Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00690 Brassica carinata HOM05D004041 ORTHO05D004564 9.0e-209 730.7 603 100.0
BraA06t24900Z Brassica rapa HOM05D004041 ORTHO05D004564 7.1e-137 491.9 604 78.3
A06p18110 Brassica napus HOM05D004041 ORTHO05D004564 4.6e-136 489.2 604 78.1
C08p24610 Brassica napus HOM05D004041 ORTHO05D004564 1.6e-133 480.7 607 65.9
BcaC07g39425 Brassica carinata HOM05D004041 ORTHO05D004564 2.8e-133 479.9 603 66.0
BolC8t50077H Brassica oleracea HOM05D004041 ORTHO05D004564 6.2e-133 478.8 609 65.0
AL5G29450 Arabidopsis lyrata HOM05D004041 ORTHO05D004564 2.1e-120 437.2 615 60.3
Sp5g12500 Schrenkiella parvula HOM05D004041 ORTHO05D004564 1.5e-115 421.0 551 74.0
CARHR158630 Cardamine hirsuta HOM05D004041 ORTHO05D004564 2.4e-113 413.7 610 60.5
Carub.0005s1594 Capsella rubella HOM05D004041 ORTHO05D004564 3.0e-103 380.2 549 67.4
Thhalv10010217m.g Eutrema salsugineum HOM05D004041 ORTHO05D004564 1.3e-101 374.8 546 66.7
AT3G49601 Arabidopsis thaliana HOM05D004041 ORTHO05D004564 1.8e-92 344.4 525 63.6
Aa31LG4G18100 Aethionema arabicum HOM05D004041 ORTHO05D004564 1.8e-71 274.6 204 76.5
THA.LOC104799001 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 2.0e-62 244.6 200 70.0
PGR119G2538 Punica granatum HOM05D004041 ORTHO05D004564 3.5e-51 207.2 212 59.4
Manes.03G046500 Manihot esculenta HOM05D004041 ORTHO05D004564 8.6e-50 202.6 194 61.9
MD15G1111100 Malus domestica HOM05D004041 ORTHO05D004564 1.5e-49 201.8 197 60.9
Sabra06G0181500 Salix brachista HOM05D004041 ORTHO05D004564 1.5e-49 201.8 245 54.7
Potri.006G233000 Populus trichocarpa HOM05D004041 ORTHO05D004564 1.6e-48 198.4 207 58.5
Prupe.1G463200 Prunus persica HOM05D004041 ORTHO05D004564 6.1e-48 196.4 197 58.9
RcHm_v2.0_Chr6g0312381 Rosa chinensis HOM05D004041 ORTHO05D004564 1.0e-47 195.7 208 56.7
FAN15G2764 Fragaria x ananassa HOM05D004041 ORTHO05D004564 1.8e-47 194.9 208 58.2
Lj1g0018267 Lotus japonicus HOM05D004041 ORTHO05D004564 2.3e-47 194.5 215 55.3
FAN27G0182 Fragaria x ananassa HOM05D004041 ORTHO05D004564 3.0e-47 194.1 208 59.1
Eucgr.H02470 Eucalyptus grandis HOM05D004041 ORTHO05D004564 5.2e-47 193.4 211 56.9
FAN20G2913 Fragaria x ananassa HOM05D004041 ORTHO05D004564 6.8e-47 193.0 208 59.1
GSVIVG01035595001 Vitis vinifera HOM05D004041 ORTHO05D004564 6.8e-47 193.0 146 70.5
Glyma.17G200600 Glycine max HOM05D004041 ORTHO05D004564 8.9e-47 192.6 209 56.9
Phvul.006G038688 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.2e-46 192.2 219 53.0
Sed0021561 Sechium edule HOM05D004041 ORTHO05D004564 1.2e-46 192.2 215 54.4
arahy.Tifrunner.gnm1.ann1.1H4CIU Arachis hypogaea HOM05D004041 ORTHO05D004564 1.5e-46 191.8 204 55.9
ClCG08G012810 Citrullus lanatus HOM05D004041 ORTHO05D004564 1.5e-46 191.8 206 58.7
