Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00554 Brassica carinata HOM05D005654 ORTHO05D006438 1.4e-91 339.7 186 100.0
BcaNung00403 Brassica carinata HOM05D005654 ORTHO05D006438 1.9e-80 302.8 186 86.0
BolC8t50249H Brassica oleracea HOM05D005654 ORTHO05D006438 3.2e-80 302.0 186 88.2
BraA09t39870Z Brassica rapa HOM05D005654 ORTHO05D006438 4.2e-80 301.6 186 87.1
BcaC06g33063 Brassica carinata HOM05D005654 ORTHO05D006438 5.5e-80 301.2 186 86.0
BcaC07g39579 Brassica carinata HOM05D005654 ORTHO05D006438 1.6e-79 299.7 186 87.6
C08p26310 Brassica napus HOM05D005654 ORTHO05D006438 1.6e-79 299.7 186 87.6
C07p46090 Brassica napus HOM05D000363 ORTHO05D005000 7.9e-79 297.4 183 85.2
BolC7t45125H Brassica oleracea HOM05D000363 ORTHO05D005000 7.9e-79 297.4 183 85.2
BraA03t13914Z Brassica rapa HOM05D000363 ORTHO05D005000 1.0e-78 297.0 183 85.2
A09p44110 Brassica napus HOM05D000363 ORTHO05D006438 1.3e-78 296.6 183 85.8
A03p48070 Brassica napus HOM05D000363 ORTHO05D005000 1.8e-78 296.2 183 85.2
Thhalv10010748m.g Eutrema salsugineum HOM05D005654 ORTHO05D006438 5.6e-77 291.2 189 82.5
Sp5g11200 Schrenkiella parvula HOM05D005654 ORTHO05D006438 2.8e-76 288.9 189 82.5
AL5G31430 Arabidopsis lyrata HOM05D005654 ORTHO05D006438 8.4e-73 277.3 190 77.9
AT3G51010 Arabidopsis thaliana HOM05D005654 ORTHO05D006438 5.5e-72 274.6 190 77.9
Carub.0005s1741 Capsella rubella HOM05D005654 ORTHO05D006438 5.5e-72 274.6 190 77.9
THA.LOC104819191 Tarenaya hassleriana HOM05D005654 ORTHO05D006438 1.7e-60 236.5 189 69.3
Aa31LG4G19130 Aethionema arabicum HOM05D005654 ORTHO05D006438 2.8e-60 235.7 187 69.5
RcHm_v2.0_Chr6g0277811 Rosa chinensis HOM05D005654 ORTHO05D006438 5.9e-50 201.4 185 62.2
QL08p063081 Quercus lobata HOM05D005654 ORTHO05D006438 2.2e-49 199.5 187 60.4
Thecc.01G026300 Theobroma cacao HOM05D005654 ORTHO05D006438 2.9e-49 199.1 188 61.2
QL06p034798 Quercus lobata HOM05D005654 ORTHO05D006438 5.5e-48 194.9 183 60.1
QL10p007390 Quercus lobata HOM05D005654 ORTHO05D006438 5.5e-48 194.9 183 60.1
CiPaw.08G137200 Carya illinoinensis HOM05D005654 ORTHO05D006438 7.2e-48 194.5 185 59.5
FvH4_2g15150 Fragaria vesca HOM05D005654 ORTHO05D006438 7.2e-48 194.5 185 61.1
FAN07G1349 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.2e-47 193.7 185 60.0
MD05G1010700 Malus domestica HOM05D005654 ORTHO05D006438 1.6e-47 193.4 185 64.3
Sopen04g003980 Solanum pennellii HOM05D005654 ORTHO05D006438 3.6e-47 192.2 184 63.0
COL.COLO4_21992 Corchorus olitorius HOM05D005654 ORTHO05D006438 4.7e-47 191.8 188 60.6
Nitab4.5_0007445g0010 Nicotiana tabacum HOM05D005654 ORTHO05D006438 8.0e-47 191.0 186 59.7
Prupe.8G013400 Prunus persica HOM05D005654 ORTHO05D006438 8.0e-47 191.0 185 61.6
CSS0048601 Camellia sinensis var. sinensis HOM05D005654 ORTHO05D006438 1.4e-46 190.3 186 59.7
FAN17G0825 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.4e-46 190.3 185 59.5
