Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00663 Brassica carinata HOM05D000249 ORTHO05D014430 1.9e-98 362.5 176 100.0
BcaB01g00671 Brassica carinata HOM05D000249 ORTHO05D000206 2.2e-54 216.1 178 63.5
BcaB01g00672 Brassica carinata HOM05D000249 ORTHO05D000206 4.3e-50 201.8 171 61.4
A09p42960 Brassica napus HOM05D000249 ORTHO05D000206 9.5e-50 200.7 179 60.9
C08p24860 Brassica napus HOM05D000249 ORTHO05D027859 9.5e-50 200.7 178 62.9
BraA09t39764Z Brassica rapa HOM05D000249 ORTHO05D000206 9.5e-50 200.7 179 60.9
BcaB01g00669 Brassica carinata HOM05D000249 ORTHO05D000206 1.6e-49 199.9 179 59.8
BcaB01g00661 Brassica carinata HOM05D000249 ORTHO05D000206 2.8e-49 199.1 179 60.3
BraA07t30572Z Brassica rapa HOM05D000249 ORTHO05D000206 6.2e-49 198.0 179 58.1
A07p29340 Brassica napus HOM05D000249 ORTHO05D000206 1.4e-48 196.8 177 57.6
A09p42950 Brassica napus HOM05D000249 ORTHO05D000206 1.4e-48 196.8 178 58.4
C08p24840 Brassica napus HOM05D000249 ORTHO05D000206 1.8e-48 196.4 180 60.0
BcaB01g00670 Brassica carinata HOM05D000249 ORTHO05D000206 3.1e-48 195.7 179 59.8
A09p42980 Brassica napus HOM05D000249 ORTHO05D000206 3.1e-48 195.7 179 59.2
BraA09t39766Z Brassica rapa HOM05D000249 ORTHO05D000206 3.1e-48 195.7 179 59.2
BolC8t50100H Brassica oleracea HOM05D000249 ORTHO05D000206 6.8e-48 194.5 180 58.9
BcaB01g00662 Brassica carinata HOM05D000249 ORTHO05D000206 2.9e-46 189.1 184 54.3
BcaB01g00667 Brassica carinata HOM05D000249 ORTHO05D014430 1.9e-45 186.4 175 60.6
A09p42970 Brassica napus HOM05D000249 ORTHO05D014430 1.9e-42 176.4 172 59.3
A09p48400 Brassica napus HOM05D000249 ORTHO05D000206 5.6e-42 174.9 188 52.7
C08p30700 Brassica napus HOM05D000249 ORTHO05D000206 5.6e-42 174.9 185 53.5
BraA09t40292Z Brassica rapa HOM05D000249 ORTHO05D000206 5.6e-42 174.9 188 52.7
BcaC07g39864 Brassica carinata HOM05D000249 ORTHO05D000206 7.3e-42 174.5 185 53.0
BcaB01g00668 Brassica carinata HOM05D000249 ORTHO05D000206 1.6e-41 173.3 174 52.9
BraA09t39765Z Brassica rapa HOM05D000249 ORTHO05D014430 3.6e-41 172.2 170 58.8
BolC8t50686H Brassica oleracea HOM05D000249 ORTHO05D000206 1.1e-40 170.6 185 51.9
A09p42990 Brassica napus HOM05D000249 ORTHO05D014430 7.5e-39 164.5 140 62.9
BraA09t39763Z Brassica rapa HOM05D000249 ORTHO05D000206 2.2e-38 162.9 178 51.7
C06p49890 Brassica napus HOM05D000249 ORTHO05D000206 9.2e-37 157.5 174 50.6
BolC6t40027H Brassica oleracea HOM05D000249 ORTHO05D000206 9.2e-37 157.5 173 50.9
BcaC08g47310 Brassica carinata HOM05D000249 ORTHO05D000206 2.7e-36 156.0 174 51.7
BcaC07g39445 Brassica carinata HOM05D000249 ORTHO05D014430 1.3e-35 153.7 139 59.7
A09p43010 Brassica napus HOM05D000249 ORTHO05D000206 9.2e-29 131.0 99 66.7
BraA09t39768Z Brassica rapa HOM05D000249 ORTHO05D000206 9.2e-29 131.0 99 66.7
