Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00386 Brassica carinata HOM05D006123 ORTHO05D007578 3.5e-49 198.0 101 100.0
BcaB01g00394 Brassica carinata HOM05D006123 ORTHO05D007578 1.2e-41 172.9 94 92.6
C08p27270 Brassica napus HOM05D006123 ORTHO05D007578 1.9e-39 165.6 94 87.2
BolC8t50344H Brassica oleracea HOM05D006123 ORTHO05D007578 1.9e-39 165.6 94 87.2
BcaB01g00454 Brassica carinata HOM05D006123 ORTHO05D007578 2.5e-39 165.2 94 86.2
A09p45080 Brassica napus HOM05D006123 ORTHO05D007578 1.3e-38 162.9 94 85.1
BraA09t39969Z Brassica rapa HOM05D006123 ORTHO05D007578 2.4e-37 158.7 94 83.0
AL5G32490 Arabidopsis lyrata HOM05D006123 ORTHO05D007578 1.2e-36 156.4 91 85.7
Sp5g10290 Schrenkiella parvula HOM05D006123 ORTHO05D007578 7.6e-36 153.7 91 85.7
AT3G51980 Arabidopsis thaliana HOM05D006123 ORTHO05D007578 8.4e-35 150.2 91 83.5
Carub.0005s1833 Capsella rubella HOM05D006123 ORTHO05D007578 1.9e-34 149.1 94 76.6
CARHR161640 Cardamine hirsuta HOM05D006123 ORTHO05D007578 1.9e-34 149.1 94 78.7
Aa31LG10G7030 Aethionema arabicum HOM05D006123 ORTHO05D007578 4.1e-29 131.3 95 66.3
THA.LOC104823032 Tarenaya hassleriana HOM05D006123 ORTHO05D007578 3.4e-20 101.7 90 58.9
Sabra01G0050800 Salix brachista HOM05D006123 ORTHO05D007578 2.7e-17 92.0 96 42.7
Potri.001G072200 Populus trichocarpa HOM05D006123 ORTHO05D007578 3.6e-17 91.7 96 42.7
TWI36G1213 Tripterygium wilfordii HOM05D006123 ORTHO05D007578 3.6e-17 91.7 95 47.4
Manes.08G098100 Manihot esculenta HOM05D006123 ORTHO05D007578 7.9e-17 90.5 97 48.5
TAR374G1410 Trochodendron aralioides HOM05D006123 ORTHO05D007578 5.1e-16 87.8 92 46.7
PGR102G0396 Punica granatum HOM05D006123 ORTHO05D007578 2.0e-15 85.9 94 46.8
CSS0037190 Camellia sinensis var. sinensis HOM05D006123 ORTHO05D007578 7.4e-15 84.0 91 49.5
Gohir.A11G059600 Gossypium hirsutum HOM05D006123 ORTHO05D007578 7.4e-15 84.0 96 46.9
Gohir.D11G063700 Gossypium hirsutum HOM05D006123 ORTHO05D007578 7.4e-15 84.0 96 46.9
Actinidia13519 Actinidia chinensis HOM05D006123 ORTHO05D007578 9.7e-15 83.6 86 52.3
Dinv07617 Davidia involucrata HOM05D006123 ORTHO05D007578 1.3e-14 83.2 92 45.7
Cpa.g.sc252.15 Carica papaya HOM05D006123 ORTHO05D007578 1.7e-14 82.8 96 44.8
Sc07g0008580 Simmondsia chinensis HOM05D006123 ORTHO05D007578 1.7e-14 82.8 96 41.7
Sabra03G0115100 Salix brachista HOM05D006123 ORTHO05D007578 2.2e-14 82.4 94 44.7
EL10Ac5g12009 Beta vulgaris HOM05D006123 ORTHO05D007578 2.8e-14 82.0 97 41.2
Eucgr.B03575 Eucalyptus grandis HOM05D006123 ORTHO05D007578 3.7e-14 81.6 83 48.2
Oeu036874.2 Olea europaea HOM05D006123 ORTHO05D007578 4.8e-14 81.3 83 48.2
Gorai.007G068900 Gossypium raimondii HOM05D006123 ORTHO05D007578 8.2e-14 80.5 96 44.8
