Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00685 Brassica carinata HOM05D002943 ORTHO05D002685 3.7e-52 209.5 318 100.0
CARHR158730 Cardamine hirsuta HOM05D002943 ORTHO05D002685 1.5e-37 161.0 317 87.4
Sp5g12420 Schrenkiella parvula HOM05D002943 ORTHO05D002685 2.6e-37 160.2 317 90.9
Thhalv10010551m.g Eutrema salsugineum HOM05D002943 ORTHO05D002685 1.3e-36 157.9 317 88.0
BraA06t25785Z Brassica rapa HOM05D002943 ORTHO05D002685 5.4e-35 152.5 318 89.6
C03p65420 Brassica napus HOM05D002943 ORTHO05D002685 4.5e-34 149.4 318 88.4
BolC3t18794H Brassica oleracea HOM05D002943 ORTHO05D002685 4.5e-34 149.4 318 88.4
AT3G49660 Arabidopsis thaliana HOM05D002943 ORTHO05D002685 7.7e-34 148.7 317 87.7
Carub.0005s1601 Capsella rubella HOM05D002943 ORTHO05D002685 2.9e-33 146.7 317 85.2
BcaC01g02426 Brassica carinata HOM05D002943 ORTHO05D002685 5.0e-33 146.0 318 88.1
Aa31LG4G18140 Aethionema arabicum HOM05D002943 ORTHO05D002685 6.6e-33 145.6 317 88.3
A06p28410 Brassica napus HOM05D002943 ORTHO05D002685 6.6e-33 145.6 318 89.0
AL5G29510 Arabidopsis lyrata HOM05D002943 ORTHO05D002685 1.6e-31 141.0 317 87.4
THA.LOC104798430 Tarenaya hassleriana HOM05D002943 ORTHO05D002685 1.6e-31 141.0 317 83.6
Carub.0008s2659 Capsella rubella HOM05D002943 ORTHO05D002685 1.8e-27 127.5 318 87.1
Lj4g0007346 Lotus japonicus HOM05D002943 ORTHO05D002685 3.6e-23 113.2 313 84.0
Manes.12G119800 Manihot esculenta HOM05D002943 ORTHO05D002685 1.4e-22 111.3 314 84.1
arahy.Tifrunner.gnm1.ann1.RFJS66 Arachis hypogaea HOM05D002943 ORTHO05D002685 2.3e-22 110.5 316 74.4
CiPaw.07G041100 Carya illinoinensis HOM05D002943 ORTHO05D002685 3.1e-22 110.2 315 83.2
Ca_14440_v3 Cicer arietinum L. HOM05D002943 ORTHO05D002685 5.2e-22 109.4 315 74.0
Thecc.01G081600 Theobroma cacao HOM05D002943 ORTHO05D002685 5.2e-22 109.4 308 81.2
arahy.Tifrunner.gnm1.ann1.DT5KC6 Arachis hypogaea HOM05D002943 ORTHO05D002685 6.8e-22 109.0 316 73.4
arahy.Tifrunner.gnm1.ann1.MJC5Q8 Arachis hypogaea HOM05D002943 ORTHO05D002685 6.8e-22 109.0 316 73.4
Medtr4g119620 Medicago truncatula HOM05D002943 ORTHO05D002685 8.9e-22 108.6 325 72.6
COL.COLO4_11661 Corchorus olitorius HOM05D002943 ORTHO05D002685 1.2e-21 108.2 308 84.1
Haze_03949 Corylus avellana HOM05D002943 ORTHO05D002685 1.2e-21 108.2 312 81.7
Gohir.D11G212900 Gossypium hirsutum HOM05D002943 ORTHO05D002685 2.0e-21 107.5 313 83.7
Gorai.007G228800 Gossypium raimondii HOM05D002943 ORTHO05D002685 2.0e-21 107.5 313 83.7
VMungo1215G0795 Vigna mungo HOM05D002943 ORTHO05D002685 2.6e-21 107.1 320 72.8