BcaC07g39448 Brassica carinata HOM05D000249 ORTHO05D000206 1.6e-28 130.2 99 66.7
BcaC02g08743 Brassica carinata HOM05D000249 ORTHO05D027180 3.5e-28 129.0 168 42.9
A04p16580 Brassica napus HOM05D000249 ORTHO05D027180 3.3e-26 122.5 166 43.4
BraA04t17293Z Brassica rapa HOM05D000249 ORTHO05D027180 3.3e-26 122.5 166 43.4
C04p53950 Brassica napus HOM05D000088 ORTHO05D002762 1.5e-23 113.6 175 39.4
BolC4t26943H Brassica oleracea HOM05D000249 ORTHO05D019890 2.6e-23 112.8 173 37.6
BcaC02g08473 Brassica carinata HOM05D000249 ORTHO05D019890 3.4e-23 112.5 173 37.6
BcaC02g08476 Brassica carinata HOM05D000249 ORTHO05D019890 5.8e-23 111.7 173 37.6
BolC4t26944H Brassica oleracea HOM05D000249 ORTHO05D019890 7.6e-23 111.3 175 38.9
Carub.0004s0120 Capsella rubella HOM05D000249 ORTHO05D000206 3.8e-22 109.0 168 38.1
BcaC05g28442 Brassica carinata HOM05D000249 ORTHO05D024239 1.1e-21 107.5 172 37.2
BolC5t33246H Brassica oleracea HOM05D000249 ORTHO05D024239 1.1e-21 107.5 172 37.2
BcaB01g00664 Brassica carinata HOM05D003412 ORTHO05D014430 4.2e-21 105.5 163 42.9
C05p45250 Brassica napus HOM05D000249 ORTHO05D024239 4.2e-21 105.5 171 36.8
A04p18630 Brassica napus HOM05D000249 ORTHO05D014430 4.6e-20 102.1 116 43.1
A05p29990 Brassica napus HOM05D000249 ORTHO05D018661 1.7e-19 100.1 171 34.5
BraA05t21843Z Brassica rapa HOM05D000249 ORTHO05D018661 1.7e-19 100.1 171 34.5
AT2G41360 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 2.5e-18 96.3 182 34.1
BcaC07g39444 Brassica carinata HOM05D000249 ORTHO05D014430 2.5e-18 96.3 74 60.8
AL4G39390 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 3.3e-18 95.9 182 33.5
AT2G22060 Arabidopsis thaliana HOM05D000249 ORTHO05D014430 3.3e-18 95.9 155 40.0
BcaC02g08744 Brassica carinata HOM05D000249 ORTHO05D090709 4.3e-18 95.5 165 35.2
BcaC08g47315 Brassica carinata HOM05D000249 ORTHO05D000206 5.6e-18 95.1 102 47.1
BcaB04g20311 Brassica carinata HOM05D000249 ORTHO05D015951 1.4e-16 90.5 171 35.7
BcaC02g09141 Brassica carinata HOM05D000249 ORTHO05D014430 2.4e-16 89.7 87 56.3
Thhalv10000431m.g Eutrema salsugineum HOM05D000249 ORTHO05D014430 5.3e-16 88.6 104 46.2
CARHR113180 Cardamine hirsuta HOM05D000249 ORTHO05D015951 6.9e-16 88.2 172 29.7
BcaC08g47314 Brassica carinata HOM05D000249 ORTHO05D000206 9.0e-16 87.8 149 40.9
BcaC04g24035 Brassica carinata HOM05D000249 ORTHO05D018661 9.9e-15 84.3 156 33.3
BraA09t40943Z Brassica rapa HOM05D000249 ORTHO05D015951 9.9e-15 84.3 176 30.7
A05p29970 Brassica napus HOM05D000249 ORTHO05D024239 1.7e-14 83.6 172 33.7
BraA05t21842Z Brassica rapa HOM05D000249 ORTHO05D024239 1.7e-14 83.6 172 33.7
BolC8t50099H Brassica oleracea HOM05D000249 ORTHO05D014430 6.4e-14 81.6 72 61.1
A09p55410 Brassica napus HOM05D000249 ORTHO05D015951 8.4e-14 81.3 176 30.1
