Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00676 Brassica carinata HOM05D004527 ORTHO05D005335 4.0e-95 352.1 277 100.0
BolC8t50091H Brassica oleracea HOM05D004527 ORTHO05D005335 7.3e-89 331.3 277 96.0
BcaC07g39438 Brassica carinata HOM05D004527 ORTHO05D005335 2.1e-88 329.7 277 95.7
C08p24770 Brassica napus HOM05D004527 ORTHO05D005335 2.1e-88 329.7 277 95.7
Sp5g12330 Schrenkiella parvula HOM05D004527 ORTHO05D005335 1.8e-87 326.6 278 95.0
Thhalv10010947m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 8.4e-85 317.8 278 92.8
AL5G29710 Arabidopsis lyrata HOM05D004527 ORTHO05D005335 1.3e-82 310.5 279 91.4
BcaB05g23149 Brassica carinata HOM05D004527 ORTHO05D005335 3.9e-82 308.9 279 93.2
A01p24580 Brassica napus HOM05D004527 ORTHO05D005335 5.1e-82 308.5 280 92.9
BraA01t02368Z Brassica rapa HOM05D004527 ORTHO05D005335 5.1e-82 308.5 280 92.9
Carub.0005s1611 Capsella rubella HOM05D004527 ORTHO05D005335 6.6e-82 308.1 283 90.5
BcaC09g49968 Brassica carinata HOM05D004527 ORTHO05D005335 1.5e-81 307.0 280 92.5
BolC1t03001H Brassica oleracea HOM05D004527 ORTHO05D005335 1.5e-81 307.0 280 92.5
C01p30660 Brassica napus HOM05D004527 ORTHO05D005335 3.3e-81 305.8 280 91.8
AT3G49750 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 5.6e-81 305.1 278 91.0
CARHR158830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 3.8e-77 292.4 267 91.4
Aa31LG4G18240 Aethionema arabicum HOM05D004527 ORTHO05D005335 1.2e-75 287.3 277 88.4
Aa31LG1G16250 Aethionema arabicum HOM05D004527 ORTHO05D005335 4.0e-71 272.3 278 85.3
THA.LOC104827740 Tarenaya hassleriana HOM05D004527 ORTHO05D005335 1.0e-69 267.7 278 84.2
Sp2g28920 Schrenkiella parvula HOM05D004527 ORTHO05D005335 2.2e-69 266.5 278 84.2
Carub.0008s2672 Capsella rubella HOM05D004527 ORTHO05D005335 1.9e-68 263.5 279 83.9
CARHR279830 Cardamine hirsuta HOM05D004527 ORTHO05D005335 4.6e-67 258.8 279 81.7
AT5G65830 Arabidopsis thaliana HOM05D004527 ORTHO05D005335 6.7e-66 255.0 281 82.2
Thhalv10005320m.g Eutrema salsugineum HOM05D004527 ORTHO05D005335 6.7e-66 255.0 278 82.4
A09p09200 Brassica napus HOM05D004527 ORTHO05D005335 1.6e-64 250.4 277 81.6
C09p10730 Brassica napus HOM05D004527 ORTHO05D005335 2.8e-64 249.6 277 81.6
BcaC04g23245 Brassica carinata HOM05D004527 ORTHO05D005335 3.7e-64 249.2 277 81.6
BolC9t53969H Brassica oleracea HOM05D004527 ORTHO05D005335 3.7e-64 249.2 277 81.6
BraA09t36572Z Brassica rapa HOM05D004527 ORTHO05D005335 1.1e-63 247.7 277 81.2
COL.COLO4_11620 Corchorus olitorius HOM05D004527 ORTHO05D005335 7.6e-62 241.5 267 81.6
BcaB04g20032 Brassica carinata HOM05D004527 ORTHO05D005335 1.3e-61 240.7 277 79.8
Cpa.g.sc129.69 Carica papaya HOM05D004527 ORTHO05D005335 2.5e-60 236.5 272 78.7
Duzib187G1832 Durio zibethinus HOM05D004527 ORTHO05D005335 4.2e-60 235.7 267 81.3