Phvul.003G104000 Phaseolus vulgaris HOM05D002943 ORTHO05D002685 3.4e-21 106.7 321 73.2
Gohir.A11G210200 Gossypium hirsutum HOM05D002943 ORTHO05D002685 4.4e-21 106.3 313 83.4
Psat0s2006g0120 Pisum sativum HOM05D002943 ORTHO05D002685 4.4e-21 106.3 322 69.6
Cfa006809 Carpinus fangiana HOM05D002943 ORTHO05D002685 5.8e-21 105.9 312 83.7
TPR.G3207 Trifolium pratense HOM05D002943 ORTHO05D002685 9.8e-21 105.1 325 72.3
ClCG01G018070 Citrullus lanatus HOM05D002943 ORTHO05D002685 1.3e-20 104.8 314 82.8
Lalb_Chr07g0177661 Lupinus albus HOM05D002943 ORTHO05D002685 1.3e-20 104.8 315 73.7
Lalb_Chr13g0303681 Lupinus albus HOM05D002943 ORTHO05D002685 1.3e-20 104.8 315 71.7
Sabra07G0007300 Salix brachista HOM05D002943 ORTHO05D002685 1.7e-20 104.4 317 82.6
Cpa.g.sc129.34 Carica papaya HOM05D002943 ORTHO05D002685 2.2e-20 104.0 329 72.0
Potri.007G009500 Populus trichocarpa HOM05D002943 ORTHO05D002685 2.2e-20 104.0 317 82.0
CsaV3_6G044600 Cucumis sativus L. HOM05D002943 ORTHO05D002685 4.9e-20 102.8 313 82.7
Duzib147G1423 Durio zibethinus HOM05D002943 ORTHO05D002685 1.4e-19 101.3 308 82.1
Glyma.07G248900 Glycine max HOM05D002943 ORTHO05D002685 1.4e-19 101.3 309 73.8
TWI74G1409 Tripterygium wilfordii HOM05D002943 ORTHO05D002685 1.9e-19 100.9 313 82.1
Duzib187G0476 Durio zibethinus HOM05D002943 ORTHO05D002685 3.2e-19 100.1 318 81.8
RcHm_v2.0_Chr2g0109631 Rosa chinensis HOM05D002943 ORTHO05D002685 9.2e-19 98.6 315 73.3
Glyma.17G025400 Glycine max HOM05D002943 ORTHO05D002685 1.6e-18 97.8 309 73.5
CANSAT01G2837 Cannabis sativa HOM05D002943 ORTHO05D002685 7.8e-18 95.5 312 82.7
SHI12121 Sapria himalayana HOM05D002943 ORTHO05D002685 7.8e-18 95.5 311 80.4
TWI53G1603 Tripterygium wilfordii HOM05D002943 ORTHO05D002685 7.8e-18 95.5 312 80.8
MD16G1282400 Malus domestica HOM05D002943 ORTHO05D002685 1.0e-17 95.1 316 82.0
Ciclev10026097m.g Citrus clementina HOM05D002943 ORTHO05D002685 1.3e-17 94.7 312 83.0
MD01G1047000 Malus domestica HOM05D002943 ORTHO05D002685 1.7e-17 94.4 316 82.0
CARHR279680 Cardamine hirsuta HOM05D002943 ORTHO05D002685 3.0e-17 93.6 101 81.2
Prupe.6G211800 Prunus persica HOM05D002943 ORTHO05D002685 3.0e-17 93.6 318 71.7
Sc09g0001310 Simmondsia chinensis HOM05D002943 ORTHO05D002685 1.1e-16 91.7 311 80.1
GSVIVG01003702001 Vitis vinifera HOM05D002943 ORTHO05D002685 1.5e-16 91.3 315 81.6
AL8G43350 Arabidopsis lyrata HOM05D000117 ORTHO05D000070 1.9e-16 90.9 111 73.9
AL8G43360 Arabidopsis lyrata HOM05D001456 ORTHO05D013730 1.9e-16 90.9 111 73.9
