4e-09 63.2 49 57.1
FvH4_7g30410 Fragaria vesca HOM05D002525 ORTHO05D002727 9.4e-09 63.2 52 59.6
FAN06G0126 Fragaria x ananassa HOM05D002525 ORTHO05D002727 9.4e-09 63.2 52 59.6
FAN06G4058 Fragaria x ananassa HOM05D002525 ORTHO05D002727 9.4e-09 63.2 52 59.6
Sed0017638 Sechium edule HOM05D002525 ORTHO05D002727 9.4e-09 63.2 61 54.1
PGSC0003DMG401028895 Solanum tuberosum HOM05D002525 ORTHO05D002727 9.4e-09 63.2 64 51.6
CSS0005283 Camellia sinensis var. sinensis HOM05D002525 ORTHO05D002727 1.2e-08 62.8 66 47.0
Cfa016300 Carpinus fangiana HOM05D002525 ORTHO05D002727 1.2e-08 62.8 45 60.0
MD01G1209500 Malus domestica HOM05D002525 ORTHO05D002727 1.2e-08 62.8 62 51.6
Nn6g32107 Nelumbo nucifera HOM05D002525 ORTHO05D002727 1.2e-08 62.8 52 53.8
Potri.004G072400 Populus trichocarpa HOM05D002525 ORTHO05D002727 1.2e-08 62.8 56 51.8
SalBow4G2719 Salvia bowleyana HOM05D002525 ORTHO05D002727 1.2e-08 62.8 64 48.4
SGA_v2.0_scaffold44G16756 Striga asiatica HOM05D002525 ORTHO05D002727 1.2e-08 62.8 64 50.0
Zm00001eb197710 Zea mays HOM05D002525 ORTHO05D002727 1.2e-08 62.8 45 64.4
CDE02G4087 Ceratophyllum demersum HOM05D002525 ORTHO05D002727 1.6e-08 62.4 48 58.3
Prupe.2G302100 Prunus persica HOM05D002525 ORTHO05D002727 1.6e-08 62.4 52 59.6
MD07G1279800 Malus domestica HOM05D002525 ORTHO05D002727 2.1e-08 62.0 52 59.6
Sc25g0000710 Simmondsia chinensis HOM05D002525 ORTHO05D002727 2.1e-08 62.0 64 50.0
CAN.G204.26 Capsicum annuum HOM05D002525 ORTHO05D002727 2.7e-08 61.6 64 48.4
MELO3C006952.2 Cucumis melo HOM05D002525 ORTHO05D002727 2.7e-08 61.6 61 50.8
DCAR_014523 Daucus carota HOM05D002525 ORTHO05D002727 2.7e-08 61.6 63 54.0
Oeu032744.1 Olea europaea HOM05D002525 ORTHO05D002727 2.7e-08 61.6 66 48.5
VMungo0464G0872 Vigna mungo HOM05D002525 ORTHO05D002727 2.7e-08 61.6 63 50.8
RcHm_v2.0_Chr1g0378561 Rosa chinensis HOM05D002525 ORTHO05D002727 3.6e-08 61.2 48 56.2
Sabra17G0123900 Salix brachista HOM05D002525 ORTHO05D002727 3.6e-08 61.2 45 62.2
ECA233G3789 Erigeron canadensis HOM05D002525 ORTHO05D002727 4.7e-08 60.8 47 61.7
FAN01G2222 Fragaria x ananassa HOM05D002525 ORTHO05D002727 4.7e-08 60.8 50 58.0
Oeu049095.1 Olea europaea HOM05D002525 ORTHO05D002727 4.7e-08 60.8 64 50.0
QL09p012476 Quercus lobata HOM05D002525 ORTHO05D002727 4.7e-08 60.8 45 60.0
SGA_v2.0_scaffold60G21118 Striga asiatica HOM05D002525 ORTHO05D002727 4.7e-08 60.8 64 46.9
Hma1.2p1_0327F.1_g126480 Hydrangea macrophylla HOM05D002525 ORTHO05D002727 6.1e-08 60.5 66 47.0
Phvul.004G106100 Phaseolus vulgaris HOM05D002525 ORTHO05D002727 6.1e-08 60.5 63 50.8
Lj2g0008696 Lotus japonicus HOM05D002525 ORTHO05D002727 8.0e-08 60.1 48 58.3
Sabra04G0047700 Salix brachista HOM05D002525 ORTHO05D002727 8.0e-08 60.1 61 54.1
Actinidia34163 Actinidia chinensis HOM05D002525 ORTHO05D002727 1.0e-07 59.7 64 46.9
CiPaw.05G261400 Carya illinoinensis HOM05D002525 ORTHO05D002727 1.0e-07 59.7 63 49.2
FAN10G2067 Fragaria x ananassa HOM05D002525 ORTHO05D002727 1.0e-07 59.7 50 58.0
FAN10G3931 Fragaria x ananassa HOM05D002525 ORTHO05D002727 1.0e-07 59.7 50 58.0
Migut.F00280 Erythranthe guttata HOM05D002525 ORTHO05D002727 1.4e-07 59.3 64 45.3
Gohir.A08G085500 Gossypium hirsutum HOM05D002525 ORTHO05D002727 1.4e-07 59.3 58 53.4
ECA238G3968 Erigeron canadensis HOM05D002525 ORTHO05D002727 1.8e-07 58.9 59 47.5
Glyma.09G129500 Glycine max HOM05D002525 ORTHO05D002727 1.8e-07 58.9 63 49.2
