Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00742 Brassica carinata HOM05D002525 ORTHO05D002727 3.4e-178 628.2 326 100.0
C08p24130 Brassica napus HOM05D002525 ORTHO05D002727 4.7e-79 298.9 316 57.6
BolC8t50034H Brassica oleracea HOM05D002525 ORTHO05D002727 3.1e-78 296.2 314 57.3
BcaC07g39387 Brassica carinata HOM05D002525 ORTHO05D002727 1.5e-77 293.9 314 57.0
A06p18590 Brassica napus HOM05D002525 ORTHO05D002727 2.0e-77 293.5 314 57.0
BraA06t24937Z Brassica rapa HOM05D002525 ORTHO05D002727 4.4e-77 292.4 314 56.7
Sp5g12940 Schrenkiella parvula HOM05D002525 ORTHO05D002727 1.5e-69 267.3 309 53.7
AL5G28840 Arabidopsis lyrata HOM05D000001 ORTHO05D000003 2.9e-68 263.1 307 53.4
Thhalv10010311m.g Eutrema salsugineum HOM05D002525 ORTHO05D002727 1.2e-66 257.7 306 52.9
Carub.0005s1537 Capsella rubella HOM05D002525 ORTHO05D002727 4.6e-66 255.8 303 52.1
AT3G49140 Arabidopsis thaliana HOM05D002525 ORTHO05D002727 1.5e-64 250.8 304 52.0
Aa31LG4G17600 Aethionema arabicum HOM05D002525 ORTHO05D010173 2.1e-58 230.3 345 44.9
BcaB05g22963 Brassica carinata HOM05D002525 ORTHO05D002727 6.5e-52 208.8 284 47.9
THA.LOC104814929 Tarenaya hassleriana HOM05D002525 ORTHO05D002727 1.6e-47 194.1 309 42.7
Thhalv10004068m.g Eutrema salsugineum HOM05D002525 ORTHO05D002727 1.7e-44 184.1 318 40.9
Sp2g23260 Schrenkiella parvula HOM05D002525 ORTHO05D002727 1.7e-39 167.5 330 38.2
Carub.0006s2178 Capsella rubella HOM05D002525 ORTHO05D002727 4.1e-38 162.9 305 39.7
AL6G35410 Arabidopsis lyrata HOM05D002525 ORTHO05D002727 5.9e-37 159.1 303 38.6
AT5G24060 Arabidopsis thaliana HOM05D002525 ORTHO05D002727 6.5e-36 155.6 304 39.1
BcaNung01205 Brassica carinata HOM05D002525 ORTHO05D002727 2.1e-34 150.6 307 38.8
BraA06t26410Z Brassica rapa HOM05D002525 ORTHO05D002727 3.0e-33 146.7 327 38.5
BolC7t44897H Brassica oleracea HOM05D002525 ORTHO05D002727 4.4e-32 142.9 327 37.6
Duzib205G1599 Durio zibethinus HOM05D002525 ORTHO05D002727 4.1e-30 136.3 315 31.7
Thecc.03G185700 Theobroma cacao HOM05D002525 ORTHO05D002727 4.1e-30 136.3 321 33.6
BcaNung01826 Brassica carinata HOM05D002525 ORTHO05D002727 9.1e-30 135.2 327 37.6
C07p43670 Brassica napus HOM05D002525 ORTHO05D007180 1.5e-29 134.4 311 37.0
A06p34830 Brassica napus HOM05D002525 ORTHO05D007180 2.6e-29 133.7 311 37.6
Gorai.003G069200 Gossypium raimondii HOM05D002525 ORTHO05D002727 2.5e-27 127.1 309 31.7
Gohir.D11G228200 Gossypium hirsutum HOM05D002525 ORTHO05D002727 1.2e-26 124.8 321 32.4
Gohir.D08G109300 Gossypium hirsutum HOM05D002525 ORTHO05D002727 6.1e-26 122.5 308 29.9
CARHR189530 Cardamine hirsuta HOM05D002525 ORTHO05D002727 1.0e-25 121.7 110 65.5
Gorai.004G117000 Gossypium raimondii HOM05D002525 ORTHO05D002727 2.3e-25 120.6 308 29.5
Gohir.A11G225000 Gossypium hirsutum HOM05D002525 ORTHO05D002727 5.2e-25 119.4 304 31.6
Atru.chr1.340 Acer truncatum HOM05D002525 ORTHO05D002727 1.1e-24 118.2 309 30.1
Gohir.A08G085500 Gossypium hirsutum HOM05D002525 ORTHO05D002727 1.5e-24 117.9 308 29.2