BcaB06g26029 Brassica carinata HOM05D000249 ORTHO05D000206 1.2e-12 77.4 119 37.8
BcaC07g40841 Brassica carinata HOM05D000249 ORTHO05D015951 1.2e-12 77.4 172 30.2
C08p38380 Brassica napus HOM05D000249 ORTHO05D015951 1.2e-12 77.4 172 30.2
BolC8t51411H Brassica oleracea HOM05D000249 ORTHO05D015951 1.2e-12 77.4 172 30.2
BraA04t17474Z Brassica rapa HOM05D000249 ORTHO05D019890 1.2e-12 77.4 95 44.2
AT2G22030 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 2.1e-12 76.6 172 27.9
Thhalv10000440m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 2.1e-12 76.6 167 29.3
BcaB01g02288 Brassica carinata HOM05D000249 ORTHO05D000206 3.5e-12 75.9 115 34.8
BcaB01g02287 Brassica carinata HOM05D000249 ORTHO05D000206 4.6e-12 75.5 116 34.5
Carub.0005s1140 Capsella rubella HOM05D000249 ORTHO05D000206 7.9e-12 74.7 113 36.3
Carub.0005s2732 Capsella rubella HOM05D000249 ORTHO05D000206 3.9e-11 72.4 164 28.7
Thhalv10000680m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 5.1e-11 72.0 110 35.5
BcaB06g28077 Brassica carinata HOM05D000249 ORTHO05D000206 6.7e-11 71.6 115 31.3
A09p00080 Brassica napus HOM05D000249 ORTHO05D000206 6.7e-11 71.6 116 31.0
BraA09t35738Z Brassica rapa HOM05D000249 ORTHO05D000206 6.7e-11 71.6 116 31.0
BolC8t50102H Brassica oleracea HOM05D000249 ORTHO05D027859 1.5e-10 70.5 52 73.1
Sp4g05040 Schrenkiella parvula HOM05D000249 ORTHO05D000206 1.5e-10 70.5 115 33.0
BcaC07g41138 Brassica carinata HOM05D000249 ORTHO05D000206 1.9e-10 70.1 115 31.3
CARHR113160 Cardamine hirsuta HOM05D000249 ORTHO05D000206 1.9e-10 70.1 169 29.0
Thhalv10029372m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 2.5e-10 69.7 175 25.1
BcaC04g24138 Brassica carinata HOM05D000249 ORTHO05D000206 3.3e-10 69.3 113 31.9
C09p00690 Brassica napus HOM05D000249 ORTHO05D000206 3.3e-10 69.3 113 31.9
BolC9t53003H Brassica oleracea HOM05D000249 ORTHO05D000206 3.3e-10 69.3 113 31.9
Thhalv10000664m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 3.3e-10 69.3 172 29.7
Thhalv10018745m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 4.3e-10 68.9 115 32.2
A04p19790 Brassica napus HOM05D000249 ORTHO05D000206 9.6e-10 67.8 115 33.0
A04p19800 Brassica napus HOM05D000249 ORTHO05D000206 9.6e-10 67.8 115 28.7
C05p45220 Brassica napus HOM05D000249 ORTHO05D014430 9.6e-10 67.8 81 39.5
C07p63080 Brassica napus HOM05D000249 ORTHO05D000206 9.6e-10 67.8 161 29.8
BraA08t32686Z Brassica rapa HOM05D000249 ORTHO05D000206 9.6e-10 67.8 115 28.7
BcaB06g27802 Brassica carinata HOM05D000249 ORTHO05D027180 1.6e-09 67.0 97 41.2
BraA04t17569Z Brassica rapa HOM05D000249 ORTHO05D000206 1.6e-09 67.0 115 27.8
Carub.0005s2731 Capsella rubella HOM05D000249 ORTHO05D000206 1.6e-09 67.0 177 28.8
AT4G25710 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 2.1e-09 66.6 156 32.7
