Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00567 Brassica carinata HOM05D003805 ORTHO05D004300 5.0e-60 234.2 113 100.0
BcaC07g39558 Brassica carinata HOM05D003805 ORTHO05D004300 2.2e-55 218.8 114 93.9
C08p26110 Brassica napus HOM05D003805 ORTHO05D004300 2.2e-55 218.8 114 93.9
BolC8t50229H Brassica oleracea HOM05D003805 ORTHO05D004300 2.2e-55 218.8 114 93.9
A09p44010 Brassica napus HOM05D003805 ORTHO05D004300 8.5e-52 206.8 108 93.5
BraA09t39859Z Brassica rapa HOM05D003805 ORTHO05D004300 8.5e-52 206.8 108 93.5
A01p23830 Brassica napus HOM05D003805 ORTHO05D004300 1.6e-50 202.6 115 87.8
BraA01t02291Z Brassica rapa HOM05D003805 ORTHO05D004300 1.6e-50 202.6 115 87.8
Thhalv10010834m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.4e-49 199.5 116 87.9
AL5G31260 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 6.7e-49 197.2 116 84.5
BcaB05g23252 Brassica carinata HOM05D003805 ORTHO05D004300 1.2e-48 196.4 116 81.9
CARHR160470 Cardamine hirsuta HOM05D003805 ORTHO05D004300 4.4e-48 194.5 116 81.9
AT3G50900 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.2e-47 192.2 116 81.9
BolC7t45120H Brassica oleracea HOM05D003805 ORTHO05D004300 3.2e-43 178.3 119 77.3
BraA03t13909Z Brassica rapa HOM05D003805 ORTHO05D004300 1.2e-42 176.4 143 67.1
Carub.0005s1729 Capsella rubella HOM05D003805 ORTHO05D004300 1.6e-42 176.0 120 76.7
A03p48010 Brassica napus HOM05D003805 ORTHO05D004300 4.0e-41 171.4 114 79.8
C07p46020 Brassica napus HOM05D003805 ORTHO05D004300 6.8e-41 170.6 115 78.3
C01p29550 Brassica napus HOM05D003805 ORTHO05D004300 1.7e-39 166.0 101 85.1
BolC1t02898H Brassica oleracea HOM05D003805 ORTHO05D004300 1.7e-39 166.0 101 85.1
BcaC09g50052 Brassica carinata HOM05D003805 ORTHO05D004300 6.3e-39 164.1 101 84.2
BcaC06g33070 Brassica carinata HOM05D003805 ORTHO05D004300 9.1e-38 160.2 177 53.7
Aa31LG4G19000 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.6e-37 159.5 125 68.0
BcaC06g33329 Brassica carinata HOM05D003805 ORTHO05D004300 1.7e-36 156.0 134 63.4
BcaC06g33330 Brassica carinata HOM05D003805 ORTHO05D004300 5.5e-35 151.0 151 58.3
THA.LOC104826691 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.7e-31 139.4 123 60.2
BcaC06g33072 Brassica carinata HOM05D003805 ORTHO05D004300 2.1e-26 122.5 117 59.0
BcaB02g10024 Brassica carinata HOM05D003805 ORTHO05D004300 8.9e-25 117.1 114 57.0
Sp2g30240 Schrenkiella parvula HOM05D003805 ORTHO05D004300 1.5e-24 116.3 120 55.0
CARHR281260 Cardamine hirsuta HOM05D003805 ORTHO05D004300 1.3e-23 113.2 123 54.5
A07p17480 Brassica napus HOM05D000001 ORTHO05D010258 1.7e-23 112.8 116 56.0
Duzib264G0487 Durio zibethinus HOM05D003805 ORTHO05D004300 1.4e-22 109.8 135 48.1
AL8G45040 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.4e-22 109.0 119 50.4
Thhalv10005334m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 7.0e-22 107.5 116 53.4
Sed0017680 Sechium edule HOM05D003805 ORTHO05D004300 7.8e-21 104.0 120 47.5
PGR119G0937 Punica granatum HOM05D003805 ORTHO05D004300 1.3e-20 103.2 130 46.9
