Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00564 Brassica carinata HOM05D006540 ORTHO05D008202 5.5e-145 517.7 278 100.0
BcaC06g33900 Brassica carinata HOM05D006540 ORTHO05D008202 2.4e-92 342.8 284 70.8
A06p41910 Brassica napus HOM05D006540 ORTHO05D008202 4.6e-91 338.6 288 69.1
BraA06t27110Z Brassica rapa HOM05D006540 ORTHO05D008202 4.6e-91 338.6 288 69.1
AL5G15370 Arabidopsis lyrata HOM05D006540 ORTHO05D008202 8.7e-90 334.3 283 69.6
AT3G26580 Arabidopsis thaliana HOM05D006540 ORTHO05D008202 1.5e-89 333.6 284 69.0
C07p35560 Brassica napus HOM05D006540 ORTHO05D008202 2.5e-89 332.8 284 69.4
BolC7t44080H Brassica oleracea HOM05D006540 ORTHO05D008202 2.5e-89 332.8 284 69.4
Aa31LG2G5960 Aethionema arabicum HOM05D006540 ORTHO05D008202 5.6e-89 331.6 290 66.9
Thhalv10004491m.g Eutrema salsugineum HOM05D006540 ORTHO05D008202 1.6e-88 330.1 291 67.7
Sp2g15690 Schrenkiella parvula HOM05D006540 ORTHO05D008202 8.1e-88 327.8 295 67.1
BcaC06g31063 Brassica carinata HOM05D006540 ORTHO05D008202 1.8e-87 326.6 291 66.7
CARHR147570 Cardamine hirsuta HOM05D006540 ORTHO05D008202 1.3e-85 320.5 290 65.2
Carub.0005s0457 Capsella rubella HOM05D006540 ORTHO05D008202 1.5e-81 307.0 287 63.8
Migut.K00595 Erythranthe guttata HOM05D006540 ORTHO05D008202 1.3e-74 283.9 186 75.8
SalBow2G2200 Salvia bowleyana HOM05D006540 ORTHO05D008202 8.7e-74 281.2 191 73.8
MSTRG.568 Avicennia marina HOM05D006540 ORTHO05D008202 1.9e-73 280.0 187 74.9
ClCG05G025710 Citrullus lanatus HOM05D006540 ORTHO05D008202 1.3e-72 277.3 233 64.8
CiPaw.05G182700 Carya illinoinensis HOM05D006540 ORTHO05D008202 6.3e-72 275.0 231 66.7
Cpa.g.sc33.16 Carica papaya HOM05D006540 ORTHO05D008202 1.8e-71 273.5 288 56.2
Phvul.003G064400 Phaseolus vulgaris HOM05D006540 ORTHO05D008202 1.2e-70 270.8 229 64.2
Atru.chr11.2104 Acer truncatum HOM05D006540 ORTHO05D008202 2.0e-70 270.0 232 62.9
Cc11_g15700 Coffea canephora HOM05D006540 ORTHO05D008202 5.9e-70 268.5 189 72.0
MD16G1102400 Malus domestica HOM05D006540 ORTHO05D008202 2.2e-69 266.5 229 62.0
Oeu059907.1 Olea europaea HOM05D006540 ORTHO05D008202 2.9e-69 266.2 194 70.6
Ah.03g133040 Amaranthus hybridus HOM05D006540 ORTHO05D008202 1.1e-68 264.2 187 71.7
Ca_22583_v3 Cicer arietinum L. HOM05D006540 ORTHO05D008202 1.9e-68 263.5 183 74.9
MD13G1101900 Malus domestica HOM05D006540 ORTHO05D008202 7.2e-68 261.5 232 61.2
EL10Ac6g13801 Beta vulgaris HOM05D006540 ORTHO05D008202 1.6e-67 260.4 186 71.0
Glyma.17G134500 Glycine max HOM05D006540 ORTHO05D008202 3.6e-67 259.2 265 55.8
