Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00434 Brassica carinata HOM05D003671 ORTHO05D004285 0.0e+00 1480.3 787 100.0
C08p26830 Brassica napus HOM05D003671 ORTHO05D004285 0.0e+00 1295.4 794 88.5
BolC8t50298H Brassica oleracea HOM05D003671 ORTHO05D004285 0.0e+00 1284.6 831 85.7
A09p44750 Brassica napus HOM05D003671 ORTHO05D004285 0.0e+00 1267.7 831 84.8
BraA09t39936Z Brassica rapa HOM05D003671 ORTHO05D004285 0.0e+00 1258.8 834 84.4
BcaB01g00433 Brassica carinata HOM05D003671 ORTHO05D004285 0.0e+00 1234.6 805 84.8
BcaB01g00498 Brassica carinata HOM05D003671 ORTHO05D004285 0.0e+00 1232.6 805 84.7
BolC8t50300H Brassica oleracea HOM05D003671 ORTHO05D004285 0.0e+00 1228.4 805 84.1
C08p26840 Brassica napus HOM05D003671 ORTHO05D004285 0.0e+00 1210.3 794 84.5
BraA09t39938Z Brassica rapa HOM05D003671 ORTHO05D004285 0.0e+00 1207.2 805 83.4
A09p44780 Brassica napus HOM05D003671 ORTHO05D004285 0.0e+00 1199.1 794 83.8
AT3G51640 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 0.0e+00 1142.5 845 76.1
AT3G51650 Arabidopsis thaliana HOM05D003671 ORTHO05D004285 0.0e+00 1137.9 844 75.2
AL5G32090 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 0.0e+00 1093.6 827 75.2
Thhalv10016251m.g Eutrema salsugineum HOM05D003671 ORTHO05D004285 9.5e-267 923.7 847 66.5
Carub.0004s2047 Capsella rubella HOM05D003671 ORTHO05D004285 8.0e-266 920.6 848 65.4
THA.LOC104806637 Tarenaya hassleriana HOM05D003671 ORTHO05D004285 4.6e-261 904.8 821 65.9
Aa31LG5G23820 Aethionema arabicum HOM05D003671 ORTHO05D004285 8.1e-258 894.0 855 64.3
AL4G35770 Arabidopsis lyrata HOM05D003671 ORTHO05D004285 4.9e-255 884.8 833 64.6
CARHR161250 Cardamine hirsuta HOM05D003671 ORTHO05D004285 7.8e-253 877.5 733 70.8
Sp4g20820 Schrenkiella parvula HOM05D003671 ORTHO05D004285 5.6e-251 871.3 804 65.8
CARHR133180 Cardamine hirsuta HOM05D003671 ORTHO05D004285 8.1e-250 867.5 833 64.8
Thecc.04G154700 Theobroma cacao HOM05D003671 ORTHO05D004285 7.2e-206 721.5 898 52.9
Manes.09G116100 Manihot esculenta HOM05D003671 ORTHO05D004285 1.1e-203 714.1 896 52.1
Manes.09G115800 Manihot esculenta HOM05D003671 ORTHO05D004285 1.5e-203 713.8 896 53.3
COL.COLO4_30007 Corchorus olitorius HOM05D003671 ORTHO05D004285 6.9e-201 704.9 896 53.5
Duzib212G0018 Durio zibethinus HOM05D003671 ORTHO05D004285 2.5e-198 696.4 901 52.5
Prupe.6G290600 Prunus persica HOM05D003671 ORTHO05D004285 5.5e-198 695.3 898 50.9
Duzib151G0206 Durio zibethinus HOM05D003671 ORTHO05D004285 3.9e-196 689.1 900 51.9
Potri.006G107500 Populus trichocarpa HOM05D003671 ORTHO05D004285 4.4e-195 685.6 884 52.0
RcHm_v2.0_Chr3g0460911 Rosa chinensis HOM05D003671 ORTHO05D004285 9.7e-195 684.5 898 51.2
Ciclev10011037m.g Citrus clementina HOM05D003671 ORTHO05D004285 6.3e-194 681.8 875 52.2
FAN05G5788 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.8e-193 680.2 894 50.1
FAN05G3119 Fragaria x ananassa HOM05D003671 ORTHO05D004285 4.1e-193 679.1 896 50.0
Atru.chr8.2376 Acer truncatum HOM05D003671 ORTHO05D004285 5.3e-193 678.7 893 52.4
Gorai.005G122800 Gossypium raimondii HOM05D003671 ORTHO05D004285 2.0e-187 660.2 856 50.6
Sabra06G0083600 Salix brachista HOM05D003671 ORTHO05D004285 2.0e-187 660.2 881 50.3