FvH4_1g18760 Fragaria vesca HOM05D002943 ORTHO05D002685 1.9e-16 90.9 320 80.6
FAN19G1191 Fragaria x ananassa HOM05D002943 ORTHO05D002685 1.9e-16 90.9 320 80.6
AUR62000261 Chenopodium quinoa HOM05D002943 ORTHO05D002685 3.3e-16 90.1 310 67.1
PGR031G0631 Punica granatum HOM05D002943 ORTHO05D002685 3.3e-16 90.1 312 81.1
Aqoxy5G01866 Aquilegia oxysepala HOM05D002943 ORTHO05D002685 5.6e-16 89.4 319 79.6
Potri.005G148500 Populus trichocarpa HOM05D002943 ORTHO05D002685 5.6e-16 89.4 315 82.5
SalBow3G3920 Salvia bowleyana HOM05D002943 ORTHO05D002685 7.3e-16 89.0 312 76.9
Sed0027180 Sechium edule HOM05D002943 ORTHO05D002685 2.1e-15 87.4 311 80.4
SGA_v2.0_scaffold121G33104 Striga asiatica HOM05D002943 ORTHO05D002685 2.8e-15 87.0 312 75.3
FAN23G1457 Fragaria x ananassa HOM05D002943 ORTHO05D002685 3.6e-15 86.7 320 80.6
FAN28G1172 Fragaria x ananassa HOM05D002943 ORTHO05D002685 3.6e-15 86.7 320 80.6
Ah.06g195170 Amaranthus hybridus HOM05D002943 ORTHO05D002685 1.4e-14 84.7 313 76.0
Migut.H00305 Erythranthe guttata HOM05D002943 ORTHO05D002685 2.3e-14 84.0 309 82.2
EL10Ac4g10037 Beta vulgaris HOM05D002943 ORTHO05D002685 1.2e-13 81.6 314 77.7
Hund07388 Selenicereus undatus HOM05D002943 ORTHO05D002685 9.8e-13 78.6 308 79.5
AUR62006609 Chenopodium quinoa HOM05D002943 ORTHO05D002685 2.2e-12 77.4 310 59.4
QL06p037843 Quercus lobata HOM05D002943 ORTHO05D002685 3.7e-12 76.6 337 56.7
Rhsim10G0085400 Rhododendron simsii HOM05D002943 ORTHO05D002685 4.9e-12 76.3 304 77.6
Psat0s2006g0160 Pisum sativum HOM05D002943 ORTHO05D002685 6.4e-12 75.9 105 66.7
Oeu025000.1 Olea europaea HOM05D002943 ORTHO05D002685 1.2e-10 71.6 312 78.8
MBI16_g14668_MAGBIO Magnolia biondii HOM05D002943 ORTHO05D002685 2.7e-10 70.5 307 77.9
Atru.chr3.1120 Acer truncatum HOM05D002943 ORTHO05D002685 7.8e-10 68.9 127 85.8
Dinv36997 Davidia involucrata HOM05D002943 ORTHO05D002685 7.8e-10 68.9 311 80.1
HanXRQChr14g0447041 Helianthus annuus HOM05D002943 ORTHO05D002685 7.8e-10 68.9 126 86.5
Lsat_1_v5_gn_2_81981 Lactuca sativa HOM05D002943 ORTHO05D002685 3.9e-09 66.6 317 78.5
Eucgr.H02400 Eucalyptus grandis HOM05D002943 ORTHO05D002685 1.1e-08 65.1 317 77.9
Hma1.2p1_0996F.1_g245920 Hydrangea macrophylla HOM05D002943 ORTHO05D002685 1.1e-08 65.1 125 86.4
Cc07_g07680 Coffea canephora HOM05D002943 ORTHO05D002685 1.5e-08 64.7 318 78.0
ECA238G4010 Erigeron canadensis HOM05D002943 ORTHO05D002685 1.9e-08 64.3 125 84.0
Nitab4.5_0000093g0160 Nicotiana tabacum HOM05D002943 ORTHO05D002685 1.9e-08 64.3 310 79.4