Hma1.2p1_0327F.1_g126480 Hydrangea macrophylla HOM05D002525 ORTHO05D002727 1.5e-24 117.9 95 58.9
Manes.14G021400 Manihot esculenta HOM05D002525 ORTHO05D002727 2.6e-24 117.1 90 62.2
Lj2g0008696 Lotus japonicus HOM05D002525 ORTHO05D002727 2.2e-23 114.0 94 61.7
Migut.F00280 Erythranthe guttata HOM05D002525 ORTHO05D002727 2.8e-23 113.6 88 59.1
Cpa.g.sc107.123 Carica papaya HOM05D002525 ORTHO05D002727 6.3e-23 112.5 335 32.2
VMungo0464G0872 Vigna mungo HOM05D002525 ORTHO05D002727 6.3e-23 112.5 100 57.0
GSVIVG01028827001 Vitis vinifera HOM05D002525 ORTHO05D002727 8.2e-23 112.1 100 57.0
CsaV3_3G017550 Cucumis sativus L. HOM05D002525 ORTHO05D002727 1.8e-22 110.9 98 55.1
Sabra04G0047700 Salix brachista HOM05D002525 ORTHO05D002727 1.8e-22 110.9 100 54.0
HanXRQChr14g0462571 Helianthus annuus HOM05D002525 ORTHO05D002727 3.1e-22 110.2 112 51.8
PGR042G0902 Punica granatum HOM05D002525 ORTHO05D002727 3.1e-22 110.2 324 29.6
arahy.Tifrunner.gnm1.ann1.QBZ9GT Arachis hypogaea HOM05D002525 ORTHO05D002727 7.0e-22 109.0 88 59.1
arahy.Tifrunner.gnm1.ann1.Y18RV1 Arachis hypogaea HOM05D002525 ORTHO05D002727 7.0e-22 109.0 88 59.1
MD07G1279800 Malus domestica HOM05D002525 ORTHO05D002727 7.0e-22 109.0 85 63.5
Prupe.2G302100 Prunus persica HOM05D002525 ORTHO05D002727 7.0e-22 109.0 76 67.1
PSO478G0963 Papaver somniferum HOM05D002525 ORTHO05D002727 2.0e-21 107.5 76 60.5
MSTRG.27078 Avicennia marina HOM05D002525 ORTHO05D002727 2.6e-21 107.1 94 54.3
Medtr6g052360 Medicago truncatula HOM05D002525 ORTHO05D002727 2.6e-21 107.1 108 53.7
Hund04794 Selenicereus undatus HOM05D002525 ORTHO05D002727 2.6e-21 107.1 90 54.4
MELO3C006952.2 Cucumis melo HOM05D002525 ORTHO05D002727 3.5e-21 106.7 98 53.1
SalBow4G2719 Salvia bowleyana HOM05D002525 ORTHO05D002727 3.5e-21 106.7 92 56.5
CSS0005283 Camellia sinensis var. sinensis HOM05D002525 ORTHO05D002727 4.5e-21 106.3 92 55.4
CSS0013153 Camellia sinensis var. sinensis HOM05D002525 ORTHO05D002727 4.5e-21 106.3 92 55.4
CANSAT21G1266 Cannabis sativa HOM05D002525 ORTHO05D002727 4.5e-21 106.3 93 55.9
Cc02_g02270 Coffea canephora HOM05D002525 ORTHO05D002727 5.9e-21 105.9 92 54.3
TPR.G9163 Trifolium pratense HOM05D002525 ORTHO05D002727 5.9e-21 105.9 88 54.5
Dinv28381 Davidia involucrata HOM05D002525 ORTHO05D002727 1.0e-20 105.1 90 58.9
FAN10G2067 Fragaria x ananassa HOM05D002525 ORTHO05D002727 1.0e-20 105.1 97 58.8
Lsat_1_v5_gn_2_131421 Lactuca sativa HOM05D002525 ORTHO05D002727 1.3e-20 104.8 119 50.4
Oeu032744.1 Olea europaea HOM05D002525 ORTHO05D002727 1.3e-20 104.8 101 50.5
Sc25g0000710 Simmondsia chinensis HOM05D002525 ORTHO05D002727 1.3e-20 104.8 90 55.6
Ca_26806_v3 Cicer arietinum L. HOM05D002525 ORTHO05D002727 1.7e-20 104.4 108 50.9
PSO266G0052 Papaver somniferum HOM05D002525 ORTHO05D002727 1.7e-20 104.4 98 53.1
ECA238G3968 Erigeron canadensis HOM05D002525 ORTHO05D002727 2.2e-20 104.0 92 56.5
Ciclev10004809m.g Citrus clementina HOM05D002525 ORTHO05D002727 2.9e-20 103.6 107 52.3
Phvul.004G106100 Phaseolus vulgaris HOM05D002525 ORTHO05D002727 2.9e-20 103.6 106 54.7