Gohir.A02G149500 Gossypium hirsutum HOM05D004527 ORTHO05D005335 9.3e-60 234.6 270 81.5
Duzib147G0417 Durio zibethinus HOM05D004527 ORTHO05D005335 1.2e-59 234.2 267 72.3
Gohir.D03G030300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.7e-59 233.0 268 81.7
Gorai.003G032400 Gossypium raimondii HOM05D004527 ORTHO05D005335 2.7e-59 233.0 268 81.7
Duzib264G0041 Durio zibethinus HOM05D004527 ORTHO05D005335 7.9e-59 231.5 267 80.9
Gohir.A12G080600 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.3e-58 230.7 267 79.8
Gohir.D12G077300 Gossypium hirsutum HOM05D004527 ORTHO05D005335 2.3e-58 229.9 267 80.1
Gorai.008G086100 Gossypium raimondii HOM05D004527 ORTHO05D005335 2.3e-58 229.9 267 80.1
Thecc.01G076900 Theobroma cacao HOM05D004527 ORTHO05D005335 1.9e-57 226.9 267 79.8
Sabra14G0006900 Salix brachista HOM05D004527 ORTHO05D005335 3.3e-57 226.1 266 78.9
CANSAT25G2808 Cannabis sativa HOM05D004527 ORTHO05D005335 9.7e-57 224.6 269 77.3
TAR381G1318 Trochodendron aralioides HOM05D004527 ORTHO05D005335 1.3e-56 224.2 253 81.8
RcHm_v2.0_Chr2g0108871 Rosa chinensis HOM05D004527 ORTHO05D005335 2.2e-56 223.4 275 76.7
Ciclev10026270m.g Citrus clementina HOM05D004527 ORTHO05D005335 2.8e-56 223.0 255 82.4
TAR625G0245 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.8e-56 223.0 269 79.2
Potri.014G012300 Populus trichocarpa HOM05D004527 ORTHO05D005335 4.8e-56 222.2 266 78.6
FvH4_1g18280 Fragaria vesca HOM05D004527 ORTHO05D005335 6.3e-56 221.9 268 77.6
FAN19G0418 Fragaria x ananassa HOM05D004527 ORTHO05D005335 6.3e-56 221.9 268 77.6
FAN23G2001 Fragaria x ananassa HOM05D004527 ORTHO05D005335 6.3e-56 221.9 255 80.4
TWI74G0505 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 6.3e-56 221.9 272 78.7
CiPaw.01G001600 Carya illinoinensis HOM05D004527 ORTHO05D005335 8.2e-56 221.5 270 77.8
MD15G1301200 Malus domestica HOM05D004527 ORTHO05D005335 8.2e-56 221.5 267 76.8
FAN26G2218 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.8e-55 220.3 268 76.9
SGA_v2.0_scaffold269G46278 Striga asiatica HOM05D004527 ORTHO05D005335 2.4e-55 219.9 273 77.3
Manes.12G117900 Manihot esculenta HOM05D004527 ORTHO05D005335 3.1e-55 219.5 265 78.5
Gohir.D11G211000 Gossypium hirsutum HOM05D004527 ORTHO05D005335 4.1e-55 219.2 267 77.5
Prupe.6G216300 Prunus persica HOM05D004527 ORTHO05D005335 6.9e-55 218.4 255 79.2
GSVIVG01007390001 Vitis vinifera HOM05D004527 ORTHO05D005335 6.9e-55 218.4 261 79.3
Gorai.007G226700 Gossypium raimondii HOM05D004527 ORTHO05D005335 1.2e-54 217.6 267 77.5
Potri.007G007500 Populus trichocarpa HOM05D004527 ORTHO05D005335 1.2e-54 217.6 265 77.0
QL06p038806 Quercus lobata HOM05D004527 ORTHO05D005335 2.0e-54 216.9 269 78.1