Nitab4.5_0002707g0030 Nicotiana tabacum HOM05D005654 ORTHO05D006438 1.4e-46 190.3 188 58.5
Haze_03832 Corylus avellana HOM05D005654 ORTHO05D006438 2.3e-46 189.5 182 57.1
CANSAT01G3286 Cannabis sativa HOM05D005654 ORTHO05D006438 3.0e-46 189.1 182 59.3
Solyc04g008800.3 Solanum lycopersicum HOM05D005654 ORTHO05D006438 3.0e-46 189.1 182 60.4
FAN22G0080 Fragaria x ananassa HOM05D005654 ORTHO05D006438 3.9e-46 188.7 185 58.9
Sabra07G0015400 Salix brachista HOM05D005654 ORTHO05D006438 3.9e-46 188.7 192 57.8
ClCG09G019610 Citrullus lanatus HOM05D005654 ORTHO05D006438 5.2e-46 188.3 186 60.2
Lalb_Chr06g0172541 Lupinus albus HOM05D005654 ORTHO05D006438 6.7e-46 188.0 192 58.9
MD10G1009400 Malus domestica HOM05D005654 ORTHO05D006438 6.7e-46 188.0 185 63.2
PGSC0003DMG400025306 Solanum tuberosum HOM05D005654 ORTHO05D006438 6.7e-46 188.0 184 61.4
TWI60G0108 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 6.7e-46 188.0 189 56.6
Gohir.A11G179400 Gossypium hirsutum HOM05D005654 ORTHO05D006438 1.1e-45 187.2 188 59.0
TAR381G0206 Trochodendron aralioides HOM05D005654 ORTHO05D006438 2.0e-45 186.4 191 57.6
CAN.G419.13 Capsicum annuum HOM05D005654 ORTHO05D006438 4.4e-45 185.3 192 57.8
Manes.01G140500 Manihot esculenta HOM05D005654 ORTHO05D006438 4.4e-45 185.3 191 55.5
Hma1.2p1_1114F.1_g258780 Hydrangea macrophylla HOM05D005654 ORTHO05D006438 5.7e-45 184.9 190 57.4
Eucgr.H02778 Eucalyptus grandis HOM05D005654 ORTHO05D006438 9.7e-45 184.1 189 57.1
GSVIVG01018856001 Vitis vinifera HOM05D005654 ORTHO05D006438 2.2e-44 183.0 186 59.7
Gorai.007G199000 Gossypium raimondii HOM05D005654 ORTHO05D006438 2.8e-44 182.6 187 57.8
CsaV3_5G027780 Cucumis sativus L. HOM05D005654 ORTHO05D006438 8.2e-44 181.0 187 58.8
Glyma.13G002400 Glycine max HOM05D005654 ORTHO05D006438 1.1e-43 180.6 191 58.1
Migut.H02503 Erythranthe guttata HOM05D005654 ORTHO05D006438 1.4e-43 180.3 184 57.1
MELO3C005244.2 Cucumis melo HOM05D005654 ORTHO05D006438 1.8e-43 179.9 187 58.3
FvH4_4g16440 Fragaria vesca HOM05D005654 ORTHO05D006438 1.8e-43 179.9 185 57.3
FAN12G4326 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.8e-43 179.9 185 57.3
Peaxi162Scf00329g00119 Petunia axillaris HOM05D005654 ORTHO05D006438 1.8e-43 179.9 187 56.1
Gohir.D11G187100 Gossypium hirsutum HOM05D005654 ORTHO05D006438 2.4e-43 179.5 187 57.2
Sed0005955 Sechium edule HOM05D005654 ORTHO05D006438 2.4e-43 179.5 183 56.8
Lj3g0016616 Lotus japonicus HOM05D005654 ORTHO05D006438 7.0e-43 177.9 191 57.1
Lj2A460T79 Lonicera japonica HOM05D005654 ORTHO05D006438 1.2e-42 177.2 184 58.2
Manes.02G099200 Manihot esculenta HOM05D005654 ORTHO05D006438 2.6e-42 176.0 189 53.4
Cc07_g10180 Coffea canephora HOM05D005654 ORTHO05D006438 4.5e-42 175.3 194 56.7
MSTRG.23266 Avicennia marina HOM05D005654 ORTHO05D006438 5.9e-42 174.9 182 54.4