Potri.004G072400 Populus trichocarpa HOM05D002525 ORTHO05D002727 2.9e-20 103.6 118 50.0
Nn1g01679 Nelumbo nucifera HOM05D002525 ORTHO05D002727 3.8e-20 103.2 168 39.3
Oeu049095.1 Olea europaea HOM05D002525 ORTHO05D002727 3.8e-20 103.2 94 53.2
TWI39G0615 Tripterygium wilfordii HOM05D002525 ORTHO05D002727 3.8e-20 103.2 93 53.8
FvH4_7g30410 Fragaria vesca HOM05D002525 ORTHO05D002727 5.0e-20 102.8 97 57.7
FAN06G4058 Fragaria x ananassa HOM05D002525 ORTHO05D002727 5.0e-20 102.8 97 58.8
FAN01G2222 Fragaria x ananassa HOM05D002525 ORTHO05D002727 6.5e-20 102.4 97 57.7
FAN06G0126 Fragaria x ananassa HOM05D002525 ORTHO05D002727 6.5e-20 102.4 97 57.7
Potri.017G148600 Populus trichocarpa HOM05D002525 ORTHO05D002727 6.5e-20 102.4 135 45.9
Sopen03g003540 Solanum pennellii HOM05D002525 ORTHO05D002727 1.1e-19 101.7 113 48.7
unitig_46.g18808 Utricularia gibba HOM05D002525 ORTHO05D002727 1.1e-19 101.7 104 52.9
FAN03G3427 Fragaria x ananassa HOM05D002525 ORTHO05D002727 1.5e-19 101.3 96 57.3
Glyma.09G129500 Glycine max HOM05D002525 ORTHO05D002727 1.5e-19 101.3 114 50.9
Sed0017638 Sechium edule HOM05D002525 ORTHO05D002727 1.5e-19 101.3 120 49.2
AUR62031435 Chenopodium quinoa HOM05D002525 ORTHO05D002727 1.9e-19 100.9 132 47.7
Glyma.16G177400 Glycine max HOM05D002525 ORTHO05D002727 1.9e-19 100.9 110 50.0
Solyc03g007590.4 Solanum lycopersicum HOM05D002525 ORTHO05D002727 1.9e-19 100.9 113 48.7
Lalb_Chr19g0130551 Lupinus albus HOM05D002525 ORTHO05D002727 3.2e-19 100.1 90 56.7
TAR375G0662 Trochodendron aralioides HOM05D002525 ORTHO05D002727 3.2e-19 100.1 111 48.6
Psat0s2905g0040 Pisum sativum HOM05D002525 ORTHO05D002727 4.2e-19 99.8 106 50.0
Ah.07g206470 Amaranthus hybridus HOM05D002525 ORTHO05D002727 9.4e-19 98.6 186 39.8
EL10Ac3g05402 Beta vulgaris HOM05D002525 ORTHO05D002727 1.6e-18 97.8 175 38.9
CAN.G126.37 Capsicum annuum HOM05D002525 ORTHO05D002727 1.6e-18 97.8 114 47.4
QL09p012476 Quercus lobata HOM05D002525 ORTHO05D002727 2.1e-18 97.4 314 28.7
CAN.G204.26 Capsicum annuum HOM05D002525 ORTHO05D002727 3.6e-18 96.7 87 54.0
Nitab4.5_0000472g0070 Nicotiana tabacum HOM05D002525 ORTHO05D002727 3.6e-18 96.7 118 47.5
Actinidia34163 Actinidia chinensis HOM05D002525 ORTHO05D002727 4.7e-18 96.3 88 51.1
Lalb_Chr21g0305281 Lupinus albus HOM05D002525 ORTHO05D002727 4.7e-18 96.3 92 50.0
SGA_v2.0_scaffold60G21118 Striga asiatica HOM05D002525 ORTHO05D002727 4.7e-18 96.3 108 47.2
MD01G1209500 Malus domestica HOM05D002525 ORTHO05D002727 1.0e-17 95.1 98 54.1
MBI01_g17607_MAGBIO Magnolia biondii HOM05D002525 ORTHO05D002727 1.4e-17 94.7 103 45.6
MSTRG.8478 Avicennia marina HOM05D002525 ORTHO05D002727 1.8e-17 94.4 94 51.1
Nitab4.5_0004854g0050 Nicotiana tabacum HOM05D002525 ORTHO05D002727 1.8e-17 94.4 99 47.5
Aqoxy7G00199 Aquilegia oxysepala HOM05D002525 ORTHO05D002727 4.0e-17 93.2 115 45.2
Solyc06g036340.4 Solanum lycopersicum HOM05D002525 ORTHO05D002727 4.0e-17 93.2 100 50.0
CiPaw.05G261400 Carya illinoinensis HOM05D002525 ORTHO05D002727 5.2e-17 92.8 118 48.3
