Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00444 Brassica carinata HOM05D004075 ORTHO05D004538 3.3e-60 235.3 165 100.0
BraA09t39980Z Brassica rapa HOM05D004075 ORTHO05D004538 6.8e-50 201.1 165 76.4
BolC8t50355H Brassica oleracea HOM05D004075 ORTHO05D004538 3.4e-49 198.7 166 79.5
A09p45170 Brassica napus HOM05D004075 ORTHO05D004538 7.5e-49 197.6 165 75.2
BcaB01g00440 Brassica carinata HOM05D004075 ORTHO05D004538 2.2e-48 196.1 166 75.9
BcaNung06093 Brassica carinata HOM05D004075 ORTHO05D004538 2.2e-48 196.1 166 75.9
C08p27380 Brassica napus HOM05D004075 ORTHO05D004538 2.2e-48 196.1 166 75.9
Sp5g10180 Schrenkiella parvula HOM05D004075 ORTHO05D004538 2.5e-44 182.6 170 78.8
BcaB02g08587 Brassica carinata HOM05D004075 ORTHO05D004538 2.1e-38 162.9 170 68.8
AL5G32670 Arabidopsis lyrata HOM05D004075 ORTHO05D004538 1.3e-37 160.2 165 74.5
Carub.0005s1844 Capsella rubella HOM05D004075 ORTHO05D004538 1.7e-37 159.8 165 71.5
C04p40860 Brassica napus HOM05D004075 ORTHO05D004538 1.1e-36 157.1 170 75.3
BolC4t25672H Brassica oleracea HOM05D004075 ORTHO05D004538 1.1e-36 157.1 170 75.3
AT3G52110 Arabidopsis thaliana HOM05D004075 ORTHO05D004538 3.3e-36 155.6 165 73.3
BraA04t16422Z Brassica rapa HOM05D004075 ORTHO05D004538 7.3e-36 154.5 172 64.5
BcaC02g09281 Brassica carinata HOM05D004075 ORTHO05D004538 1.2e-35 153.7 170 73.5
A04p07270 Brassica napus HOM05D004075 ORTHO05D004538 6.2e-35 151.4 173 63.6
CARHR161820 Cardamine hirsuta HOM05D004075 ORTHO05D004538 2.6e-33 146.0 166 63.9
Aa31LG10G7190 Aethionema arabicum HOM05D004075 ORTHO05D004538 1.2e-30 137.1 165 58.8
THA.LOC104819075 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.8e-19 99.4 174 48.3
Cpa.g.sc245.12 Carica papaya HOM05D004075 ORTHO05D004538 1.4e-18 97.1 176 40.3
vmacro13660 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 1.7e-16 90.1 180 35.6
Thhalv10010636m.g Eutrema salsugineum HOM05D004075 ORTHO05D004538 3.8e-16 89.0 61 80.3
Sabra09G0045700 Salix brachista HOM05D004075 ORTHO05D004538 3.8e-16 89.0 175 40.6
Lj9A631T51 Lonicera japonica HOM05D004075 ORTHO05D004538 6.4e-16 88.2 176 36.4
HanXRQChr03g0065861 Helianthus annuus HOM05D004075 ORTHO05D004538 5.5e-15 85.1 172 34.9
Potri.001G267600 Populus trichocarpa HOM05D004075 ORTHO05D004538 5.5e-15 85.1 174 41.4
QL04p006698 Quercus lobata HOM05D004075 ORTHO05D004538 9.3e-15 84.3 177 36.7
QL04p007893 Quercus lobata HOM05D004075 ORTHO05D004538 9.3e-15 84.3 177 37.9
Thecc.01G411500 Theobroma cacao HOM05D004075 ORTHO05D004538 1.2e-14 84.0 177 36.2
CSS0023689 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 2.7e-14 82.8 180 35.0
CiPaw.13G003900 Carya illinoinensis HOM05D004075 ORTHO05D004538 2.7e-14 82.8 176 34.1
Ciclev10031906m.g Citrus clementina HOM05D004075 ORTHO05D004538 3.5e-14 82.4 172 37.2
VMungo1080G0731 Vigna mungo HOM05D004075 ORTHO05D004538 4.6e-14 82.0 173 34.7
Phvul.005G020800 Phaseolus vulgaris HOM05D004075 ORTHO05D004538 1.0e-13 80.9 175 33.1
Cc02_g27890 Coffea canephora HOM05D004075 ORTHO05D004538 1.3e-13 80.5 181 34.3