Dinv33576 Davidia involucrata HOM05D005654 ORTHO05D006438 7.7e-42 174.5 179 55.3
Glyma.20G066700 Glycine max HOM05D005654 ORTHO05D006438 1.3e-41 173.7 191 57.1
Nn1g05784 Nelumbo nucifera HOM05D005654 ORTHO05D006438 3.8e-41 172.2 187 54.5
Lj5g0021075 Lotus japonicus HOM05D005654 ORTHO05D006438 1.9e-40 169.9 186 54.8
SalBow8G3171 Salvia bowleyana HOM05D005654 ORTHO05D006438 3.2e-40 169.1 183 56.3
Ca_14022_v3 Cicer arietinum L. HOM05D005654 ORTHO05D006438 7.2e-40 167.9 187 54.5
Actinidia26105 Actinidia chinensis HOM05D005654 ORTHO05D006438 9.4e-40 167.5 187 55.6
Glyma.16G220800 Glycine max HOM05D005654 ORTHO05D006438 9.4e-40 167.5 185 55.1
VMungo0331G0515 Vigna mungo HOM05D005654 ORTHO05D006438 9.4e-40 167.5 182 56.6
Phvul.010G058900 Phaseolus vulgaris HOM05D005654 ORTHO05D006438 3.6e-39 165.6 186 55.9
PSO170G2173 Papaver somniferum HOM05D005654 ORTHO05D006438 1.0e-38 164.1 187 56.7
PGR119G1083 Punica granatum HOM05D005654 ORTHO05D006438 1.8e-38 163.3 196 54.1
Lsat_1_v5_gn_9_115780 Lactuca sativa HOM05D005654 ORTHO05D006438 3.0e-38 162.5 187 54.0
Medtr8g077440 Medicago truncatula HOM05D005654 ORTHO05D006438 6.7e-38 161.4 188 54.3
PSO528G0264 Papaver somniferum HOM05D005654 ORTHO05D006438 9.7e-37 157.5 189 54.0
Oeu021744.2 Olea europaea HOM05D005654 ORTHO05D006438 1.3e-36 157.1 234 45.7
Ciclev10003765m.g Citrus clementina HOM05D005654 ORTHO05D006438 1.8e-35 153.3 130 61.5
PSO339G4156 Papaver somniferum HOM05D005654 ORTHO05D006438 1.8e-35 153.3 189 53.4
TPR.G24134 Trifolium pratense HOM05D005654 ORTHO05D006438 4.1e-35 152.1 186 52.2
Aqoxy6G01210 Aquilegia oxysepala HOM05D005654 ORTHO05D006438 9.1e-35 151.0 182 51.6
ECA248G0981 Erigeron canadensis HOM05D005654 ORTHO05D006438 1.2e-34 150.6 186 51.6
HanXRQChr10g0278901 Helianthus annuus HOM05D005654 ORTHO05D006438 2.0e-34 149.8 179 52.0
MBI01_g45163_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 3.5e-34 149.1 198 51.0
Sc18g0007030 Simmondsia chinensis HOM05D005654 ORTHO05D006438 3.5e-34 149.1 195 48.7
arahy.Tifrunner.gnm1.ann1.IV76VY Arachis hypogaea HOM05D005654 ORTHO05D006438 7.7e-34 147.9 203 46.3
Lj4A211T64 Lonicera japonica HOM05D005654 ORTHO05D006438 1.3e-33 147.1 197 49.7
Dinv33575 Davidia involucrata HOM05D005654 ORTHO05D006438 3.2e-32 142.5 120 62.5
SGA_v2.0_scaffold9G04932 Striga asiatica HOM05D005654 ORTHO05D006438 5.5e-32 141.7 127 66.1
arahy.Tifrunner.gnm1.ann1.I9PPQ0 Arachis hypogaea HOM05D005654 ORTHO05D006438 7.2e-32 141.4 188 47.3
Oeu035320.1 Olea europaea HOM05D005654 ORTHO05D006438 2.7e-31 139.4 177 49.2
CARHR160590 Cardamine hirsuta HOM05D005654 ORTHO05D006438 3.6e-31 139.0 94 74.5
CDE04G0601 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 3.0e-30 136.0 194 51.0
CDE12G0226 Ceratophyllum demersum HOM05D005654 ORTHO05D006438 5.2e-30 135.2 191 50.3
CARHR160580 Cardamine hirsuta HOM05D005654 ORTHO05D006438 1.2e-29 134.0 105 74.3