Sopen06g012120 Solanum pennellii HOM05D002525 ORTHO05D002727 6.7e-17 92.4 98 50.0
Nitab4.5_0001331g0040 Nicotiana tabacum HOM05D002525 ORTHO05D002727 1.2e-16 91.7 118 48.3
RcHm_v2.0_Chr1g0378561 Rosa chinensis HOM05D002525 ORTHO05D002727 1.2e-16 91.7 174 38.5
FAN10G3931 Fragaria x ananassa HOM05D002525 ORTHO05D002727 2.0e-16 90.9 174 39.1
CDE02G4087 Ceratophyllum demersum HOM05D002525 ORTHO05D002727 2.6e-16 90.5 100 48.0
COL.COLO4_30295 Corchorus olitorius HOM05D002525 ORTHO05D002727 3.3e-16 90.1 258 28.3
Nitab4.5_0003772g0020 Nicotiana tabacum HOM05D002525 ORTHO05D002727 3.3e-16 90.1 98 46.9
Actinidia08587 Actinidia chinensis HOM05D002525 ORTHO05D002727 4.4e-16 89.7 106 48.1
Nn6g32107 Nelumbo nucifera HOM05D002525 ORTHO05D002727 9.7e-16 88.6 115 46.1
PGSC0003DMG401028895 Solanum tuberosum HOM05D002525 ORTHO05D002727 1.3e-15 88.2 101 48.5
Rhsim03G0191900 Rhododendron simsii HOM05D002525 ORTHO05D002727 2.8e-15 87.0 94 46.8
TWI23G0431 Tripterygium wilfordii HOM05D002525 ORTHO05D002727 6.3e-15 85.9 110 47.3
vmacro06618 Vaccinium macrocarpon HOM05D002525 ORTHO05D002727 1.4e-14 84.7 59 57.6
SGA_v2.0_scaffold44G16756 Striga asiatica HOM05D002525 ORTHO05D002727 2.4e-14 84.0 103 44.7
Haze_00057 Corylus avellana HOM05D002525 ORTHO05D002727 1.2e-13 81.6 211 30.3
Sabra17G0123900 Salix brachista HOM05D002525 ORTHO05D002727 1.6e-13 81.3 93 46.2
Cfa016300 Carpinus fangiana HOM05D002525 ORTHO05D002727 4.5e-13 79.7 208 29.3
Lsat_1_v5_gn_8_6520 Lactuca sativa HOM05D002525 ORTHO05D002727 4.5e-13 79.7 143 41.3
DCAR_014523 Daucus carota HOM05D002525 ORTHO05D002727 1.3e-12 78.2 95 44.2
Peaxi162Scf00444g00236 Petunia axillaris HOM05D002525 ORTHO05D002727 2.2e-12 77.4 94 46.8
Zm00001eb197710 Zea mays HOM05D002525 ORTHO05D002727 3.8e-12 76.6 104 37.5
AUR62021105 Chenopodium quinoa HOM05D002525 ORTHO05D002727 8.5e-12 75.5 118 40.7
CANSAT21G0987 Cannabis sativa HOM05D005264 ORTHO05D005428 3.2e-11 73.6 58 51.7
ECA233G3789 Erigeron canadensis HOM05D002525 ORTHO05D002727 7.2e-11 72.4 171 34.5
ClCG05G008470 Citrullus lanatus HOM05D002525 ORTHO05D002727 9.4e-11 72.0 108 39.8
Lj1A1006G37 Lonicera japonica HOM05D002525 ORTHO05D002727 1.2e-10 71.6 96 38.5
Os11g0544000 Oryza sativa ssp. japonica HOM05D002525 ORTHO05D002727 1.4e-09 68.2 103 34.0
Peaxi162Scf00618g00620 Petunia axillaris HOM05D002525 ORTHO05D002727 1.4e-09 68.2 83 43.4
SEGI_05472 Sequoiadendron giganteum HOM05D002525 ORTHO05D002727 1.4e-09 68.2 108 35.2
AL5G28710 Arabidopsis lyrata HOM05D002525 ORTHO05D002727 6.8e-09 65.9 39 89.7
AL5G28730 Arabidopsis lyrata HOM05D002525 ORTHO05D002727 6.8e-09 65.9 39 89.7
AL5G28790 Arabidopsis lyrata HOM05D002525 ORTHO05D002727 6.8e-09 65.9 39 89.7
arahy.Tifrunner.gnm1.ann1.SIT2RR Arachis hypogaea HOM05D002525 ORTHO05D002727 9.8e-08 62.0 113 40.7
Oeu044815.2 Olea europaea HOM05D002525 ORTHO05D002727 9.8e-08 62.0 89 38.2
arahy.Tifrunner.gnm1.ann1.IK5C32 Arachis hypogaea HOM05D002525 ORTHO05D002727 2.8e-07 60.5 113 39.8


User provided reference genes

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