MD08G1133100 Malus domestica HOM05D004041 ORTHO05D004564 1.5e-46 191.8 198 58.1
CsaV3_2G031560 Cucumis sativus L. HOM05D004041 ORTHO05D004564 2.0e-46 191.4 217 54.8
Lj8C419G2 Lonicera japonica HOM05D004041 ORTHO05D004564 2.0e-46 191.4 146 71.9
FvH4_2g30620 Fragaria vesca HOM05D004041 ORTHO05D004564 2.6e-46 191.0 208 58.2
FAN24G0669 Fragaria x ananassa HOM05D004041 ORTHO05D004564 2.6e-46 191.0 208 58.2
VMungo1383G3608 Vigna mungo HOM05D004041 ORTHO05D004564 4.4e-46 190.3 210 53.8
Psat6g031640 Pisum sativum HOM05D004041 ORTHO05D004564 5.7e-46 189.9 192 59.4
Glyma.14G131900 Glycine max HOM05D004041 ORTHO05D004564 7.5e-46 189.5 216 54.2
Ciclev10007432m.g Citrus clementina HOM05D004041 ORTHO05D004564 1.7e-45 188.3 201 55.7
Phvul.001G088700 Phaseolus vulgaris HOM05D004041 ORTHO05D004564 1.7e-45 188.3 211 55.9
TWI15G0012 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 1.1e-44 185.7 220 55.0
Atru.chr4.1391 Acer truncatum HOM05D004041 ORTHO05D004564 5.4e-44 183.3 216 53.7
Ca_12887_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 5.4e-44 183.3 219 52.5
Hund03240 Selenicereus undatus HOM05D004041 ORTHO05D004564 7.0e-44 183.0 210 54.3
Lalb_Chr23g0268921 Lupinus albus HOM05D004041 ORTHO05D004564 2.0e-43 181.4 212 53.3
Lalb_Chr11g0064071 Lupinus albus HOM05D004041 ORTHO05D004564 3.5e-43 180.6 213 51.6
THA.LOC109116738 Tarenaya hassleriana HOM05D004041 ORTHO05D004564 5.9e-43 179.9 128 72.7
Sc06g0000040 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.0e-42 179.1 158 63.9
Sc06g0001360 Simmondsia chinensis HOM05D004041 ORTHO05D004564 1.0e-42 179.1 158 63.9
AUR62020692 Chenopodium quinoa HOM05D004041 ORTHO05D004564 1.3e-42 178.7 216 51.4
EL10Ac2g03659 Beta vulgaris HOM05D004041 ORTHO05D004564 2.3e-42 177.9 227 48.9
TAR383G1094 Trochodendron aralioides HOM05D004041 ORTHO05D004564 5.0e-42 176.8 204 51.5
COL.COLO4_09287 Corchorus olitorius HOM05D004041 ORTHO05D004564 8.6e-42 176.0 210 53.3
Actinidia12476 Actinidia chinensis HOM05D004041 ORTHO05D004564 1.5e-41 175.3 231 48.1
CiPaw.07G050600 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.9e-41 174.9 208 52.4
DCAR_004521 Daucus carota HOM05D004041 ORTHO05D004564 2.5e-41 174.5 144 68.1
Peaxi162Scf00213g01515 Petunia axillaris HOM05D004041 ORTHO05D004564 2.5e-41 174.5 184 54.3
CSS0017741 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 4.3e-41 173.7 211 51.7
HanXRQChr10g0299041 Helianthus annuus HOM05D004041 ORTHO05D004564 2.1e-40 171.4 211 51.2
QL12p024601 Quercus lobata HOM05D004041 ORTHO05D004564 2.1e-40 171.4 215 51.6
Nitab4.5_0000288g0130 Nicotiana tabacum HOM05D004041 ORTHO05D004564 3.6e-40 170.6 210 52.4
TWI60G0712 Tripterygium wilfordii HOM05D004041 ORTHO05D004564 3.6e-40 170.6 181 58.0
AUR62028033 Chenopodium quinoa HOM05D004041 ORTHO05D004564 6.2e-40 169.9 216 49.5