QL06p047086 Quercus lobata HOM05D003805 ORTHO05D004300 1.3e-20 103.2 125 47.2
Aa31LG1G15010 Aethionema arabicum HOM05D003805 ORTHO05D004300 2.3e-20 102.4 114 50.9
HanXRQChr07g0191651 Helianthus annuus HOM05D003805 ORTHO05D004300 3.0e-20 102.1 127 42.5
Cpa.g.sc6.148 Carica papaya HOM05D003805 ORTHO05D004300 3.9e-20 101.7 144 44.4
Thecc.01G031800 Theobroma cacao HOM05D003805 ORTHO05D004300 6.6e-20 100.9 137 45.3
AT5G66490 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 1.1e-19 100.1 114 50.0
BraA07t29468Z Brassica rapa HOM05D000001 ORTHO05D010258 1.1e-19 100.1 118 52.5
GSVIVG01018926001 Vitis vinifera HOM05D003805 ORTHO05D004300 1.1e-19 100.1 123 45.5
Gohir.D12G063500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 2.5e-19 99.0 140 42.9
Gorai.008G066800 Gossypium raimondii HOM05D003805 ORTHO05D004300 2.5e-19 99.0 140 42.9
Gohir.D11G189500 Gossypium hirsutum HOM05D003805 ORTHO05D004300 7.3e-19 97.4 134 44.8
Sed0008243 Sechium edule HOM05D003805 ORTHO05D004300 7.3e-19 97.4 121 48.8
Duzib147G0407 Durio zibethinus HOM05D003805 ORTHO05D004300 9.5e-19 97.1 137 45.3
Psat2g157880 Pisum sativum HOM05D003805 ORTHO05D004300 9.5e-19 97.1 133 45.9
TWI09G1369 Tripterygium wilfordii HOM05D003805 ORTHO05D004300 9.5e-19 97.1 125 43.2
VMungo1215G0776 Vigna mungo HOM05D003805 ORTHO05D004300 9.5e-19 97.1 124 47.6
Gorai.007G201700 Gossypium raimondii HOM05D003805 ORTHO05D004300 1.2e-18 96.7 136 44.1
Medtr5g020860 Medicago truncatula HOM05D003805 ORTHO05D004300 1.2e-18 96.7 137 45.3
Phvul.002G032400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 1.2e-18 96.7 127 46.5
BcaC06g34708 Brassica carinata HOM05D003805 ORTHO05D004300 1.6e-18 96.3 116 51.7
C07p25410 Brassica napus HOM05D000001 ORTHO05D010258 1.6e-18 96.3 116 51.7
BolC7t43064H Brassica oleracea HOM05D000001 ORTHO05D010258 1.6e-18 96.3 116 51.7
Oeu035340.1 Olea europaea HOM05D003805 ORTHO05D004300 1.6e-18 96.3 127 43.3
CSS0002171 Camellia sinensis var. sinensis HOM05D003805 ORTHO05D004300 2.1e-18 95.9 127 45.7
Hma1.2p1_1297F.1_g274110 Hydrangea macrophylla HOM05D003805 ORTHO05D004300 2.1e-18 95.9 130 43.8
Haze_15065 Corylus avellana HOM05D000625 ORTHO05D010258 3.6e-18 95.1 121 47.9
ECA238G4264 Erigeron canadensis HOM05D003805 ORTHO05D004300 3.6e-18 95.1 134 41.8
DCAR_016030 Daucus carota HOM05D003805 ORTHO05D004300 4.7e-18 94.7 135 41.5
Gohir.A11G183100 Gossypium hirsutum HOM05D003805 ORTHO05D004300 4.7e-18 94.7 131 44.3
Glyma.11G071100 Glycine max HOM05D003805 ORTHO05D004300 1.1e-17 93.6 122 43.4
Gohir.A12G063700 Gossypium hirsutum HOM05D003805 ORTHO05D004300 1.8e-17 92.8 140 41.4
Lsat_1_v5_gn_2_77300 Lactuca sativa HOM05D003805 ORTHO05D004300 1.8e-17 92.8 132 40.2
Lsat_1_v5_gn_2_77320 Lactuca sativa HOM05D003805 ORTHO05D004300 5.2e-17 91.3 119 43.7
COL.COLO4_22043 Corchorus olitorius HOM05D003805 ORTHO05D004300 8.9e-17 90.5 133 42.9
Ah.03g141100 Amaranthus hybridus HOM05D003805 ORTHO05D004300 1.5e-16 89.7 145 37.9
MELO3C007840.2 Cucumis melo HOM05D003805 ORTHO05D004300 1.5e-16 89.7 127 40.9
Lalb_Chr09g0322201 Lupinus albus HOM05D003805 ORTHO05D004300 1.5e-16 89.7 125 40.8