Hund14375 Selenicereus undatus HOM05D006123 ORTHO05D007578 1.1e-13 80.1 98 40.8
Ciclev10028563m.g Citrus clementina HOM05D006123 ORTHO05D007578 2.4e-13 79.0 96 42.7
Thecc.01G233200 Theobroma cacao HOM05D006123 ORTHO05D007578 3.1e-13 78.6 76 50.0
CDE07G0286 Ceratophyllum demersum HOM05D006123 ORTHO05D007578 4.1e-13 78.2 92 45.7
Atru.chr12.1487 Acer truncatum HOM05D006123 ORTHO05D007578 5.3e-13 77.8 96 44.8
Duzib264G0674 Durio zibethinus HOM05D006123 ORTHO05D007578 5.3e-13 77.8 94 47.9
COL.COLO4_15650 Corchorus olitorius HOM05D006123 ORTHO05D007578 1.2e-12 76.6 92 44.6
AUR62007355 Chenopodium quinoa HOM05D006123 ORTHO05D007578 1.6e-12 76.3 98 37.8
Lsat_1_v5_gn_4_1741 Lactuca sativa HOM05D006123 ORTHO05D007578 1.6e-12 76.3 83 49.4
HanXRQChr16g0516431 Helianthus annuus HOM05D006123 ORTHO05D007578 2.6e-12 75.5 94 46.8
Ah.07g200930 Amaranthus hybridus HOM05D006123 ORTHO05D007578 3.5e-12 75.1 97 38.1
CAN.G624.16 Capsicum annuum HOM05D006123 ORTHO05D007578 3.5e-12 75.1 89 48.3
MBI11_g33503_MAGBIO Magnolia biondii HOM05D006123 ORTHO05D007578 5.9e-12 74.3 96 42.7
Pp3c20_2600 Physcomitrium patens HOM05D006123 ORTHO05D007578 5.9e-12 74.3 94 45.7
CiPaw.05G096700 Carya illinoinensis HOM05D006123 ORTHO05D007578 7.7e-12 73.9 104 41.3
Cc11_g14840 Coffea canephora HOM05D006123 ORTHO05D007578 1.3e-11 73.2 108 40.7
Haze_12544 Corylus avellana HOM05D006123 ORTHO05D007578 1.7e-11 72.8 80 46.2
Hma1.2p1_0073F.1_g038620 Hydrangea macrophylla HOM05D006123 ORTHO05D007578 3.8e-11 71.6 86 45.3
ClCG06G001650 Citrullus lanatus HOM05D006123 ORTHO05D007578 6.5e-11 70.9 98 43.9
CsaV3_6G007640 Cucumis sativus L. HOM05D006123 ORTHO05D007578 8.5e-11 70.5 81 43.2
HPP92_007055 Vanilla planifolia HOM05D006123 ORTHO05D007578 1.1e-10 70.1 80 46.2
Os09g0512700 Oryza sativa ssp. japonica HOM05D006123 ORTHO05D007578 1.5e-10 69.7 72 52.8
FvH4_4g21990 Fragaria vesca HOM05D006123 ORTHO05D007578 1.9e-10 69.3 91 44.0
FAN07G1474 Fragaria x ananassa HOM05D006123 ORTHO05D007578 1.9e-10 69.3 91 44.0
FAN12G4288 Fragaria x ananassa HOM05D006123 ORTHO05D007578 1.9e-10 69.3 91 44.0
Phvul.006G013100 Phaseolus vulgaris HOM05D006123 ORTHO05D007578 1.9e-10 69.3 93 45.2
MELO3C022368.2 Cucumis melo HOM05D006123 ORTHO05D007578 3.2e-10 68.6 89 41.6
Glyma.20G054300 Glycine max HOM05D006123 ORTHO05D007578 3.2e-10 68.6 90 45.6
Psat5g111880 Pisum sativum HOM05D006123 ORTHO05D007578 3.2e-10 68.6 88 46.6
VMungo0540G0877 Vigna mungo HOM05D006123 ORTHO05D007578 3.2e-10 68.6 88 45.5
RcHm_v2.0_Chr4g0428181 Rosa chinensis HOM05D006123 ORTHO05D007578 4.2e-10 68.2 93 40.9
HPP92_025319 Vanilla planifolia HOM05D006123 ORTHO05D007578 4.2e-10 68.2 98 40.8