DCAR_025978 Daucus carota HOM05D005654 ORTHO05D006438 1.2e-29 134.0 190 51.1
Potri.007G018300 Populus trichocarpa HOM05D005654 ORTHO05D006438 3.4e-29 132.5 137 56.2
AUR62027117 Chenopodium quinoa HOM05D005654 ORTHO05D006438 4.4e-29 132.1 196 48.5
HPP92_013005 Vanilla planifolia HOM05D005654 ORTHO05D006438 2.8e-28 129.4 122 58.2
AUR62012893 Chenopodium quinoa HOM05D005654 ORTHO05D006438 8.3e-28 127.9 192 47.4
Hund00373 Selenicereus undatus HOM05D005654 ORTHO05D006438 3.1e-27 125.9 196 44.4
Nn5g29728 Nelumbo nucifera HOM05D005654 ORTHO05D006438 1.6e-26 123.6 135 54.1
Cpa.g.sc217.22 Carica papaya HOM05D005654 ORTHO05D006438 2.0e-26 123.2 161 47.8
FAN20G0529 Fragaria x ananassa HOM05D005654 ORTHO05D006438 2.7e-26 122.9 162 50.6
ATR0605G129 Amborella trichopoda HOM05D005654 ORTHO05D006438 6.6e-25 118.2 186 47.3
FAN24G1434 Fragaria x ananassa HOM05D005654 ORTHO05D006438 6.6e-25 118.2 164 45.7
Sed0001903 Sechium edule HOM05D005654 ORTHO05D006438 2.5e-24 116.3 188 44.7
SGA_v2.0_scaffold280G46859 Striga asiatica HOM05D005654 ORTHO05D006438 7.2e-24 114.8 130 52.3
Cfa006918 Carpinus fangiana HOM05D005654 ORTHO05D006438 3.6e-23 112.5 93 66.7
Psat0s439g0080 Pisum sativum HOM05D005654 ORTHO05D006438 1.5e-21 107.1 132 49.2
Os05g0126200 Oryza sativa ssp. japonica HOM05D005654 ORTHO05D006438 2.6e-21 106.3 171 47.4
TWI09G1445 Tripterygium wilfordii HOM05D005654 ORTHO05D006438 2.6e-21 106.3 89 67.4
Zm00001eb265250 Zea mays HOM05D005654 ORTHO05D006438 1.3e-20 104.0 180 40.6
Psat2g190960 Pisum sativum HOM05D005654 ORTHO05D006438 1.7e-20 103.6 127 49.6
Rhsim08G0123600 Rhododendron simsii HOM05D005654 ORTHO05D006438 2.8e-20 102.8 191 43.5
Ah.08g209860 Amaranthus hybridus HOM05D005654 ORTHO05D006438 1.1e-19 100.9 142 44.4
EL10Ac9g22080 Beta vulgaris HOM05D005654 ORTHO05D006438 2.0e-18 96.7 248 34.3
unitig_747.g21954 Utricularia gibba HOM05D005654 ORTHO05D006438 1.4e-14 84.0 114 43.9
Zm00001eb414250 Zea mays HOM05D005654 ORTHO05D006438 3.1e-14 82.8 95 51.6
SEGI_21166 Sequoiadendron giganteum HOM05D005654 ORTHO05D006438 1.5e-13 80.5 127 39.4
Lalb_Chr02g0154671 Lupinus albus HOM05D005654 ORTHO05D006438 4.1e-11 72.4 90 46.7
Zm00001eb355020 Zea mays HOM05D005654 ORTHO05D006438 4.1e-11 72.4 97 47.4
FAN15G1271 Fragaria x ananassa HOM05D005654 ORTHO05D006438 1.2e-10 70.9 63 65.1
SHI03481 Sapria himalayana HOM05D005654 ORTHO05D006438 1.3e-09 67.4 105 44.8
Zm00001eb035810 Zea mays HOM05D005654 ORTHO05D006438 1.5e-08 63.9 75 50.7
SHI05467 Sapria himalayana HOM05D005654 ORTHO05D006438 1.6e-07 60.5 67 55.2
MBI01_g11791_MAGBIO Magnolia biondii HOM05D005654 ORTHO05D006438 3.6e-07 59.3 146 36.3
Zm00001eb078300 Zea mays HOM05D000349 ORTHO05D010734 4.7e-07 58.9 92 42.4
Zm00001eb309330 Zea mays HOM05D000349 ORTHO05D006438 4.7e-07 58.9 92 42.4


User provided reference genes

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