Ah.10g033610 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.0e-39 169.1 204 50.5
Lsat_1_v5_gn_4_74560 Lactuca sativa HOM05D004041 ORTHO05D004564 1.0e-39 169.1 209 50.7
PGSC0003DMG401029567 Solanum tuberosum HOM05D004041 ORTHO05D004564 1.0e-39 169.1 149 61.7
CiPaw.07G215400 Carya illinoinensis HOM05D004041 ORTHO05D004564 1.4e-39 168.7 210 50.0
Gohir.A06G171600 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.4e-39 168.7 203 52.2
Gorai.010G210300 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.4e-39 168.7 203 52.7
Duzib128G1534 Durio zibethinus HOM05D004041 ORTHO05D004564 1.8e-39 168.3 211 52.1
Nitab4.5_0008752g0030 Nicotiana tabacum HOM05D004041 ORTHO05D004564 1.8e-39 168.3 193 54.9
Gohir.D06G179700 Gossypium hirsutum HOM05D004041 ORTHO05D004564 2.3e-39 167.9 203 51.7
SalBow8G3032 Salvia bowleyana HOM05D004041 ORTHO05D004564 2.3e-39 167.9 198 50.5
Thecc.10G127600 Theobroma cacao HOM05D004041 ORTHO05D004564 2.3e-39 167.9 211 51.7
BcaC09g49964 Brassica carinata HOM05D004041 ORTHO05D004564 3.1e-39 167.5 638 37.0
Cc03_g09420 Coffea canephora HOM05D004041 ORTHO05D004564 1.5e-38 165.2 212 49.5
Duzib106G1246 Durio zibethinus HOM05D004041 ORTHO05D004564 1.5e-38 165.2 211 50.2
Migut.E01401 Erythranthe guttata HOM05D004041 ORTHO05D004564 2.0e-38 164.9 200 50.5
Solyc08g074440.4 Solanum lycopersicum HOM05D004041 ORTHO05D004564 2.0e-38 164.9 200 52.0
PSO541G4756 Papaver somniferum HOM05D004041 ORTHO05D004564 2.6e-38 164.5 159 60.4
Sopen08g023080 Solanum pennellii HOM05D004041 ORTHO05D004564 4.4e-38 163.7 149 60.4
CAN.G195.14 Capsicum annuum HOM05D004041 ORTHO05D004564 9.8e-38 162.5 167 57.5
C01p30700 Brassica napus HOM05D004041 ORTHO05D004564 2.9e-37 161.0 140 69.3
Aqoxy7G02570 Aquilegia oxysepala HOM05D004041 ORTHO05D004564 1.4e-36 158.7 151 58.3
SGA_v2.0_scaffold121G33039 Striga asiatica HOM05D003985 ORTHO05D005253 2.4e-36 157.9 214 49.5
MBI11_g09070_MAGBIO Magnolia biondii HOM05D004041 ORTHO05D004564 1.2e-35 155.6 202 50.0
ATR0665G601 Amborella trichopoda HOM05D004041 ORTHO05D004564 2.7e-35 154.5 210 46.7
SEGI_30814 Sequoiadendron giganteum HOM05D004041 ORTHO05D004564 7.8e-35 152.9 157 55.4
Lj8C415T2 Lonicera japonica HOM05D004041 ORTHO05D004564 3.0e-34 151.0 111 73.0
Mapoly0057s0059 Marchantia polymorpha HOM05D004041 ORTHO05D004564 5.0e-34 150.2 149 57.0
Thecc.10G128300 Theobroma cacao HOM05D004041 ORTHO05D004564 6.6e-34 149.8 145 60.0
PSO210G2134 Papaver somniferum HOM05D004041 ORTHO05D004564 8.6e-34 149.4 143 59.4
Thecc.10G128100 Theobroma cacao HOM05D004041 ORTHO05D004564 1.9e-33 148.3 145 60.0
Glyma.11G174282 Glycine max HOM05D004041 ORTHO05D004564 2.5e-33 147.9 118 66.9
ECA234G4028 Erigeron canadensis HOM05D004041 ORTHO05D004564 3.3e-33 147.5 200 46.0