Sabra07G0005800 Salix brachista HOM05D004527 ORTHO05D005335 2.0e-54 216.9 266 75.9
TAR628G0079 Trochodendron aralioides HOM05D004527 ORTHO05D005335 2.0e-54 216.9 268 77.6
Nn5g30677 Nelumbo nucifera HOM05D004527 ORTHO05D005335 2.6e-54 216.5 253 81.4
SalBow3G2616 Salvia bowleyana HOM05D004527 ORTHO05D005335 3.4e-54 216.1 252 79.4
MD02G1190100 Malus domestica HOM05D004527 ORTHO05D005335 7.7e-54 214.9 267 75.3
Oeu034346.1 Olea europaea HOM05D004527 ORTHO05D005335 3.8e-53 212.6 267 75.3
Aqoxy6G02924 Aquilegia oxysepala HOM05D004527 ORTHO05D005335 1.1e-52 211.1 265 75.5
PGR004G2554 Punica granatum HOM05D004527 ORTHO05D005335 1.1e-52 211.1 268 77.6
MELO3C007658.2 Cucumis melo HOM05D004527 ORTHO05D005335 4.2e-52 209.1 254 78.3
CsaV3_6G044360 Cucumis sativus L. HOM05D004527 ORTHO05D005335 4.2e-52 209.1 254 78.3
PGSC0003DMG400043061 Solanum tuberosum HOM05D004527 ORTHO05D005335 5.5e-52 208.8 267 76.4
Nitab4.5_0000142g0410 Nicotiana tabacum HOM05D004527 ORTHO05D005335 7.2e-52 208.4 266 75.9
ClCG01G017820 Citrullus lanatus HOM05D004527 ORTHO05D005335 9.4e-52 208.0 267 75.3
Migut.L00429 Erythranthe guttata HOM05D004527 ORTHO05D005335 1.2e-51 207.6 253 79.8
Lj4P166T18 Lonicera japonica HOM05D004527 ORTHO05D005335 2.1e-51 206.8 268 77.6
Nitab4.5_0000776g0070 Nicotiana tabacum HOM05D004527 ORTHO05D005335 2.1e-51 206.8 266 75.6
Hma1.2p1_1139F.1_g260820 Hydrangea macrophylla HOM05D004527 ORTHO05D005335 2.7e-51 206.5 267 74.5
PSO170G0158 Papaver somniferum HOM05D004527 ORTHO05D005335 2.7e-51 206.5 269 71.4
MSTRG.23652 Avicennia marina HOM05D004527 ORTHO05D005335 3.6e-51 206.1 252 77.8
Cc07_g07400 Coffea canephora HOM05D004527 ORTHO05D005335 3.6e-51 206.1 268 75.0
Migut.H00322 Erythranthe guttata HOM05D004527 ORTHO05D005335 3.6e-51 206.1 250 78.0
Solyc02g092040.1 Solanum lycopersicum HOM05D004527 ORTHO05D005335 4.6e-51 205.7 267 75.3
Sopen02g036620 Solanum pennellii HOM05D004527 ORTHO05D005335 4.6e-51 205.7 267 75.3
DCAR_025824 Daucus carota HOM05D004527 ORTHO05D005335 6.1e-51 205.3 274 74.5
CSS0027520 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 7.9e-51 204.9 271 74.5
CSS0031628 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 7.9e-51 204.9 271 74.5
Oeu013345.1 Olea europaea HOM05D004527 ORTHO05D005335 1.4e-50 204.1 267 75.7
PSO017G0995 Papaver somniferum HOM05D004527 ORTHO05D005335 1.4e-50 204.1 269 68.8
Sed0004587 Sechium edule HOM05D004527 ORTHO05D005335 1.4e-50 204.1 258 76.4
MSTRG.15342 Avicennia marina HOM05D004527 ORTHO05D005335 3.9e-50 202.6 252 77.4
MSTRG.2802 Avicennia marina HOM05D004527 ORTHO05D005335 8.8e-50 201.4 268 71.6
CAN.G1343.10 Capsicum annuum HOM05D004527 ORTHO05D005335 8.8e-50 201.4 250 77.2
Lj7C113T0 Lonicera japonica HOM05D004527 ORTHO05D005335 1.1e-49 201.1 267 75.3