CSS0027632 Camellia sinensis var. sinensis HOM05D004075 ORTHO05D004538 1.8e-13 80.1 180 34.4
Migut.O00687 Erythranthe guttata HOM05D004075 ORTHO05D004538 1.8e-13 80.1 186 32.8
Manes.10G143700 Manihot esculenta HOM05D004075 ORTHO05D004538 3.9e-13 79.0 175 37.7
Migut.N01589 Erythranthe guttata HOM05D004075 ORTHO05D004538 5.1e-13 78.6 184 32.6
Eucgr.J01269 Eucalyptus grandis HOM05D004075 ORTHO05D004538 5.1e-13 78.6 175 34.9
Peaxi162Scf00428g00317 Petunia axillaris HOM05D004075 ORTHO05D004538 6.7e-13 78.2 183 32.2
Glyma.08G155000 Glycine max HOM05D004075 ORTHO05D004538 1.1e-12 77.4 175 33.1
Dinv43449 Davidia involucrata HOM05D004075 ORTHO05D004538 1.5e-12 77.0 179 34.1
ECA240G2351 Erigeron canadensis HOM05D004075 ORTHO05D004538 1.5e-12 77.0 177 33.3
Rhsim07G0055100 Rhododendron simsii HOM05D004075 ORTHO05D004538 2.5e-12 76.3 180 35.0
Duzib268G0178 Durio zibethinus HOM05D004075 ORTHO05D004538 3.3e-12 75.9 181 34.8
Oeu047570.1 Olea europaea HOM05D004075 ORTHO05D004538 4.3e-12 75.5 179 45.3
Oeu063166.1 Olea europaea HOM05D004075 ORTHO05D004538 4.3e-12 75.5 179 34.6
Oeu063168.1 Olea europaea HOM05D004075 ORTHO05D004538 4.3e-12 75.5 179 34.6
arahy.Tifrunner.gnm1.ann1.J4WSSI Arachis hypogaea HOM05D004075 ORTHO05D004538 7.4e-12 74.7 178 32.6
Psat5g204000 Pisum sativum HOM05D004075 ORTHO05D004538 9.6e-12 74.3 163 32.5
Actinidia21555 Actinidia chinensis HOM05D004075 ORTHO05D004538 1.6e-11 73.6 179 31.8
Hma1.2p1_0293F.1_g116200 Hydrangea macrophylla HOM05D004075 ORTHO05D004538 1.6e-11 73.6 182 36.8
Prupe.2G012400 Prunus persica HOM05D004075 ORTHO05D004538 1.6e-11 73.6 153 32.7
THA.LOC104826677 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 2.1e-11 73.2 164 33.5
TWI53G1782 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 2.1e-11 73.2 177 33.9
FAN01G1840 Fragaria x ananassa HOM05D004075 ORTHO05D004538 2.8e-11 72.8 164 34.1
PGSC0003DMG400006871 Solanum tuberosum HOM05D004075 ORTHO05D004538 2.8e-11 72.8 188 32.4
CARHR117420 Cardamine hirsuta HOM05D001890 ORTHO05D004538 3.7e-11 72.4 53 73.6
Glyma.15G273700 Glycine max HOM05D004075 ORTHO05D004538 4.8e-11 72.0 177 32.2
arahy.Tifrunner.gnm1.ann1.N8UE6G Arachis hypogaea HOM05D004075 ORTHO05D004538 6.2e-11 71.6 183 31.7
FvH4_7g00980 Fragaria vesca HOM05D004075 ORTHO05D004538 8.1e-11 71.2 164 33.5
THA.LOC104817133 Tarenaya hassleriana HOM05D004075 ORTHO05D004538 1.4e-10 70.5 121 43.8
RcHm_v2.0_Chr1g0315881 Rosa chinensis HOM05D004075 ORTHO05D004538 2.4e-10 69.7 172 33.7
CAN.G1820.5 Capsicum annuum HOM05D004075 ORTHO05D004538 3.1e-10 69.3 183 31.7
TAR636G2153 Trochodendron aralioides HOM05D004075 ORTHO05D004538 4.0e-10 68.9 185 32.4
GSVIVG01032083001 Vitis vinifera HOM05D004075 ORTHO05D004538 4.0e-10 68.9 175 30.9
SalBow6G5115 Salvia bowleyana HOM05D004075 ORTHO05D004538 5.3e-10 68.6 167 33.5
MD07G1009400 Malus domestica HOM05D004075 ORTHO05D004538 6.9e-10 68.2 156 34.6
SalBow8G1917 Salvia bowleyana HOM05D004075 ORTHO05D004538 6.9e-10 68.2 166 33.1
PGR031G2189 Punica granatum HOM05D004075 ORTHO05D004538 1.2e-09 67.4 170 30.0