Lj4g0023216 Lotus japonicus HOM05D006540 ORTHO05D008202 1.8e-66 256.9 234 62.4
THA.LOC104825662 Tarenaya hassleriana HOM05D006540 ORTHO05D008202 2.3e-66 256.5 276 57.6
arahy.Tifrunner.gnm1.ann1.NX3C69 Arachis hypogaea HOM05D006540 ORTHO05D008202 3.9e-66 255.8 279 55.2
Duzib268G1404 Durio zibethinus HOM05D006540 ORTHO05D008202 3.9e-66 255.8 231 61.5
Eucgr.B03288 Eucalyptus grandis HOM05D006540 ORTHO05D008202 5.1e-66 255.4 230 62.2
PGR102G2745 Punica granatum HOM05D006540 ORTHO05D008202 6.7e-66 255.0 230 62.6
arahy.Tifrunner.gnm1.ann1.LD9JWE Arachis hypogaea HOM05D006540 ORTHO05D008202 1.5e-65 253.8 279 54.8
RcHm_v2.0_Chr4g0432921 Rosa chinensis HOM05D006540 ORTHO05D008202 4.3e-65 252.3 235 59.6
CANSAT35G0572 Cannabis sativa HOM05D006540 ORTHO05D008202 5.7e-65 251.9 234 60.7
FAN07G1259 Fragaria x ananassa HOM05D006540 ORTHO05D008202 9.7e-65 251.1 234 60.3
FAN17G1845 Fragaria x ananassa HOM05D006540 ORTHO05D008202 9.7e-65 251.1 234 60.3
FAN22G2305 Fragaria x ananassa HOM05D006540 ORTHO05D008202 9.7e-65 251.1 234 60.3
Ciclev10032003m.g Citrus clementina HOM05D006540 ORTHO05D008202 2.2e-64 250.0 231 61.0
Medtr8g069450 Medicago truncatula HOM05D006540 ORTHO05D008202 2.8e-64 249.6 233 62.2
Cfa009208 Carpinus fangiana HOM05D006540 ORTHO05D008202 3.7e-64 249.2 283 52.7
Peaxi162Scf00128g00138 Petunia axillaris HOM05D006540 ORTHO05D008202 4.8e-64 248.8 190 69.5
FvH4_4g25530 Fragaria vesca HOM05D006540 ORTHO05D008202 1.1e-63 247.7 234 59.4
FAN12G0822 Fragaria x ananassa HOM05D006540 ORTHO05D008202 1.1e-63 247.7 234 59.4
VMungo0251G1250 Vigna mungo HOM05D006540 ORTHO05D008202 1.1e-63 247.7 217 63.1
Thecc.02G259400 Theobroma cacao HOM05D006540 ORTHO05D008202 1.4e-63 247.3 140 86.4
Manes.13G024900 Manihot esculenta HOM05D006540 ORTHO05D008202 1.8e-63 246.9 231 59.7
Prupe.1G243900 Prunus persica HOM05D006540 ORTHO05D008202 1.8e-63 246.9 231 60.6
Potri.013G090000 Populus trichocarpa HOM05D006540 ORTHO05D008202 3.1e-63 246.1 232 60.3
DCAR_024432 Daucus carota HOM05D006540 ORTHO05D008202 4.1e-63 245.7 234 60.3
Actinidia37429 Actinidia chinensis HOM05D006540 ORTHO05D008202 5.3e-63 245.4 178 71.3
ECA233G5619 Erigeron canadensis HOM05D006540 ORTHO05D008202 5.3e-63 245.4 222 60.8
Lsat_1_v5_gn_8_152220 Lactuca sativa HOM05D006540 ORTHO05D008202 5.3e-63 245.4 186 68.8
Lj6A811T79 Lonicera japonica HOM05D006540 ORTHO05D008202 5.3e-63 245.4 236 58.5
ATR0686G190 Amborella trichopoda HOM05D006540 ORTHO05D008202 1.2e-62 244.2 248 58.5