BcaC04g23244 Brassica carinata HOM05D004527 ORTHO05D005335 2.6e-49 199.9 277 61.7
Lj2g0022505 Lotus japonicus HOM05D004527 ORTHO05D005335 3.3e-49 199.5 267 74.9
arahy.Tifrunner.gnm1.ann1.1FYE2A Arachis hypogaea HOM05D004527 ORTHO05D005335 5.7e-49 198.7 265 72.5
arahy.Tifrunner.gnm1.ann1.SGKS0T Arachis hypogaea HOM05D004527 ORTHO05D005335 5.7e-49 198.7 265 72.5
Ca_24669_v3 Cicer arietinum L. HOM05D004527 ORTHO05D005335 5.7e-49 198.7 251 78.1
HanXRQChr14g0447741 Helianthus annuus HOM05D004527 ORTHO05D005335 5.7e-49 198.7 268 75.0
Glyma.01G196000 Glycine max HOM05D004527 ORTHO05D005335 1.7e-48 197.2 251 74.5
Glyma.11G045700 Glycine max HOM05D004527 ORTHO05D005335 1.7e-48 197.2 251 78.1
HPP92_020623 Vanilla planifolia HOM05D004527 ORTHO05D005335 4.8e-48 195.7 277 73.3
TWI77G0125 Tripterygium wilfordii HOM05D004527 ORTHO05D005335 6.3e-48 195.3 230 84.8
vmacro23340 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 6.3e-48 195.3 271 47.6
Lalb_Chr16g0379001 Lupinus albus HOM05D004527 ORTHO05D005335 1.1e-47 194.5 267 73.4
Psat0s1639g0080 Pisum sativum HOM05D004527 ORTHO05D005335 1.4e-47 194.1 268 74.3
VMungo1215G0719 Vigna mungo HOM05D004527 ORTHO05D005335 1.4e-47 194.1 251 71.7
Phvul.002G009000 Phaseolus vulgaris HOM05D004527 ORTHO05D005335 1.8e-47 193.7 251 77.3
MSTRG.3484 Avicennia marina HOM05D004527 ORTHO05D005335 3.1e-47 193.0 251 75.7
TPR.G9333 Trifolium pratense HOM05D004527 ORTHO05D005335 6.9e-47 191.8 269 73.6
Eucgr.I00670 Eucalyptus grandis HOM05D004527 ORTHO05D005335 1.2e-46 191.0 259 76.8
AUR62007543 Chenopodium quinoa HOM05D004527 ORTHO05D005335 4.5e-46 189.1 254 75.2
Peaxi162Scf00096g00187 Petunia axillaris HOM05D004527 ORTHO05D005335 4.5e-46 189.1 244 77.9
Sc03g0002710 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.0e-45 188.0 265 73.6
Lsat_1_v5_gn_4_158441 Lactuca sativa HOM05D004527 ORTHO05D005335 2.2e-45 186.8 254 77.2
Lsat_1_v5_gn_3_85800 Lactuca sativa HOM05D004527 ORTHO05D005335 8.5e-45 184.9 274 73.4
EL10Ac6g15591 Beta vulgaris HOM05D004527 ORTHO05D005335 1.4e-44 184.1 266 72.9
Actinidia11961 Actinidia chinensis HOM05D004527 ORTHO05D005335 5.5e-44 182.2 273 72.9
Medtr5g015050 Medicago truncatula HOM05D004527 ORTHO05D005335 1.6e-43 180.6 266 72.9
Rhsim10G0094600 Rhododendron simsii HOM05D004527 ORTHO05D005335 7.9e-43 178.3 270 69.6
SEGI_31883 Sequoiadendron giganteum HOM05D004527 ORTHO05D005335 7.9e-43 178.3 252 67.1
Dinv26963 Davidia involucrata HOM05D004527 ORTHO05D005335 5.2e-42 175.6 243 76.5
MBI16_g04107_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 5.2e-42 175.6 269 72.1
HanXRQChr04g0112451 Helianthus annuus HOM05D004527 ORTHO05D005335 6.7e-42 175.3 254 70.9
ATR0739G175 Amborella trichopoda HOM05D004527 ORTHO05D005335 8.8e-42 174.9 254 68.9