AL7G14560 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 2.0e-16 89.4 128 43.8
Glyma.01G172100 Glycine max HOM05D003805 ORTHO05D004300 2.0e-16 89.4 123 43.9
Medtr8g077145 Medicago truncatula HOM05D003805 ORTHO05D004300 2.0e-16 89.4 131 42.0
SalBow8G4897 Salvia bowleyana HOM05D003805 ORTHO05D004300 2.6e-16 89.0 120 42.5
AT4G36500 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 3.4e-16 88.6 128 43.8
BcaB03g12394 Brassica carinata HOM05D003805 ORTHO05D004300 5.8e-16 87.8 128 45.3
BcaNung05311 Brassica carinata HOM05D003805 ORTHO05D004300 5.8e-16 87.8 128 43.0
BraA08t34177Z Brassica rapa HOM05D003805 ORTHO05D004300 5.8e-16 87.8 128 43.0
A08p22170 Brassica napus HOM05D003805 ORTHO05D004300 7.5e-16 87.4 128 42.2
Sp7g34160 Schrenkiella parvula HOM05D003805 ORTHO05D004300 7.5e-16 87.4 128 43.0
TPR.G24102 Trifolium pratense HOM05D003805 ORTHO05D004300 7.5e-16 87.4 131 41.2
Carub.0007s0382 Capsella rubella HOM05D003805 ORTHO05D004300 9.8e-16 87.0 128 44.5
CARHR244820 Cardamine hirsuta HOM05D003805 ORTHO05D004300 9.8e-16 87.0 128 43.0
Ca_22293_v3 Cicer arietinum L. HOM05D003805 ORTHO05D004300 9.8e-16 87.0 134 41.8
Sabra07G0019500 Salix brachista HOM05D003805 ORTHO05D004300 9.8e-16 87.0 113 44.2
Sp1g22390 Schrenkiella parvula HOM05D003805 ORTHO05D004300 9.8e-16 87.0 127 41.7
Sp7g34150 Schrenkiella parvula HOM05D003805 ORTHO05D004300 9.8e-16 87.0 128 43.0
Thhalv10023197m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 1.7e-15 86.3 123 43.1
CsaV3_6G046430 Cucumis sativus L. HOM05D003805 ORTHO05D004300 2.2e-15 85.9 121 43.0
BcaC01g00464 Brassica carinata HOM05D003805 ORTHO05D004300 2.9e-15 85.5 128 42.2
BcaNung00729 Brassica carinata HOM05D003805 ORTHO05D004300 2.9e-15 85.5 128 42.2
A01p02370 Brassica napus HOM05D003805 ORTHO05D004300 2.9e-15 85.5 128 42.2
C01p02570 Brassica napus HOM05D003805 ORTHO05D004300 2.9e-15 85.5 128 42.2
C01p02580 Brassica napus HOM05D003805 ORTHO05D004300 2.9e-15 85.5 128 42.2
C03p80150 Brassica napus HOM05D003805 ORTHO05D004300 2.9e-15 85.5 128 42.2
BolC1t00246H Brassica oleracea HOM05D003805 ORTHO05D004300 2.9e-15 85.5 128 42.2
BolC3t20271H Brassica oleracea HOM05D003805 ORTHO05D004300 2.9e-15 85.5 128 42.2
BraA01t00225Z Brassica rapa HOM05D003805 ORTHO05D004300 2.9e-15 85.5 128 42.2
Lalb_Chr16g0391061 Lupinus albus HOM05D003805 ORTHO05D004300 2.9e-15 85.5 127 41.7
VMungo0251G0164 Vigna mungo HOM05D003805 ORTHO05D004300 2.9e-15 85.5 130 41.5
Thhalv10026576m.g Eutrema salsugineum HOM05D003805 ORTHO05D004300 3.7e-15 85.1 128 43.0
Lj2g0025508 Lotus japonicus HOM05D003805 ORTHO05D004300 3.7e-15 85.1 126 41.3
BolC1t00245H Brassica oleracea HOM05D003805 ORTHO05D004300 4.9e-15 84.7 128 42.2
Glyma.02G054900 Glycine max HOM05D003805 ORTHO05D004300 4.9e-15 84.7 129 41.9
Glyma.02G055000 Glycine max HOM05D003805 ORTHO05D004300 4.9e-15 84.7 128 41.4
Phvul.003G255400 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 4.9e-15 84.7 126 40.5
Potri.007G022300 Populus trichocarpa HOM05D003805 ORTHO05D004300 4.9e-15 84.7 115 45.2