BcaC02g08338 Brassica carinata HOM05D000249 ORTHO05D000206 2.1e-09 66.6 115 27.8
BcaC02g08340 Brassica carinata HOM05D000249 ORTHO05D000206 2.1e-09 66.6 115 32.2
A08p06700 Brassica napus HOM05D000249 ORTHO05D000206 2.1e-09 66.6 115 27.8
C04p55530 Brassica napus HOM05D000249 ORTHO05D000206 2.1e-09 66.6 115 32.2
BolC4t27078H Brassica oleracea HOM05D000249 ORTHO05D000206 2.1e-09 66.6 115 32.2
BolC4t27079H Brassica oleracea HOM05D000249 ORTHO05D000206 2.1e-09 66.6 115 27.8
AT2G44700 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 2.8e-09 66.2 115 29.6
C04p55550 Brassica napus HOM05D000249 ORTHO05D000206 2.8e-09 66.2 115 27.8
Carub.0004s0116 Capsella rubella HOM05D000249 ORTHO05D000206 2.8e-09 66.2 178 28.7
AL4G11340 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 3.7e-09 65.9 175 29.7
AL7G11700 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 3.7e-09 65.9 114 31.6
Thhalv10000554m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 3.7e-09 65.9 169 27.8
CARHR113100 Cardamine hirsuta HOM05D000249 ORTHO05D027792 4.8e-09 65.5 175 25.7
CARHR247150 Cardamine hirsuta HOM05D000249 ORTHO05D000206 4.8e-09 65.5 170 30.6
C08p41400 Brassica napus HOM05D000249 ORTHO05D000206 6.2e-09 65.1 115 30.4
BcaC07g41102 Brassica carinata HOM05D000249 ORTHO05D000206 8.1e-09 64.7 117 30.8
C08p41060 Brassica napus HOM05D000249 ORTHO05D000206 8.1e-09 64.7 117 30.8
Carub.0004s2725 Capsella rubella HOM05D000249 ORTHO05D000206 8.1e-09 64.7 111 32.4
BraA09t39256Z Brassica rapa HOM05D000249 ORTHO05D000206 1.1e-08 64.3 111 31.5
A04p19810 Brassica napus HOM05D000249 ORTHO05D000206 1.4e-08 63.9 115 27.8
C05p45260 Brassica napus HOM05D000249 ORTHO05D042351 1.4e-08 63.9 91 42.9
BolC5t33247H Brassica oleracea HOM05D000249 ORTHO05D042351 1.4e-08 63.9 91 42.9
BolC8t51670H Brassica oleracea HOM05D000249 ORTHO05D000206 1.4e-08 63.9 115 30.4
CARHR139910 Cardamine hirsuta HOM05D000249 ORTHO05D000206 1.8e-08 63.5 116 31.9
AL7G11600 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 2.4e-08 63.2 170 26.5
BcaB06g28076 Brassica carinata HOM05D000249 ORTHO05D000206 2.4e-08 63.2 112 28.6
Carub.0008s0879 Capsella rubella HOM05D000249 ORTHO05D000206 2.4e-08 63.2 169 27.8
A09p37460 Brassica napus HOM05D000249 ORTHO05D000206 3.1e-08 62.8 111 30.6
A09p58140 Brassica napus HOM05D000249 ORTHO05D000206 4.0e-08 62.4 115 30.4
C04p42830 Brassica napus HOM05D000249 ORTHO05D000206 4.0e-08 62.4 116 34.5
BolC4t25849H Brassica oleracea HOM05D000249 ORTHO05D000206 4.0e-08 62.4 116 34.5
AT4G39570 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 6.9e-08 61.6 114 32.5
Carub.0005s2749 Capsella rubella HOM05D000249 ORTHO05D000206 6.9e-08 61.6 169 27.2
CARHR139920 Cardamine hirsuta HOM05D000249 ORTHO05D000206 6.9e-08 61.6 114 28.1
Thhalv10006383m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 6.9e-08 61.6 150 28.0