Cfa017060 Carpinus fangiana HOM05D003671 ORTHO05D004285 7.4e-187 658.3 886 51.5
QL07p032733 Quercus lobata HOM05D003671 ORTHO05D004285 7.4e-187 658.3 856 52.6
Sabra04G0151200 Salix brachista HOM05D003671 ORTHO05D004285 7.4e-187 658.3 888 51.2
MD12G1185300 Malus domestica HOM05D003671 ORTHO05D004285 1.3e-186 657.5 890 48.9
Cpa.g.sc86.30 Carica papaya HOM05D003671 ORTHO05D004285 1.1e-185 654.4 787 55.4
Dinv25318 Davidia involucrata HOM05D003671 ORTHO05D004285 7.7e-184 648.3 898 48.4
FvH4_6g10170 Fragaria vesca HOM05D003671 ORTHO05D004285 1.7e-183 647.1 894 49.8
FAN14G5445 Fragaria x ananassa HOM05D003671 ORTHO05D004285 1.1e-182 644.4 894 49.7
TWI77G0322 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.5e-182 644.0 894 50.3
Potri.016G133700 Populus trichocarpa HOM05D003671 ORTHO05D004285 2.7e-181 639.8 875 49.6
CSS0037141 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 4.7e-181 639.0 893 48.6
CSS0036424 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 8.0e-181 638.3 893 48.5
Hma1.2p1_1052F.1_g252340 Hydrangea macrophylla HOM05D003671 ORTHO05D004285 1.5e-179 634.0 902 49.7
Actinidia29047 Actinidia chinensis HOM05D003671 ORTHO05D004285 2.6e-179 633.3 895 49.2
Lalb_Chr03g0043701 Lupinus albus HOM05D003671 ORTHO05D004285 9.7e-179 631.3 886 50.5
Gohir.A03G088100 Gossypium hirsutum HOM05D003671 ORTHO05D004285 2.2e-178 630.2 870 50.6
Ca_07750_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 2.4e-177 626.7 839 50.1
FAN09G2383 Fragaria x ananassa HOM05D003671 ORTHO05D004285 9.1e-177 624.8 891 49.3
Glyma.18G211200 Glycine max HOM05D003671 ORTHO05D004285 3.5e-176 622.9 894 49.3
Gohir.A03G087500 Gossypium hirsutum HOM05D003671 ORTHO05D004285 4.5e-176 622.5 857 50.5
CANSAT35G0504 Cannabis sativa HOM05D003671 ORTHO05D004285 1.7e-175 620.5 895 49.4
Actinidia11522 Actinidia chinensis HOM05D003671 ORTHO05D004285 2.2e-175 620.2 898 46.9
Gohir.D02G108300 Gossypium hirsutum HOM05D003671 ORTHO05D004285 2.2e-175 620.2 870 50.6
Rhsim05G0229100 Rhododendron simsii HOM05D003671 ORTHO05D004285 3.8e-175 619.4 904 46.7
FAN02G1273 Fragaria x ananassa HOM05D003671 ORTHO05D004285 5.0e-175 619.0 886 49.7
CsaV3_3G033210 Cucumis sativus L. HOM05D003671 ORTHO05D004285 6.5e-175 618.6 900 48.9
Gorai.005G122900 Gossypium raimondii HOM05D003671 ORTHO05D004285 6.5e-175 618.6 870 50.6
Lj1g0018847 Lotus japonicus HOM05D003671 ORTHO05D004285 6.5e-175 618.6 889 48.1
CiPaw.10G164200 Carya illinoinensis HOM05D003671 ORTHO05D004285 8.5e-175 618.2 852 49.8
MELO3C009114.2 Cucumis melo HOM05D003671 ORTHO05D004285 1.9e-174 617.1 902 48.7
TWI74G1343 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 2.5e-174 616.7 895 47.9
PGR004G1797 Punica granatum HOM05D003671 ORTHO05D004285 7.2e-174 615.1 870 48.7
arahy.Tifrunner.gnm1.ann1.616PIC Arachis hypogaea HOM05D003671 ORTHO05D004285 1.2e-173 614.4 929 48.1
Glyma.09G277700 Glycine max HOM05D003671 ORTHO05D004285 1.6e-173 614.0 896 48.8
arahy.Tifrunner.gnm1.ann1.8XV151 Arachis hypogaea HOM05D003671 ORTHO05D004285 2.1e-173 613.6 929 48.1
vmacro20357 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 2.7e-173 613.2 873 47.2