vmacro16198 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 1.2e-62 244.2 247 57.5
Sabra13G0070200 Salix brachista HOM05D006540 ORTHO05D008202 2.6e-62 243.0 281 53.4
PSO478G4529 Papaver somniferum HOM05D006540 ORTHO05D008202 4.5e-62 242.3 281 51.2
PSO017G4849 Papaver somniferum HOM05D006540 ORTHO05D008202 5.9e-62 241.9 281 52.0
Gohir.A01G159600 Gossypium hirsutum HOM05D006540 ORTHO05D008202 7.7e-62 241.5 141 82.3
PGSC0003DMG400018605 Solanum tuberosum HOM05D006540 ORTHO05D008202 1.3e-61 240.7 231 58.4
CDE02G2769 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 1.7e-61 240.4 183 66.1
AUR62024282 Chenopodium quinoa HOM05D006540 ORTHO05D008202 1.7e-61 240.4 212 61.3
Gohir.D01G150500 Gossypium hirsutum HOM05D006540 ORTHO05D008202 2.9e-61 239.6 284 51.4
Gorai.002G186600 Gossypium raimondii HOM05D006540 ORTHO05D008202 2.9e-61 239.6 284 51.4
CDE09G1037 Ceratophyllum demersum HOM05D006540 ORTHO05D008202 8.5e-61 238.0 183 65.6
Duzib248G0112 Durio zibethinus HOM05D006540 ORTHO05D008202 1.4e-60 237.3 233 57.5
Hma1.2p1_0223F.1_g093990 Hydrangea macrophylla HOM05D006540 ORTHO05D008202 1.2e-59 234.2 261 54.4
Nn4g22628 Nelumbo nucifera HOM05D006540 ORTHO05D008202 2.1e-59 233.4 139 82.0
GSVIVG01004073001 Vitis vinifera HOM05D006540 ORTHO05D008202 2.7e-59 233.0 144 77.1
COL.COLO4_24263 Corchorus olitorius HOM05D006540 ORTHO05D008202 3.6e-59 232.6 145 76.6
Nitab4.5_0000007g0060 Nicotiana tabacum HOM05D006540 ORTHO05D008202 3.6e-59 232.6 228 57.9
CSS0000303 Camellia sinensis var. sinensis HOM05D006540 ORTHO05D008202 6.1e-59 231.9 141 79.4
Aqoxy3G01202 Aquilegia oxysepala HOM05D006540 ORTHO05D008202 1.8e-58 230.3 186 68.3
Psat4g116680 Pisum sativum HOM05D006540 ORTHO05D008202 2.3e-58 229.9 232 57.8
QL03p058139 Quercus lobata HOM05D006540 ORTHO05D008202 2.3e-58 229.9 219 59.4
CAN.G832.5 Capsicum annuum HOM05D006540 ORTHO05D008202 3.0e-58 229.6 139 78.4
Sopen05g008320 Solanum pennellii HOM05D006540 ORTHO05D008202 5.1e-58 228.8 134 79.9
Nitab4.5_0003628g0010 Nicotiana tabacum HOM05D006540 ORTHO05D008202 1.1e-57 227.6 228 56.6
Dinv24788 Davidia involucrata HOM05D006540 ORTHO05D008202 3.3e-57 226.1 226 59.3
AUR62005459 Chenopodium quinoa HOM05D006540 ORTHO05D008202 9.7e-57 224.6 166 68.7
Rhsim12G0110600 Rhododendron simsii HOM05D006540 ORTHO05D008202 9.7e-57 224.6 241 54.8
Actinidia15092 Actinidia chinensis HOM05D006540 ORTHO05D008202 2.8e-56 223.0 140 77.1
unitig_21.g20872 Utricularia gibba HOM05D006540 ORTHO05D008202 2.8e-56 223.0 188 62.8
TPR.G17765 Trifolium pratense HOM05D006540 ORTHO05D008202 3.7e-56 222.6 230 55.2
