Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 6.9e-59 230.3 109 100.0
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 2.2e-41 172.2 103 78.6
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 3.8e-41 171.4 103 78.6
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 3.8e-41 171.4 103 79.6
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 3.8e-41 171.4 103 79.6
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 1.1e-40 169.9 103 78.6
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 1.9e-40 169.1 104 78.8
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 3.2e-40 168.3 103 77.7
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 4.2e-40 167.9 104 78.8
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 9.4e-40 166.8 104 77.9
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 3.6e-39 164.9 103 76.7
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 6.1e-39 164.1 103 76.7
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 4.0e-38 161.4 105 77.1
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 4.0e-38 161.4 103 75.7
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 5.2e-38 161.0 104 75.0
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 5.2e-38 161.0 104 75.0
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 2.0e-37 159.1 103 76.7
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 5.7e-37 157.5 106 75.5
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 2.2e-36 155.6 105 74.3
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 2.7e-31 138.7 103 66.0
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 2.7e-26 122.1 81 72.8
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 3.5e-26 121.7 104 56.7
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 5.0e-25 117.9 81 72.8
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 5.0e-25 117.9 81 70.4
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 5.0e-25 117.9 81 72.8
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 1.1e-24 116.7 81 71.6
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 1.9e-24 115.9 103 55.3
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 4.2e-24 114.8 103 53.4
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 9.5e-24 113.6 103 53.4
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 2.8e-23 112.1 103 49.5
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 4.7e-23 111.3 103 53.4
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 4.7e-23 111.3 103 49.5
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 4.7e-23 111.3 103 52.4
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 4.7e-23 111.3 103 53.4
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 6.1e-23 110.9 77 71.4
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 6.1e-23 110.9 77 71.4
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 6.1e-23 110.9 103 51.5
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 8.0e-23 110.5 103 52.4
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 1.4e-22 109.8 103 52.4
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 1.8e-22 109.4 103 51.5
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 2.3e-22 109.0 103 48.5
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 2.3e-22 109.0 103 48.5
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 3.0e-22 108.6 104 53.8
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 3.0e-22 108.6 103 51.5
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 4.0e-22 108.2 103 51.5
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 4.0e-22 108.2 103 51.5
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 4.0e-22 108.2 103 50.5
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 5.2e-22 107.8 102 51.0
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 5.2e-22 107.8 104 51.9
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 8.9e-22 107.1 103 47.6
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 8.9e-22 107.1 103 49.5
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 1.2e-21 106.7 103 53.4
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 1.2e-21 106.7 103 50.5
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 1.2e-21 106.7 103 50.5
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 1.2e-21 106.7 103 50.5
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 1.5e-21 106.3 106 46.2
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 1.5e-21 106.3 106 46.2
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.5e-21 106.3 104 52.9
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 2.0e-21 105.9 103 51.5
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 2.0e-21 105.9 103 51.5
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.0e-21 105.9 103 51.5
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 2.0e-21 105.9 106 47.2
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.6e-21 105.5 103 51.5
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 2.6e-21 105.5 104 51.9
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 2.6e-21 105.5 103 51.5
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 4.4e-21 104.8 112 47.3
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 4.4e-21 104.8 104 51.9
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 4.4e-21 104.8 103 48.5
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 5.7e-21 104.4 103 49.5
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 5.7e-21 104.4 103 50.5
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 9.8e-21 103.6 103 47.6
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 1.3e-20 103.2 108 49.1
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 1.3e-20 103.2 108 47.2
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 1.7e-20 102.8 108 48.1
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 1.7e-20 102.8 103 47.6
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 2.2e-20 102.4 103 50.5
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 2.2e-20 102.4 103 47.6
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 2.8e-20 102.1 103 47.6
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 2.8e-20 102.1 103 47.6
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 3.7e-20 101.7 103 47.6
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 3.7e-20 101.7 104 49.0
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 6.3e-20 100.9 103 47.6
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 6.3e-20 100.9 103 47.6
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 8.3e-20 100.5 102 46.1
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 1.1e-19 100.1 102 48.0
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 1.4e-19 99.8 103 48.5
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 1.4e-19 99.8 104 48.1
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 1.8e-19 99.4 106 50.9
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 1.8e-19 99.4 107 46.7
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 2.4e-19 99.0 103 49.5
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 3.1e-19 98.6 111 45.9
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 3.1e-19 98.6 103 47.6
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 3.1e-19 98.6 103 44.7
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 4.1e-19 98.2 103 46.6
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 4.1e-19 98.2 102 46.1
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 5.4e-19 97.8 102 47.1
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 7.0e-19 97.4 102 46.1
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 7.0e-19 97.4 102 46.1
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 9.2e-19 97.1 102 47.1
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 1.2e-18 96.7 102 47.1
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 1.2e-18 96.7 103 47.6
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 1.6e-18 96.3 115 46.1
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 1.6e-18 96.3 106 44.3
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 4.5e-18 94.7 106 43.4
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 4.5e-18 94.7 103 47.6
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 5.9e-18 94.4 105 46.7
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 1.3e-17 93.2 102 47.1
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 2.3e-17 92.4 103 43.7
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 3.8e-17 91.7 106 44.3
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 5.0e-17 91.3 103 44.7
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 8.6e-17 90.5 113 42.5
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 1.1e-16 90.1 103 42.7
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 1.5e-16 89.7 103 43.7
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 1.5e-16 89.7 103 44.7
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 1.9e-16 89.4 103 43.7
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 3.3e-16 88.6 110 41.8
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 3.3e-16 88.6 103 44.7
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 1.2e-15 86.7 103 43.7
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 3.6e-15 85.1 106 39.6
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 8.0e-15 84.0 110 42.7
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 3.0e-14 82.0 106 44.3
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 5.2e-14 81.3 113 40.7
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 5.2e-14 81.3 113 40.7
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 5.2e-14 81.3 113 40.7
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 6.8e-14 80.9 103 41.7
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 7.5e-13 77.4 103 39.8
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 1.7e-12 76.3 103 39.8
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 6.4e-12 74.3 106 38.7
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 1.1e-11 73.6 111 40.5
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 7.0e-11 70.9 83 41.0
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 9.2e-11 70.5 105 34.3
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 4.6e-10 68.2 114 32.5
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 4.6e-10 68.2 108 36.1
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 4.6e-10 68.2 108 36.1
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.3e-09 66.6 108 35.2
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 2.5e-08 62.4 92 39.1
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 7.3e-08 60.8 62 51.6
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 4.7e-07 58.2 61 45.9
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 6.8e-06 54.3 103 32.0
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 8.9e-06 53.9 32 71.9


User provided reference genes

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