Dinv11386 Davidia involucrata HOM05D003671 ORTHO05D004285 3.6e-173 612.8 773 52.3
TAR636G0316 Trochodendron aralioides HOM05D003671 ORTHO05D004285 6.1e-173 612.1 903 48.5
Psat0s1450g0040 Pisum sativum HOM05D003671 ORTHO05D004285 1.0e-172 611.3 898 48.8
Medtr7g072590 Medicago truncatula HOM05D003671 ORTHO05D004285 1.8e-172 610.5 839 49.6
TAR636G3051 Trochodendron aralioides HOM05D003671 ORTHO05D004285 1.8e-172 610.5 903 48.5
CSS0031435 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 1.2e-171 607.8 900 47.1
CSS0025205 Camellia sinensis var. sinensis HOM05D003671 ORTHO05D004285 2.0e-171 607.1 900 47.1
Glyma.18G212400 Glycine max HOM05D003671 ORTHO05D004285 2.6e-171 606.7 889 48.7
Lalb_Chr01g0023661 Lupinus albus HOM05D003671 ORTHO05D004285 1.3e-170 604.4 884 48.4
Eucgr.K01274 Eucalyptus grandis HOM05D003671 ORTHO05D004285 2.2e-170 603.6 877 47.3
ClCG10G022620 Citrullus lanatus HOM05D003671 ORTHO05D004285 3.7e-170 602.8 886 48.6
TPR.G4424 Trifolium pratense HOM05D003671 ORTHO05D004285 8.3e-170 601.7 867 49.9
Glyma.09G277602 Glycine max HOM05D003671 ORTHO05D004285 1.4e-169 600.9 875 49.9
MD04G1172000 Malus domestica HOM05D003671 ORTHO05D004285 1.8e-169 600.5 873 48.7
Lalb_Chr07g0190641 Lupinus albus HOM05D003671 ORTHO05D004285 1.6e-168 597.4 874 49.2
Lalb_Chr19g0124051 Lupinus albus HOM05D003671 ORTHO05D004285 1.5e-166 590.9 889 47.9
TWI53G1222 Tripterygium wilfordii HOM05D003671 ORTHO05D004285 1.9e-166 590.5 875 48.9
TAR633G2716 Trochodendron aralioides HOM05D003671 ORTHO05D004285 9.5e-166 588.2 904 45.9
Medtr7g072520 Medicago truncatula HOM05D003671 ORTHO05D004285 6.1e-165 585.5 880 48.0
Sed0011007 Sechium edule HOM05D003671 ORTHO05D004285 1.0e-164 584.7 906 46.0
Ca_07746_v3 Cicer arietinum L. HOM05D003671 ORTHO05D004285 3.0e-164 583.2 892 46.6
Phvul.008G084400 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 3.4e-163 579.7 895 47.6
Phvul.008G084500 Phaseolus vulgaris HOM05D003671 ORTHO05D004285 4.4e-163 579.3 895 47.5
MSTRG.18954 Avicennia marina HOM05D003671 ORTHO05D004285 1.7e-162 577.4 884 47.6
Lj3C942T7 Lonicera japonica HOM05D003671 ORTHO05D004285 1.4e-161 574.3 847 47.3
Rhsim04G0122600 Rhododendron simsii HOM05D003671 ORTHO05D004285 3.1e-161 573.2 892 45.7
VMungo1383G1272 Vigna mungo HOM05D003671 ORTHO05D004285 1.3e-159 567.8 859 48.0
MSTRG.5514 Avicennia marina HOM05D003671 ORTHO05D004285 1.5e-158 564.3 886 46.7
Migut.J00060 Erythranthe guttata HOM05D003671 ORTHO05D004285 6.1e-157 558.9 854 47.0
Lj1g0001828 Lotus japonicus HOM05D003671 ORTHO05D004285 1.7e-154 550.8 896 46.4
Nn2g10354 Nelumbo nucifera HOM05D003671 ORTHO05D004285 1.7e-154 550.8 903 45.7
EL10Ac7g17060 Beta vulgaris HOM05D003671 ORTHO05D004285 2.2e-154 550.4 899 46.7
Cc06_g00530 Coffea canephora HOM05D003671 ORTHO05D004285 1.9e-153 547.4 880 45.1
Hund03740 Selenicereus undatus HOM05D003671 ORTHO05D004285 3.5e-152 543.1 897 43.8
SGA_v2.0_scaffold85G26648 Striga asiatica HOM05D003671 ORTHO05D004285 3.5e-152 543.1 893 45.0
ECA247G1347 Erigeron canadensis HOM05D003671 ORTHO05D004285 4.6e-152 542.7 864 45.7
CiPaw.09G218900 Carya illinoinensis HOM05D003671 ORTHO05D004285 1.0e-151 541.6 890 44.9