Lalb_Chr12g0202061 Lupinus albus HOM05D006123 ORTHO05D007578 5.5e-10 67.8 96 39.6
Sed0027865 Sechium edule HOM05D006123 ORTHO05D007578 7.2e-10 67.4 90 42.2
Medtr3g080080 Medicago truncatula HOM05D006123 ORTHO05D007578 9.4e-10 67.0 94 45.7
Nitab4.5_0002113g0090 Nicotiana tabacum HOM05D006123 ORTHO05D007578 1.2e-09 66.6 85 47.1
Potri.003G158701 Populus trichocarpa HOM05D006123 ORTHO05D007578 1.2e-09 66.6 88 38.6
TPR.G310 Trifolium pratense HOM05D006123 ORTHO05D007578 1.2e-09 66.6 88 43.2
Aqoxy6G00002 Aquilegia oxysepala HOM05D006123 ORTHO05D007578 1.6e-09 66.2 51 58.8
PGSC0003DMG400013211 Solanum tuberosum HOM05D006123 ORTHO05D007578 1.6e-09 66.2 50 60.0
QL03p046914 Quercus lobata HOM05D006123 ORTHO05D007578 2.1e-09 65.9 63 47.6
Solyc04g009320.3 Solanum lycopersicum HOM05D006123 ORTHO05D007578 2.1e-09 65.9 46 63.0
Migut.K01149 Erythranthe guttata HOM05D006123 ORTHO05D007578 2.7e-09 65.5 92 43.5
Prupe.1G210000 Prunus persica HOM05D006123 ORTHO05D007578 2.7e-09 65.5 94 39.4
PGSC0003DMG400032561 Solanum tuberosum HOM05D006123 ORTHO05D007578 3.6e-09 65.1 93 40.9
MD13G1135300 Malus domestica HOM05D006123 ORTHO05D007578 1.0e-08 63.5 100 39.0
Nn3g16171 Nelumbo nucifera HOM05D006123 ORTHO05D007578 1.0e-08 63.5 82 39.0
PSO478G0970 Papaver somniferum HOM05D006123 ORTHO05D007578 1.0e-08 63.5 38 73.7
Zm00001eb318160 Zea mays HOM05D006123 ORTHO05D007578 1.0e-08 63.5 99 43.4
ECA234G2504 Erigeron canadensis HOM05D006123 ORTHO05D007578 1.4e-08 63.2 41 65.9
Sopen04g004440 Solanum pennellii HOM05D006123 ORTHO05D007578 1.4e-08 63.2 42 66.7
Mapoly0124s0025 Marchantia polymorpha HOM05D006123 ORTHO05D007578 1.8e-08 62.8 84 40.5
MBI07_g11054_MAGBIO Magnolia biondii HOM05D006123 ORTHO05D007578 2.3e-08 62.4 87 42.5
ATR0582G035 Amborella trichopoda HOM05D006123 ORTHO05D007578 3.0e-08 62.0 65 44.6
SMO367G0194 Selaginella moellendorffii HOM05D006123 ORTHO05D007578 4.0e-08 61.6 86 37.2
SEGI_34276 Sequoiadendron giganteum HOM05D006123 ORTHO05D007578 4.0e-08 61.6 91 36.3
Lj6g0015569 Lotus japonicus HOM05D006123 ORTHO05D007578 5.2e-08 61.2 95 40.0
arahy.Tifrunner.gnm1.ann1.BTS312 Arachis hypogaea HOM05D006123 ORTHO05D007578 6.7e-08 60.8 89 42.7
arahy.Tifrunner.gnm1.ann1.XG2HYZ Arachis hypogaea HOM05D006123 ORTHO05D007578 6.7e-08 60.8 89 42.7
arahy.Tifrunner.gnm1.ann1.9L3MVK Arachis hypogaea HOM05D006123 ORTHO05D007578 3.3e-07 58.5 74 44.6
unitig_749.g13336 Utricularia gibba HOM05D006123 ORTHO05D007578 3.3e-07 58.5 91 41.8
SEGI_37385 Sequoiadendron giganteum HOM05D006123 ORTHO05D007578 5.7e-07 57.8 46 50.0
SalBow2G0521 Salvia bowleyana HOM05D006123 ORTHO05D007578 9.7e-07 57.0 39 59.0


User provided reference genes

Program Settings