Gohir.D06G179400 Gossypium hirsutum HOM05D004041 ORTHO05D004564 3.3e-33 147.5 153 56.2
Pp3c3_10000 Physcomitrium patens HOM05D004041 ORTHO05D004564 4.3e-33 147.1 151 55.6
PSO832G4585 Papaver somniferum HOM05D004041 ORTHO05D004564 5.6e-33 146.7 145 58.6
vmacro00640 Vaccinium macrocarpon HOM05D004041 ORTHO05D004564 7.3e-33 146.4 111 69.4
Cpa.g.sc117.15 Carica papaya HOM05D004041 ORTHO05D004564 9.5e-33 146.0 111 70.3
Nitab4.5_0000648g0040 Nicotiana tabacum HOM05D004041 ORTHO05D004564 9.5e-33 146.0 182 51.6
CDE07G1163 Ceratophyllum demersum HOM05D004041 ORTHO05D004564 3.6e-32 144.1 193 47.7
Gorai.010G210000 Gossypium raimondii HOM05D004041 ORTHO05D004564 3.6e-32 144.1 153 55.6
TPR.G10377 Trifolium pratense HOM05D004041 ORTHO05D004564 4.7e-32 143.7 109 69.7
AagrBONN_evm.TU.Sc2ySwM_344.5195 Anthoceros agrestis HOM05D004041 ORTHO05D004564 1.1e-31 142.5 149 53.0
CANSAT21G2467 Cannabis sativa HOM05D004041 ORTHO05D004564 1.1e-31 142.5 165 53.9
Medtr1g010100 Medicago truncatula HOM05D004041 ORTHO05D004564 3.1e-31 141.0 115 67.0
CSS0020148 Camellia sinensis var. sinensis HOM05D004041 ORTHO05D004564 4.0e-31 140.6 103 70.9
Nn5g27656 Nelumbo nucifera HOM05D004041 ORTHO05D004564 6.8e-31 139.8 130 60.0
Zm00001eb344480 Zea mays HOM05D004041 ORTHO05D004564 6.8e-31 139.8 167 53.9
TPR.G20436 Trifolium pratense HOM05D004041 ORTHO05D004564 1.2e-30 139.0 109 68.8
Oeu026036.1 Olea europaea HOM05D004041 ORTHO05D004564 1.5e-30 138.7 118 61.9
CBR_g88579 Chara braunii HOM05D004041 ORTHO05D004564 5.4e-28 130.2 148 50.7
Zm00001eb204710 Zea mays HOM05D004041 ORTHO05D004564 2.7e-27 127.9 174 48.3
BolC3t18797H Brassica oleracea HOM05D004041 ORTHO05D004564 6.6e-26 123.2 144 59.0
RcHm_v2.0_Chr4g0410401 Rosa chinensis HOM05D004041 ORTHO05D004564 2.5e-25 121.3 91 67.0
Ah.11g044190 Amaranthus hybridus HOM05D004041 ORTHO05D004564 1.6e-24 118.6 118 55.9
TPR.G211 Trifolium pratense HOM05D004041 ORTHO05D004564 3.6e-24 117.5 96 65.6
Cpa.g.c48129 Carica papaya HOM05D004041 ORTHO05D004564 6.2e-24 116.7 81 74.1
Migut.A00845 Erythranthe guttata HOM05D004041 ORTHO05D004564 6.2e-24 116.7 143 51.7
Migut.A00847 Erythranthe guttata HOM05D004041 ORTHO05D004564 6.2e-24 116.7 143 51.7
Gohir.A06G171302 Gossypium hirsutum HOM05D004041 ORTHO05D004564 1.1e-23 115.9 133 52.6
TAR626G0117 Trochodendron aralioides HOM05D002987 ORTHO05D003359 5.2e-23 113.6 96 64.6
Dinv09449 Davidia involucrata HOM05D003985 ORTHO05D005253 1.2e-22 112.5 193 42.0
Dinv37476 Davidia involucrata HOM05D000079 ORTHO05D000211 3.4e-22 110.9 187 43.3
Gohir.D06G179300 Gossypium hirsutum HOM05D004041 ORTHO05D004564 7.6e-22 109.8 129 52.7
Zm00001eb204730 Zea mays HOM05D004041 ORTHO05D004564 9.9e-22 109.4 105 58.1
MCO09G628 Micromonas commoda HOM05D004041 ORTHO05D004564 2.2e-21 108.2 149 47.7