BraA09t41175Z Brassica rapa HOM05D000249 ORTHO05D000206 1.2e-07 60.8 115 29.6
AT2G44630 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 1.5e-07 60.5 173 27.7
AL2G16030 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 2.0e-07 60.1 172 26.2
AL34U10130 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 2.0e-07 60.1 115 27.8
AL8G22350 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 2.0e-07 60.1 115 27.8
A04p08940 Brassica napus HOM05D000249 ORTHO05D000206 2.0e-07 60.1 114 35.1
A09p57820 Brassica napus HOM05D000249 ORTHO05D000206 2.0e-07 60.1 115 30.4
BraA04t16590Z Brassica rapa HOM05D000249 ORTHO05D000206 2.0e-07 60.1 114 35.1
BraA09t41202Z Brassica rapa HOM05D000249 ORTHO05D000206 2.0e-07 60.1 120 29.2
BolC1t02703H Brassica oleracea HOM05D000249 ORTHO05D000206 2.6e-07 59.7 164 23.8
Carub.0002s0527 Capsella rubella HOM05D000249 ORTHO05D000206 3.4e-07 59.3 171 26.3
AT5G49000 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 4.5e-07 58.9 117 32.5
BcaC07g41103 Brassica carinata HOM05D000249 ORTHO05D000206 4.5e-07 58.9 115 26.1
AL7G23040 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 5.8e-07 58.5 118 30.5
Thhalv10026752m.g Eutrema salsugineum HOM05D000249 ORTHO05D000206 5.8e-07 58.5 179 26.3
AL3G21160 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 7.6e-07 58.2 173 26.6
CARHR113030 Cardamine hirsuta HOM05D000249 ORTHO05D000206 9.9e-07 57.8 171 28.1
AL8G15990 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 1.7e-06 57.0 167 25.7
Carub.0008s0877 Capsella rubella HOM05D000249 ORTHO05D000206 2.2e-06 56.6 112 31.2
CARHR112900 Cardamine hirsuta HOM05D000249 ORTHO05D000206 2.9e-06 56.2 184 26.1
AL7G11220 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 3.8e-06 55.8 174 26.4
AL7G27370 Arabidopsis lyrata HOM05D000249 ORTHO05D000206 3.8e-06 55.8 156 32.7
AT4G29370 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 3.8e-06 55.8 118 32.2
AT1G19930 Arabidopsis thaliana HOM05D000249 ORTHO05D000206 4.9e-06 55.5 115 27.8
Carub.0005s2133 Capsella rubella HOM05D000249 ORTHO05D000206 4.9e-06 55.5 113 25.7
Sp2g03450 Schrenkiella parvula HOM05D000249 ORTHO05D000206 4.9e-06 55.5 169 24.9
Sp7g36290 Schrenkiella parvula HOM05D000249 ORTHO05D000206 4.9e-06 55.5 115 28.7
Carub.0004s2726 Capsella rubella HOM05D000249 ORTHO05D000206 6.4e-06 55.1 169 24.9
Carub.0006s3479 Capsella rubella HOM05D000249 ORTHO05D000206 6.4e-06 55.1 172 26.7
Carub.0007s1118 Capsella rubella HOM05D000249 ORTHO05D000206 6.4e-06 55.1 164 26.2
CARHR174960 Cardamine hirsuta HOM05D000249 ORTHO05D000206 6.4e-06 55.1 169 23.7
Sp6g11670 Schrenkiella parvula HOM05D000249 ORTHO05D000206 8.4e-06 54.7 162 30.2


User provided reference genes

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