TPR.G24112 Trifolium pratense HOM05D003805 ORTHO05D004300 4.9e-15 84.7 130 40.0
BcaNung00728 Brassica carinata HOM05D003805 ORTHO05D004300 8.3e-15 84.0 128 42.2
C07p61730 Brassica napus HOM05D003805 ORTHO05D004300 8.3e-15 84.0 128 40.6
BolC7t46598H Brassica oleracea HOM05D003805 ORTHO05D004300 8.3e-15 84.0 128 40.6
HanXRQChr14g0440581 Helianthus annuus HOM05D003805 ORTHO05D004300 8.3e-15 84.0 127 38.6
THA.LOC104819775 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 8.3e-15 84.0 132 40.2
Sc16g0002610 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.1e-14 83.6 132 40.2
Aa31LG6G13290 Aethionema arabicum HOM05D003805 ORTHO05D004300 1.4e-14 83.2 118 43.2
Lj4g0007128 Lotus japonicus HOM05D003805 ORTHO05D004300 1.4e-14 83.2 127 39.4
THA.LOC104807465 Tarenaya hassleriana HOM05D003805 ORTHO05D004300 1.9e-14 82.8 128 41.4
VMungo0251G1302 Vigna mungo HOM05D003805 ORTHO05D004300 1.9e-14 82.8 126 41.3
AT2G18210 Arabidopsis thaliana HOM05D003805 ORTHO05D004300 2.4e-14 82.4 129 43.4
A01p02360 Brassica napus HOM05D003805 ORTHO05D004300 2.4e-14 82.4 128 41.4
arahy.Tifrunner.gnm1.ann1.IAMR94 Arachis hypogaea HOM05D003805 ORTHO05D004300 3.2e-14 82.0 133 40.6
unitig_0.g473 Utricularia gibba HOM05D003805 ORTHO05D004300 3.2e-14 82.0 115 40.9
Lj4g0009905 Lotus japonicus HOM05D003805 ORTHO05D004300 4.1e-14 81.6 127 38.6
Phvul.003G255300 Phaseolus vulgaris HOM05D003805 ORTHO05D004300 4.1e-14 81.6 126 40.5
BraA01t00224Z Brassica rapa HOM05D003805 ORTHO05D004300 7.0e-14 80.9 128 41.4
BcaNung05312 Brassica carinata HOM05D003805 ORTHO05D004300 9.2e-14 80.5 128 39.8
A03p64280 Brassica napus HOM05D003805 ORTHO05D004300 9.2e-14 80.5 128 39.8
BraA03t15498Z Brassica rapa HOM05D003805 ORTHO05D004300 9.2e-14 80.5 128 39.8
Lj4g0028115 Lotus japonicus HOM05D003805 ORTHO05D004300 9.2e-14 80.5 127 38.6
Psat4g094680 Pisum sativum HOM05D003805 ORTHO05D004300 9.2e-14 80.5 130 39.2
Glyma.16G135600 Glycine max HOM05D003805 ORTHO05D004300 1.2e-13 80.1 129 40.3
Manes.02G096100 Manihot esculenta HOM05D003805 ORTHO05D004300 1.2e-13 80.1 127 39.4
Psat4g094760 Pisum sativum HOM05D003805 ORTHO05D004300 1.2e-13 80.1 130 39.2
Sc03g0003120 Simmondsia chinensis HOM05D003805 ORTHO05D004300 1.2e-13 80.1 142 35.9
Manes.01G137700 Manihot esculenta HOM05D003805 ORTHO05D004300 1.6e-13 79.7 144 37.5
TPR.G2362 Trifolium pratense HOM05D003805 ORTHO05D004300 1.6e-13 79.7 136 43.4
Nitab4.5_0012261g0010 Nicotiana tabacum HOM05D003805 ORTHO05D004300 2.0e-13 79.3 110 41.8
Psat4g094720 Pisum sativum HOM05D003805 ORTHO05D004300 2.0e-13 79.3 130 39.2
AUR62004083 Chenopodium quinoa HOM05D000625 ORTHO05D000467 3.5e-13 78.6 101 41.6
Glyma.16G135400 Glycine max HOM05D003805 ORTHO05D004300 1.3e-12 76.6 118 40.7
Peaxi162Scf00366g00711 Petunia axillaris HOM05D003805 ORTHO05D004300 2.3e-12 75.9 117 39.3
AL3G51440 Arabidopsis lyrata HOM05D003805 ORTHO05D004300 3.0e-12 75.5 129 39.5
Carub.0003s3237 Capsella rubella HOM05D003805 ORTHO05D004300 3.9e-12 75.1 129 40.3
Carub.0003s3236 Capsella rubella HOM05D003805 ORTHO05D004300 5.0e-12 74.7 129 40.3