Nitab4.5_0000396g0220 Nicotiana tabacum HOM05D002943 ORTHO05D002685 2.5e-08 63.9 310 79.4
Oeu054736.1 Olea europaea HOM05D002943 ORTHO05D002685 3.3e-08 63.5 82 39.0
PSO541G4758 Papaver somniferum HOM05D002943 ORTHO05D002685 3.3e-08 63.5 127 84.3
PSO675G4958 Papaver somniferum HOM05D002943 ORTHO05D002685 3.3e-08 63.5 127 84.3
Dinv26988 Davidia involucrata HOM05D002943 ORTHO05D002685 7.3e-08 62.4 311 77.8
Oeu012607.1 Olea europaea HOM05D002943 ORTHO05D002685 7.3e-08 62.4 125 82.4
Actinidia11939 Actinidia chinensis HOM05D002943 ORTHO05D002685 9.5e-08 62.0 304 48.0
Lj4A173G12 Lonicera japonica HOM05D002943 ORTHO05D002685 9.5e-08 62.0 125 84.8
Nn1g05949 Nelumbo nucifera HOM05D002943 ORTHO05D002685 9.5e-08 62.0 126 84.1
TAR376G1143 Trochodendron aralioides HOM05D002943 ORTHO05D002685 1.2e-07 61.6 127 83.5
TAR628G0306 Trochodendron aralioides HOM05D002943 ORTHO05D002685 1.2e-07 61.6 127 83.5
Actinidia36393 Actinidia chinensis HOM05D002943 ORTHO05D002685 2.1e-07 60.8 125 84.8
Lj2C426T10 Lonicera japonica HOM05D002943 ORTHO05D002685 2.8e-07 60.5 84 39.3
vmacro05467 Vaccinium macrocarpon HOM05D002943 ORTHO05D002685 3.6e-07 60.1 81 38.3
Pp3c10_4790 Physcomitrium patens HOM05D009278 ORTHO05D002685 4.7e-07 59.7 122 83.6
unitig_0.g486 Utricularia gibba HOM05D002943 ORTHO05D002685 4.7e-07 59.7 102 62.7
Nn1g05606 Nelumbo nucifera HOM05D002943 ORTHO05D002685 8.1e-07 58.9 82 36.6
Pp3c14_5700 Physcomitrium patens HOM05D009278 ORTHO05D002685 1.1e-06 58.5 122 83.6
Zm00001eb325000 Zea mays HOM05D002943 ORTHO05D002685 2.3e-06 57.4 81 38.3
Zm00001eb325010 Zea mays HOM05D002943 ORTHO05D002685 2.3e-06 57.4 81 38.3
CSS0032407 Camellia sinensis var. sinensis HOM05D002943 ORTHO05D002685 3.1e-06 57.0 83 34.9
ATR0332G110 Amborella trichopoda HOM05D002943 ORTHO05D002685 4.0e-06 56.6 125 82.4
CDE06G1770 Ceratophyllum demersum HOM05D002943 ORTHO05D002685 4.0e-06 56.6 126 81.0
Ciclev10033651m.g Citrus clementina HOM05D002943 ORTHO05D002685 5.2e-06 56.2 104 39.4
Zm00001eb055840 Zea mays HOM05D002943 ORTHO05D002685 5.2e-06 56.2 322 70.8
Mapoly0035s0097 Marchantia polymorpha HOM05D002943 ORTHO05D002685 6.8e-06 55.8 124 83.9
CDE04G2187 Ceratophyllum demersum HOM05D002943 ORTHO05D002685 8.9e-06 55.5 126 81.0
TWI59G0374 Tripterygium wilfordii HOM05D002943 ORTHO05D002685 8.9e-06 55.5 81 37.0
Zm00001eb270960 Zea mays HOM05D005612 ORTHO05D002685 8.9e-06 55.5 83 32.5


User provided reference genes

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