SGA_v2.0_scaffold373G50172 Striga asiatica HOM05D003671 ORTHO05D004285 1.7e-151 540.8 885 47.0
Ah.08g209720 Amaranthus hybridus HOM05D003671 ORTHO05D004285 2.3e-151 540.4 907 45.9
MBI15_g31431_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.9e-150 537.3 911 44.7
SpUn1372_0010 Schrenkiella parvula HOM05D003671 ORTHO05D004285 2.5e-150 537.0 395 77.7
AUR62029686 Chenopodium quinoa HOM05D003671 ORTHO05D004285 4.0e-148 529.6 867 46.8
DCAR_010961 Daucus carota HOM05D003671 ORTHO05D004285 1.2e-147 528.1 833 43.2
Haze_21142 Corylus avellana HOM05D003671 ORTHO05D004285 2.9e-146 523.5 790 48.2
Oeu026963.1 Olea europaea HOM05D003671 ORTHO05D004285 2.9e-146 523.5 837 46.4
Sc07g0005760 Simmondsia chinensis HOM05D003671 ORTHO05D004285 2.9e-146 523.5 898 45.9
Haze_21147 Corylus avellana HOM05D003671 ORTHO05D004285 1.1e-145 521.5 790 48.1
Nitab4.5_0007794g0010 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.7e-143 514.2 890 45.2
Peaxi162Scf00595g00423 Petunia axillaris HOM05D003671 ORTHO05D004285 3.9e-143 513.1 881 44.9
vmacro08928 Vaccinium macrocarpon HOM05D003671 ORTHO05D004285 4.7e-141 506.1 857 43.8
Psat3g120920 Pisum sativum HOM05D003671 ORTHO05D004285 4.4e-139 499.6 799 46.3
Nitab4.5_0002348g0020 Nicotiana tabacum HOM05D003671 ORTHO05D004285 1.1e-137 495.0 894 45.0
CAN.G604.1 Capsicum annuum HOM05D003671 ORTHO05D004285 1.9e-137 494.2 894 42.2
Nitab4.5_0002204g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 2.7e-136 490.3 859 45.8
PGSC0003DMG400013061 Solanum tuberosum HOM05D003671 ORTHO05D004285 2.7e-136 490.3 875 44.9
Nitab4.5_0000126g0070 Nicotiana tabacum HOM05D003671 ORTHO05D004285 2.5e-134 483.8 859 45.2
Sopen09g011320 Solanum pennellii HOM05D003671 ORTHO05D004285 4.7e-133 479.6 874 44.6
Solyc09g018310.4 Solanum lycopersicum HOM05D003671 ORTHO05D004285 2.4e-132 477.2 880 44.0
CAN.G15.24 Capsicum annuum HOM05D003671 ORTHO05D004285 1.5e-131 474.6 836 44.5
Aqoxy2G00724 Aquilegia oxysepala HOM05D003671 ORTHO05D004285 5.8e-131 472.6 895 41.3
PSO339G1890 Papaver somniferum HOM05D003671 ORTHO05D004285 1.5e-126 458.0 893 41.2
Gohir.D02G108200 Gossypium hirsutum HOM05D003671 ORTHO05D004285 9.6e-126 455.3 738 45.1
Oeu060440.1 Olea europaea HOM05D003671 ORTHO05D004285 6.2e-125 452.6 841 44.4
PSO384G1707 Papaver somniferum HOM05D003671 ORTHO05D004285 1.1e-124 451.8 892 41.0
MBI03_g38977_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 1.7e-122 444.5 760 45.0
DCAR_021427 Daucus carota HOM05D003671 ORTHO05D004285 1.4e-121 441.4 843 41.0
Oeu060446.2 Olea europaea HOM05D003671 ORTHO05D004285 9.3e-121 438.7 915 41.6
AUR62006358 Chenopodium quinoa HOM05D003671 ORTHO05D004285 2.4e-113 414.1 764 44.4
Lsat_1_v5_gn_8_119680 Lactuca sativa HOM05D003671 ORTHO05D004285 4.2e-113 413.3 696 42.7
Sp5g10620 Schrenkiella parvula HOM05D003671 ORTHO05D004285 1.1e-110 405.2 299 73.9
HanXRQChr16g0510341 Helianthus annuus HOM05D003671 ORTHO05D004285 8.4e-106 389.0 793 40.7
Psat3g121000 Pisum sativum HOM05D003671 ORTHO05D004285 2.5e-105 387.5 731 43.0
ECA236G1062 Erigeron canadensis HOM05D003671 ORTHO05D004285 1.2e-104 385.2 821 40.2
GSVIVG01030211001 Vitis vinifera HOM05D003671 ORTHO05D004285 3.9e-103 380.2 709 44.7