Zm00001eb204800 Zea mays HOM05D004041 ORTHO05D004564 3.7e-21 107.5 108 57.4
Mapoly0057s0051 Marchantia polymorpha HOM05D004041 ORTHO05D004564 6.4e-21 106.7 136 50.0
Zm00001eb204790 Zea mays HOM05D004041 ORTHO05D004564 8.4e-21 106.3 109 56.0
Zm00001eb204750 Zea mays HOM05D004041 ORTHO05D004564 1.4e-20 105.5 100 58.0
Zm00001eb204810 Zea mays HOM05D004041 ORTHO05D004564 1.4e-20 105.5 100 58.0
Nn8g41252 Nelumbo nucifera HOM05D004041 ORTHO05D004564 1.9e-20 105.1 140 47.1
ATR0665G238 Amborella trichopoda HOM05D004041 ORTHO05D004564 2.4e-20 104.8 119 50.4
Zm00001eb204770 Zea mays HOM05D004041 ORTHO05D004564 7.1e-20 103.2 103 56.3
Mapoly0018s0007 Marchantia polymorpha HOM05D004041 ORTHO05D004564 4.6e-19 100.5 159 40.9
Zm00001eb204830 Zea mays HOM05D004041 ORTHO05D004564 6.0e-19 100.1 100 55.0
Zm00001eb204820 Zea mays HOM05D004041 ORTHO05D004564 1.3e-18 99.0 101 55.4
Ca_11409_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 3.9e-18 97.4 112 51.8
Rhsim07G0241300 Rhododendron simsii HOM05D004041 ORTHO05D004564 3.9e-18 97.4 98 54.1
Gorai.010G209300 Gossypium raimondii HOM05D004041 ORTHO05D004564 6.6e-18 96.7 143 46.2
RhsimUnG0236200 Rhododendron simsii HOM05D004041 ORTHO05D004564 3.3e-17 94.4 98 54.1
BcaC01g02423 Brassica carinata HOM05D004041 ORTHO05D004564 4.3e-17 94.0 78 75.6
Ca_11411_v3 Cicer arietinum L. HOM05D004041 ORTHO05D004564 5.6e-17 93.6 112 50.0
CARHR261000 Cardamine hirsuta HOM05D004041 ORTHO05D004564 1.1e-15 89.4 62 75.8
Gorai.010G209900 Gossypium raimondii HOM05D004041 ORTHO05D004564 2.4e-15 88.2 157 40.8
BcaC07g37448 Brassica carinata HOM05D050459 ORTHO05D039820 6.8e-15 86.7 90 63.3
SalBow7G2142 Salvia bowleyana HOM05D004041 ORTHO05D004564 6.8e-15 86.7 98 50.0
Haze_21676 Corylus avellana HOM05D063909 ORTHO05D004564 1.2e-14 85.9 111 51.4
PRCOL_00006922 Prasinoderma coloniale HOM05D004041 ORTHO05D004564 1.5e-14 85.5 112 48.2
Manes.07G111004 Manihot esculenta HOM05D004041 ORTHO05D004564 9.9e-14 82.8 106 42.5
Cfa024514 Carpinus fangiana HOM05D004041 ORTHO05D004564 6.4e-13 80.1 152 36.8
Zm00001eb204760 Zea mays HOM05D004041 ORTHO05D004564 4.2e-12 77.4 115 46.1
Cre09.g409200 Chlamydomonas reinhardtii HOM05D004041 ORTHO05D004564 5.4e-12 77.0 172 35.5
TPR.G14045 Trifolium pratense HOM05D004041 ORTHO05D004564 1.3e-10 72.4 53 67.9
Zm00001eb357810 Zea mays HOM05D004041 ORTHO05D004564 1.7e-10 72.0 98 41.8
TPR.G10966 Trifolium pratense HOM05D004041 ORTHO05D004564 8.7e-10 69.7 55 67.3
Dinv19111 Davidia involucrata HOM05D004041 ORTHO05D004564 1.5e-09 68.9 54 70.4
Gorai.010G211700 Gossypium raimondii HOM05D004041 ORTHO05D004564 1.5e-09 68.9 145 37.9
SGA_v2.0_scaffold7G03771 Striga asiatica HOM05D004041 ORTHO05D004564 1.6e-08 65.5 68 51.5


User provided reference genes

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