Nitab4.5_0016317g0020 Nicotiana tabacum HOM05D002525 ORTHO05D002727 1.8e-07 58.9 64 48.4
MSTRG.27078 Avicennia marina HOM05D002525 ORTHO05D002727 2.3e-07 58.5 55 49.1
Lalb_Chr19g0130551 Lupinus albus HOM05D002525 ORTHO05D002727 2.3e-07 58.5 63 47.6
Peaxi162Scf00444g00236 Petunia axillaris HOM05D002525 ORTHO05D002727 2.3e-07 58.5 64 46.9
Solyc03g007590.4 Solanum lycopersicum HOM05D002525 ORTHO05D002727 2.3e-07 58.5 64 46.9
Sopen03g003540 Solanum pennellii HOM05D002525 ORTHO05D002727 2.3e-07 58.5 64 46.9
Manes.14G021400 Manihot esculenta HOM05D002525 ORTHO05D002727 3.0e-07 58.2 63 50.8
Medtr6g052360 Medicago truncatula HOM05D002525 ORTHO05D002727 3.0e-07 58.2 63 46.0
Nitab4.5_0000472g0070 Nicotiana tabacum HOM05D002525 ORTHO05D002727 3.0e-07 58.2 64 46.9
Nitab4.5_0001331g0040 Nicotiana tabacum HOM05D002525 ORTHO05D002727 3.0e-07 58.2 64 46.9
Peaxi162Scf00618g00620 Petunia axillaris HOM05D002525 ORTHO05D002727 3.0e-07 58.2 64 48.4
Psat0s2905g0040 Pisum sativum HOM05D002525 ORTHO05D002727 3.0e-07 58.2 52 50.0
QL09p012520 Quercus lobata HOM05D002525 ORTHO05D002727 3.0e-07 58.2 43 55.8
Nitab4.5_0004854g0050 Nicotiana tabacum HOM05D002525 ORTHO05D002727 4.0e-07 57.8 64 46.9
vmacro06618 Vaccinium macrocarpon HOM05D002525 ORTHO05D002727 4.0e-07 57.8 63 47.6
Aqoxy7G00199 Aquilegia oxysepala HOM05D002525 ORTHO05D002727 5.2e-07 57.4 61 44.3
CsaV3_3G017550 Cucumis sativus L. HOM05D002525 ORTHO05D002727 5.2e-07 57.4 42 59.5
CANSAT21G1266 Cannabis sativa HOM05D002525 ORTHO05D002727 8.8e-07 56.6 63 47.6
FAN03G3427 Fragaria x ananassa HOM05D002525 ORTHO05D002727 8.8e-07 56.6 50 54.0
HanXRQChr14g0462571 Helianthus annuus HOM05D002525 ORTHO05D002727 8.8e-07 56.6 63 47.6
Dinv28381 Davidia involucrata HOM05D002525 ORTHO05D002727 1.2e-06 56.2 63 42.9
Sed0019908 Sechium edule HOM05D002525 ORTHO05D002727 1.2e-06 56.2 51 49.0
TPR.G9163 Trifolium pratense HOM05D002525 ORTHO05D002727 1.5e-06 55.8 63 46.0
Lsat_1_v5_gn_2_131421 Lactuca sativa HOM05D002525 ORTHO05D002727 2.6e-06 55.1 63 46.0
CAN.G126.37 Capsicum annuum HOM05D002525 ORTHO05D002727 3.3e-06 54.7 64 45.3
ClCG07G016560 Citrullus lanatus HOM05D002525 ORTHO05D002727 3.3e-06 54.7 64 45.3
MELO3C017686.2 Cucumis melo HOM05D002525 ORTHO05D002727 3.3e-06 54.7 64 45.3
Lsat_1_v5_gn_8_6520 Lactuca sativa HOM05D002525 ORTHO05D002727 4.4e-06 54.3 57 49.1
unitig_46.g18808 Utricularia gibba HOM05D002525 ORTHO05D002727 4.4e-06 54.3 62 40.3
Lj6A63G29 Lonicera japonica HOM05D002525 ORTHO05D002727 5.7e-06 53.9 53 47.2
AL5G41180 Arabidopsis lyrata HOM05D002525 ORTHO05D002727 7.5e-06 53.5 51 51.0
AT3G59300 Arabidopsis thaliana HOM05D002525 ORTHO05D002727 7.5e-06 53.5 51 51.0
A07p24600 Brassica napus HOM05D002525 ORTHO05D002727 7.5e-06 53.5 51 51.0
BraA07t30105Z Brassica rapa HOM05D002525 ORTHO05D002727 7.5e-06 53.5 51 51.0
Carub.0005s2604 Capsella rubella HOM05D002525 ORTHO05D002727 7.5e-06 53.5 51 51.0
CARHR169680 Cardamine hirsuta HOM05D002525 ORTHO05D002727 7.5e-06 53.5 51 51.0
Aa31LG10G13660 Aethionema arabicum HOM05D002525 ORTHO05D002727 9.7e-06 53.1 51 51.0
CDE09G0420 Ceratophyllum demersum HOM05D002525 ORTHO05D002727 9.7e-06 53.1 68 36.8
Haze_00705 Corylus avellana HOM05D002525 ORTHO05D002727 9.7e-06 53.1 51 49.0
Dinv22676 Davidia involucrata HOM05D002525 ORTHO05D002727 9.7e-06 53.1 51 49.0


User provided reference genes

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