unitig_699.g19370 Utricularia gibba HOM05D003671 ORTHO05D004285 5.1e-103 379.8 769 41.6
HanXRQChr16g0510331 Helianthus annuus HOM05D003671 ORTHO05D004285 2.1e-101 374.4 694 43.2
HPP92_018092 Vanilla planifolia HOM05D003671 ORTHO05D004285 6.2e-101 372.9 715 42.8
Zm00001eb195220 Zea mays HOM05D003671 ORTHO05D004285 1.3e-98 365.2 846 39.0
Zm00001eb406310 Zea mays HOM05D003671 ORTHO05D004285 3.0e-95 354.0 839 38.7
PSO675G2859 Papaver somniferum HOM05D003671 ORTHO05D004285 1.9e-94 351.3 827 38.2
CDE07G1826 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 4.3e-94 350.1 772 40.3
Zm00001eb163960 Zea mays HOM05D003671 ORTHO05D004285 1.1e-92 345.5 844 38.7
Sed0014254 Sechium edule HOM05D003671 ORTHO05D004285 6.9e-92 342.8 438 54.6
CDE04G0380 Ceratophyllum demersum HOM05D003671 ORTHO05D004285 1.3e-90 338.6 713 40.5
PSO541G0005 Papaver somniferum HOM05D003671 ORTHO05D004285 3.2e-89 334.0 815 34.8
Os12g0112600 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 2.8e-85 320.9 858 37.1
TPR.G4425 Trifolium pratense HOM05D003671 ORTHO05D004285 3.7e-85 320.5 760 39.3
Os11g0113200 Oryza sativa ssp. japonica HOM05D003671 ORTHO05D004285 4.8e-85 320.1 854 37.4
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 6.1e-72 276.6 806 34.0
Peaxi162Scf00732g00447 Petunia axillaris HOM05D003671 ORTHO05D004285 1.1e-70 272.3 854 36.1
AagrBONN_evm.TU.Sc2ySwM_344.630 Anthoceros agrestis HOM05D003671 ORTHO05D004285 2.2e-61 241.5 347 42.7
SEGI_37069 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 2.8e-61 241.1 961 30.0
Mapoly0100s0047 Marchantia polymorpha HOM05D003671 ORTHO05D004285 4.2e-57 227.3 357 40.3
SEGI_27030 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 9.4e-57 226.1 296 45.6
ATR0012G011 Amborella trichopoda HOM05D003671 ORTHO05D004285 2.7e-56 224.6 791 31.1
ATR0681G108 Amborella trichopoda HOM05D003671 ORTHO05D004285 7.5e-54 216.5 425 40.5
SEGI_23390 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 3.7e-53 214.2 297 45.5
Pp3c12_1780 Physcomitrium patens HOM05D003671 ORTHO05D004285 3.8e-50 204.1 360 38.1
Nn5g26901 Nelumbo nucifera HOM05D003671 ORTHO05D004285 2.8e-48 198.0 635 36.9
CAN.G179.38 Capsicum annuum HOM05D003671 ORTHO05D004285 5.7e-46 190.3 213 51.6
SEGI_35920 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 2.2e-45 188.3 175 54.3
SEGI_38845 Sequoiadendron giganteum HOM05D003671 ORTHO05D004285 2.8e-45 188.0 263 43.3
TPR.G35754 Trifolium pratense HOM05D003671 ORTHO05D004285 3.6e-40 171.0 97 88.7
MBI03_g10316_MAGBIO Magnolia biondii HOM05D003671 ORTHO05D004285 2.6e-38 164.9 109 76.1
Oeu060441.1 Olea europaea HOM05D003671 ORTHO05D004285 9.5e-33 146.4 369 34.7
Oeu026958.1 Olea europaea HOM05D003671 ORTHO05D004285 6.2e-32 143.7 461 33.8
VMungo1383G0904 Vigna mungo HOM05D003671 ORTHO05D004285 7.5e-30 136.7 307 35.2
Sc02g0000840 Simmondsia chinensis HOM05D003671 ORTHO05D004285 6.4e-29 133.7 325 33.8
Haze_23239 Corylus avellana HOM05D003671 ORTHO05D004285 9.6e-17 93.2 263 43.7
ATR0681G103 Amborella trichopoda HOM05D003671 ORTHO05D004285 3.9e-10 71.2 203 31.5


User provided reference genes

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