HanXRQChr08g0208131 Helianthus annuus HOM05D006540 ORTHO05D008202 8.2e-56 221.5 187 63.1
MELO3C011955.2 Cucumis melo HOM05D006540 ORTHO05D008202 1.1e-55 221.1 215 59.1
CsaV3_5G031170 Cucumis sativus L. HOM05D006540 ORTHO05D008202 4.1e-55 219.2 215 58.6
TWI18G0987 Tripterygium wilfordii HOM05D006540 ORTHO05D008202 1.5e-54 217.2 232 54.3
Lalb_Chr05g0228421 Lupinus albus HOM05D006540 ORTHO05D008202 2.0e-54 216.9 254 52.0
TAR622G1382 Trochodendron aralioides HOM05D006540 ORTHO05D008202 5.9e-54 215.3 231 55.8
TAR374G0845 Trochodendron aralioides HOM05D006540 ORTHO05D008202 1.3e-53 214.2 125 83.2
vmacro01127 Vaccinium macrocarpon HOM05D006540 ORTHO05D008202 1.3e-53 214.2 238 53.4
Rhsim12G0041000 Rhododendron simsii HOM05D006540 ORTHO05D008202 8.0e-51 204.9 182 63.2
Sc04g0009450 Simmondsia chinensis HOM05D006540 ORTHO05D008202 3.0e-50 203.0 277 46.2
MBI10_g13027_MAGBIO Magnolia biondii HOM05D006540 ORTHO05D008202 6.7e-50 201.8 120 80.0
Sed0005489 Sechium edule HOM05D006540 ORTHO05D008202 3.3e-49 199.5 218 55.0
HPP92_002022 Vanilla planifolia HOM05D006540 ORTHO05D008202 5.7e-49 198.7 192 56.8
Haze_12245 Corylus avellana HOM05D006540 ORTHO05D008202 2.8e-48 196.4 302 44.4
Os03g0428800 Oryza sativa ssp. japonica HOM05D006540 ORTHO05D008202 2.8e-48 196.4 146 66.4
Zm00001eb096140 Zea mays HOM05D006540 ORTHO05D008202 4.2e-44 182.6 184 56.5
AagrBONN_evm.TU.Sc2ySwM_340.367 Anthoceros agrestis HOM05D006540 ORTHO05D008202 5.0e-37 159.1 186 45.2
Mapoly0037s0067 Marchantia polymorpha HOM05D006540 ORTHO05D008202 6.1e-35 152.1 186 47.8
SMO347G0417 Selaginella moellendorffii HOM05D006540 ORTHO05D008202 8.0e-35 151.8 182 45.6
SEGI_37038 Sequoiadendron giganteum HOM05D006540 ORTHO05D008202 5.2e-34 149.1 118 56.8
Pp3c27_6670 Physcomitrium patens HOM05D006540 ORTHO05D008202 2.7e-30 136.7 139 46.0
RcHm_v2.0_Chr5g0067811 Rosa chinensis HOM05D006540 ORTHO05D008202 7.5e-17 92.0 61 77.0
Cre12.g528050 Chlamydomonas reinhardtii HOM05D006540 ORTHO05D008202 8.3e-16 88.6 194 30.4
MCO07G599 Micromonas commoda HOM05D006540 ORTHO05D008202 4.1e-15 86.3 136 35.3
CBR_g8379 Chara braunii HOM05D006540 ORTHO05D008202 2.7e-14 83.6 88 45.5
QL04p066147 Quercus lobata HOM05D006540 ORTHO05D008202 1.0e-13 81.6 72 65.3
unitig_744.g24293 Utricularia gibba HOM05D006540 ORTHO05D008202 1.5e-09 67.8 44 63.6
PRCOL_00004949 Prasinoderma coloniale HOM05D006540 ORTHO05D008202 7.5e-09 65.5 134 30.6


User provided reference genes

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