Nitab4.5_0000178g0350 Nicotiana tabacum HOM05D003805 ORTHO05D004300 5.0e-12 74.7 120 41.7
Migut.H02530 Erythranthe guttata HOM05D003805 ORTHO05D004300 6.6e-12 74.3 129 38.8
PGSC0003DMG400003519 Solanum tuberosum HOM05D003805 ORTHO05D004300 6.6e-12 74.3 115 37.4
ECA238G1778 Erigeron canadensis HOM05D003805 ORTHO05D004300 1.1e-11 73.6 124 36.3
Nitab4.5_0007490g0050 Nicotiana tabacum HOM05D003805 ORTHO05D004300 1.1e-11 73.6 116 38.8
CAN.G358.54 Capsicum annuum HOM05D003805 ORTHO05D004300 1.5e-11 73.2 118 39.0
Dinv40009 Davidia involucrata HOM05D002962 ORTHO05D004300 1.9e-11 72.8 110 44.5
Solyc02g085005.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 3.3e-11 72.0 112 37.5
Sopen02g029690 Solanum pennellii HOM05D003805 ORTHO05D004300 3.3e-11 72.0 112 37.5
Lalb_Chr09g0333461 Lupinus albus HOM05D003805 ORTHO05D004300 4.3e-11 71.6 52 61.5
Actinidia19196 Actinidia chinensis HOM05D002962 ORTHO05D003280 9.5e-11 70.5 111 41.4
TAR247G0001 Trochodendron aralioides HOM05D003805 ORTHO05D004300 1.2e-10 70.1 111 38.7
Oeu025181.1 Olea europaea HOM05D003805 ORTHO05D004300 1.6e-10 69.7 109 38.5
Peaxi162Scf00366g00066 Petunia axillaris HOM05D003805 ORTHO05D004300 2.1e-10 69.3 116 37.9
Lsat_1_v5_gn_2_77360 Lactuca sativa HOM05D003805 ORTHO05D004300 2.8e-10 68.9 106 41.5
SGA_v2.0_scaffold12G06299 Striga asiatica HOM05D003805 ORTHO05D004300 3.6e-10 68.6 117 40.2
Nn5g29663 Nelumbo nucifera HOM05D003805 ORTHO05D004300 4.7e-10 68.2 114 35.1
PGSC0003DMG402003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 4.7e-10 68.2 99 41.4
Sopen02g029700 Solanum pennellii HOM05D003805 ORTHO05D004300 8.1e-10 67.4 118 38.1
Nn1g04930 Nelumbo nucifera HOM05D003805 ORTHO05D004300 2.3e-09 65.9 57 52.6
SGA_v2.0_scaffold51G18830 Striga asiatica HOM05D003805 ORTHO05D004300 5.2e-09 64.7 118 37.3
HPP92_023423 Vanilla planifolia HOM05D003805 ORTHO05D004300 5.2e-09 64.7 106 38.7
Aa31LG8G15780 Aethionema arabicum HOM05D003805 ORTHO05D004300 6.8e-09 64.3 63 50.8
Peaxi162Scf00366g00073 Petunia axillaris HOM05D003805 ORTHO05D004300 6.8e-09 64.3 120 37.5
Lsat_1_v5_gn_8_64500 Lactuca sativa HOM05D003805 ORTHO05D004300 4.4e-08 61.6 72 47.2
Solyc02g085010.1 Solanum lycopersicum HOM05D003805 ORTHO05D004300 4.4e-08 61.6 121 36.4
Aqoxy6G01157 Aquilegia oxysepala HOM05D003805 ORTHO05D004300 7.5e-08 60.8 124 33.1
CDE05G0774 Ceratophyllum demersum HOM05D007001 ORTHO05D005587 1.3e-07 60.1 104 35.6
PGSC0003DMG401003517 Solanum tuberosum HOM05D003805 ORTHO05D004300 1.3e-07 60.1 114 33.3
ATR0568G162 Amborella trichopoda HOM05D003805 ORTHO05D004300 4.9e-07 58.2 70 40.0
Lalb_Chr05g0212681 Lupinus albus HOM05D003805 ORTHO05D004300 6.4e-07 57.8 108 38.0
PGSC0003DMG400003518 Solanum tuberosum HOM05D003805 ORTHO05D004300 6.4e-07 57.8 114 36.0
MBI10_g06731_MAGBIO Magnolia biondii HOM05D003805 ORTHO05D004300 4.1e-06 55.1 112 37.5
ATR0568G115 Amborella trichopoda HOM05D003805 ORTHO05D004300 5.4e-06 54.7 111 30.6


User provided reference genes

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