Gohir.A11G211900 Gossypium hirsutum HOM05D004527 ORTHO05D005335 1.1e-41 174.5 277 39.4
Lsat_1_v5_gn_2_80060 Lactuca sativa HOM05D004527 ORTHO05D005335 1.1e-41 174.5 230 80.9
Os09g0131200 Oryza sativa ssp. japonica HOM05D004527 ORTHO05D005335 2.6e-41 173.3 256 73.4
Zm00001eb192660 Zea mays HOM05D004527 ORTHO05D005335 7.4e-41 171.8 260 70.8
HanXRQChr11g0323561 Helianthus annuus HOM05D004527 ORTHO05D005335 1.7e-40 170.6 278 70.9
CDE01G0566 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 2.2e-40 170.2 252 72.2
Zm00001eb257530 Zea mays HOM05D004527 ORTHO05D005335 2.2e-40 170.2 261 70.5
Actinidia36420 Actinidia chinensis HOM05D004527 ORTHO05D005335 6.3e-40 168.7 237 78.9
CSS0048095 Camellia sinensis var. sinensis HOM05D004527 ORTHO05D005335 2.6e-38 163.3 231 78.8
Dinv23049 Davidia involucrata HOM05D004527 ORTHO05D005335 3.5e-38 162.9 231 78.4
FAN28G1986 Fragaria x ananassa HOM05D004527 ORTHO05D005335 1.3e-37 161.0 230 77.4
Atru.chr3.1065 Acer truncatum HOM05D004527 ORTHO05D005335 5.2e-34 149.1 207 81.2
SHI12014 Sapria himalayana HOM05D000105 ORTHO05D000023 4.8e-32 142.5 251 70.1
Manes.13G108600 Manihot esculenta HOM05D004527 ORTHO05D005335 7.0e-31 138.7 209 78.0
Nn6g34534 Nelumbo nucifera HOM05D004527 ORTHO05D005335 2.9e-29 133.3 79 77.2
Sc03g0002680 Simmondsia chinensis HOM05D004527 ORTHO05D005335 1.0e-26 124.8 213 75.6
Haze_15019 Corylus avellana HOM05D004527 ORTHO05D005335 1.4e-26 124.4 86 72.1
vmacro04599 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 8.8e-26 121.7 95 65.3
AUR62004034 Chenopodium quinoa HOM05D004527 ORTHO05D005335 1.7e-24 117.5 87 67.8
Pp3c11_20500 Physcomitrium patens HOM05D004527 ORTHO05D005335 4.8e-24 115.9 272 61.8
Mapoly0037s0017 Marchantia polymorpha HOM05D004527 ORTHO05D005335 6.3e-24 115.5 253 60.9
SMO351G0231 Selaginella moellendorffii HOM05D004527 ORTHO05D005335 7.0e-23 112.1 251 53.4
Pp3c7_5330 Physcomitrium patens HOM05D004527 ORTHO05D005335 2.7e-22 110.2 261 63.6
MBI16_g37622_MAGBIO Magnolia biondii HOM05D004527 ORTHO05D005335 3.2e-20 103.2 82 58.5
vmacro04600 Vaccinium macrocarpon HOM05D004527 ORTHO05D005335 3.0e-18 96.7 83 57.8
CDE12G0864 Ceratophyllum demersum HOM05D004527 ORTHO05D005335 5.7e-17 92.4 86 57.0
BcaB04g20035 Brassica carinata HOM05D004527 ORTHO05D005335 1.6e-11 74.3 78 56.4
SalBow1G8006 Salvia bowleyana HOM05D004527 ORTHO05D005335 3.0e-10 70.1 58 60.3
ATR0730G160 Amborella trichopoda HOM05D004527 ORTHO05D005335 4.1e-07 59.7 53 49.1
RcHm_v2.0_Chr2g0084611 Rosa chinensis HOM05D000094 ORTHO05D001056 5.4e-07 59.3 77 35.1
AagrBONN_evm.TU.Sc2ySwM_228.2437 Anthoceros agrestis HOM05D004527 ORTHO05D005335 2.0e-06 57.4 234 58.1
Manes.01G019000 Manihot esculenta HOM05D000094 ORTHO05D001056 4.6e-06 56.2 75 38.7


User provided reference genes

Program Settings