Medtr3g028600 Medicago truncatula HOM05D004075 ORTHO05D004538 2.0e-09 66.6 169 30.2
Potri.009G061900 Populus trichocarpa HOM05D004075 ORTHO05D004538 2.0e-09 66.6 78 50.0
Lj3g0017759 Lotus japonicus HOM05D004075 ORTHO05D004538 2.6e-09 66.2 176 31.2
TWI73G1281 Tripterygium wilfordii HOM05D004075 ORTHO05D004538 4.5e-09 65.5 182 31.3
MD02G1313000 Malus domestica HOM05D004075 ORTHO05D004538 5.8e-09 65.1 151 32.5
Nitab4.5_0000634g0160 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.0e-08 64.3 187 36.9
Nitab4.5_0002477g0020 Nicotiana tabacum HOM05D004075 ORTHO05D004538 1.0e-08 64.3 188 37.8
Ca_26459_v3 Cicer arietinum L. HOM05D004075 ORTHO05D004538 2.2e-08 63.2 170 30.0
PSO384G3961 Papaver somniferum HOM05D004075 ORTHO05D004538 2.2e-08 63.2 192 28.1
Gorai.004G172900 Gossypium raimondii HOM05D004075 ORTHO05D004538 2.9e-08 62.8 187 33.2
Lalb_Chr25g0283121 Lupinus albus HOM05D004075 ORTHO05D004538 2.9e-08 62.8 176 28.4
Actinidia20669 Actinidia chinensis HOM05D004075 ORTHO05D004538 3.8e-08 62.4 134 35.1
MSTRG.28073 Avicennia marina HOM05D004075 ORTHO05D004538 4.9e-08 62.0 181 30.4
Gohir.A08G144800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 4.9e-08 62.0 186 33.3
PSO339G0483 Papaver somniferum HOM05D004075 ORTHO05D004538 4.9e-08 62.0 194 28.9
vmacro21184 Vaccinium macrocarpon HOM05D004075 ORTHO05D004538 4.9e-08 62.0 132 35.6
HanXRQChr13g0420751 Helianthus annuus HOM05D004075 ORTHO05D004538 6.5e-08 61.6 173 30.1
Dinv09359 Davidia involucrata HOM05D004075 ORTHO05D004538 1.1e-07 60.8 132 33.3
AUR62023061 Chenopodium quinoa HOM05D004075 ORTHO05D004538 1.4e-07 60.5 179 30.2
Gohir.D08G165800 Gossypium hirsutum HOM05D004075 ORTHO05D004538 1.4e-07 60.5 178 34.8
FAN03G2231 Fragaria x ananassa HOM05D004075 ORTHO05D004538 1.9e-07 60.1 106 38.7
CsaV3_7G031100 Cucumis sativus L. HOM05D004075 ORTHO05D004538 3.2e-07 59.3 172 30.8
Atru.chr11.2656 Acer truncatum HOM05D004075 ORTHO05D004538 4.2e-07 58.9 178 35.4
FAN10G0771 Fragaria x ananassa HOM05D004075 ORTHO05D004538 5.5e-07 58.5 106 36.8
MSTRG.5020 Avicennia marina HOM05D004075 ORTHO05D004538 7.1e-07 58.2 181 26.5
AUR62009380 Chenopodium quinoa HOM05D004075 ORTHO05D004538 7.1e-07 58.2 177 29.9
ClCG09G004200 Citrullus lanatus HOM05D004075 ORTHO05D004538 7.1e-07 58.2 176 29.5
FAN06G1907 Fragaria x ananassa HOM05D004075 ORTHO05D004538 7.1e-07 58.2 106 36.8
SGA_v2.0_scaffold5G02972 Striga asiatica HOM05D004075 ORTHO05D004538 7.1e-07 58.2 173 31.2
DCAR_029668 Daucus carota HOM05D004075 ORTHO05D004538 1.2e-06 57.4 194 29.9
COL.COLO4_23930 Corchorus olitorius HOM05D004075 ORTHO05D004538 2.7e-06 56.2 180 32.2
Lsat_1_v5_gn_9_117060 Lactuca sativa HOM05D004075 ORTHO05D004538 2.7e-06 56.2 133 36.1
Sed0000159 Sechium edule HOM05D004075 ORTHO05D004538 6.0e-06 55.1 84 42.9
TPR.G32989 Trifolium pratense HOM05D004075 ORTHO05D004538 6.0e-06 55.1 162 29.6
Sc11g0009230 Simmondsia chinensis HOM05D004075 ORTHO05D004538 7.9e-06 54.7 109 34.9


User provided reference genes

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