Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00288 Brassica carinata HOM05D000666 ORTHO05D001727 1.3e-65 253.1 141 100.0
BcaB01g00285 Brassica carinata HOM05D000666 ORTHO05D001727 3.9e-46 188.3 132 83.3
A09p46360 Brassica napus HOM05D000666 ORTHO05D001727 1.4e-43 179.9 150 76.0
BraA09t40101Z Brassica rapa HOM05D000666 ORTHO05D001727 1.4e-43 179.9 150 76.0
C08p28680 Brassica napus HOM05D000666 ORTHO05D001727 1.0e-41 173.7 131 79.4
BolC8t50473H Brassica oleracea HOM05D000666 ORTHO05D001727 4.1e-35 151.8 131 71.8
BcaC07g39707 Brassica carinata HOM05D000666 ORTHO05D001727 7.2e-32 141.0 131 67.9
Thhalv10010619m.g Eutrema salsugineum HOM05D000666 ORTHO05D001727 7.2e-32 141.0 134 66.4
AT3G53350 Arabidopsis thaliana HOM05D000666 ORTHO05D001727 8.7e-30 134.0 162 59.3
Sp5g09000 Schrenkiella parvula HOM05D000297 ORTHO05D001727 9.7e-29 130.6 141 60.3
Carub.0005s1990 Capsella rubella HOM05D000666 ORTHO05D001727 9.1e-27 124.0 166 55.4
Sp1g13110 Schrenkiella parvula HOM05D000666 ORTHO05D001727 3.4e-26 122.1 153 57.5
AL5G34260 Arabidopsis lyrata HOM05D000666 ORTHO05D001727 4.5e-26 121.7 164 54.9
CARHR163220 Cardamine hirsuta HOM05D000666 ORTHO05D001727 5.9e-26 121.3 135 60.7
BcaB01g00286 Brassica carinata HOM05D000666 ORTHO05D001727 5.3e-19 98.2 73 76.7
CARHR131590 Cardamine hirsuta HOM05D000666 ORTHO05D001727 1.1e-16 90.5 208 39.9
A05p08760 Brassica napus HOM05D000666 ORTHO05D001727 7.2e-16 87.8 203 38.9
Aa31LG10G8530 Aethionema arabicum HOM05D000666 ORTHO05D001727 1.6e-15 86.7 114 52.6
Carub.0004s1896 Capsella rubella HOM05D000666 ORTHO05D001727 2.7e-15 85.9 215 35.8
BcaC02g11833 Brassica carinata HOM05D000666 ORTHO05D001727 3.6e-15 85.5 210 38.1
C04p10880 Brassica napus HOM05D000666 ORTHO05D001727 3.6e-15 85.5 210 38.1
BolC4t22680H Brassica oleracea HOM05D000666 ORTHO05D001727 4.7e-15 85.1 210 38.1
BraA05t19844Z Brassica rapa HOM05D000666 ORTHO05D001727 4.7e-15 85.1 199 39.2
Thhalv10016431m.g Eutrema salsugineum HOM05D000666 ORTHO05D001727 6.1e-15 84.7 212 35.8
BcaB02g09305 Brassica carinata HOM05D000666 ORTHO05D001727 3.0e-14 82.4 205 36.6
BcaB01g03791 Brassica carinata HOM05D000666 ORTHO05D001727 3.9e-14 82.0 207 36.2
Sp4g19400 Schrenkiella parvula HOM05D000666 ORTHO05D001727 3.9e-14 82.0 214 37.4
AT2G37080 Arabidopsis thaliana HOM05D000666 ORTHO05D001727 1.1e-13 80.5 215 35.8
AL4G33430 Arabidopsis lyrata HOM05D000666 ORTHO05D001727 2.0e-13 79.7 234 35.9
BraA03t11286Z Brassica rapa HOM05D000666 ORTHO05D001727 3.3e-13 79.0 192 38.5
GSVIVG01025630001 Vitis vinifera HOM05D000666 ORTHO05D001727 3.3e-13 79.0 146 43.2
Aa31LG5G22360 Aethionema arabicum HOM05D000666 ORTHO05D001727 4.4e-13 78.6 193 37.3
C03p24020 Brassica napus HOM05D000666 ORTHO05D001727 4.4e-13 78.6 198 37.4
COL.COLO4_27078 Corchorus olitorius HOM05D000666 ORTHO05D001727 7.4e-13 77.8 221 33.9
Duzib093G0204 Durio zibethinus HOM05D000666 ORTHO05D001727 3.7e-12 75.5 221 34.4
Potri.016G085900 Populus trichocarpa HOM05D000666 ORTHO05D001727 6.3e-12 74.7 221 35.3
Gohir.D09G147500 Gossypium hirsutum HOM05D000666 ORTHO05D001727 1.1e-11 73.9 104 45.2
A03p20430 Brassica napus HOM05D000666 ORTHO05D001727 1.4e-11 73.6 191 38.2
Duzib128G0466 Durio zibethinus HOM05D000666 ORTHO05D001727 1.4e-11 73.6 219 32.9
Gohir.A09G151900 Gossypium hirsutum HOM05D000666 ORTHO05D001727 1.4e-11 73.6 104 44.2
BcaC01g05630 Brassica carinata HOM05D000666 ORTHO05D001727 2.4e-11 72.8 198 36.9
BolC3t14793H Brassica oleracea HOM05D000666 ORTHO05D001727 2.4e-11 72.8 198 36.9
Psat6g070440 Pisum sativum HOM05D000666 ORTHO05D001727 2.4e-11 72.8 196 36.2
Thecc.05G054100 Theobroma cacao HOM05D000666 ORTHO05D001727 2.4e-11 72.8 106 45.3
Prupe.6G241200 Prunus persica HOM05D000666 ORTHO05D001727 3.1e-11 72.4 102 47.1
Gorai.006G168600 Gossypium raimondii HOM05D000666 ORTHO05D001727 4.1e-11 72.0 104 45.2
BcaB01g00287 Brassica carinata HOM05D000666 ORTHO05D001727 7.0e-11 71.2 42 88.1
CSS0033261 Camellia sinensis var. sinensis HOM05D000666 ORTHO05D001727 9.1e-11 70.9 182 38.5
Manes.08G003600 Manihot esculenta HOM05D000666 ORTHO05D001727 1.6e-10 70.1 127 40.9
Sabra06G0103100 Salix brachista HOM05D000666 ORTHO05D001727 1.6e-10 70.1 221 32.6
THA.LOC104823455 Tarenaya hassleriana HOM05D000666 ORTHO05D001727 1.6e-10 70.1 203 34.0
CiPaw.09G179900 Carya illinoinensis HOM05D000666 ORTHO05D001727 3.5e-10 68.9 220 31.8
RcHm_v2.0_Chr3g0468851 Rosa chinensis HOM05D000666 ORTHO05D001727 4.5e-10 68.6 102 43.1
FvH4_6g15372 Fragaria vesca HOM05D000666 ORTHO05D001727 5.9e-10 68.2 60 58.3
FAN05G1417 Fragaria x ananassa HOM05D000666 ORTHO05D001727 5.9e-10 68.2 60 58.3
FAN09G4646 Fragaria x ananassa HOM05D000666 ORTHO05D001727 5.9e-10 68.2 60 58.3
FAN14G2440 Fragaria x ananassa HOM05D000666 ORTHO05D001727 5.9e-10 68.2 60 58.3
Potri.006G131400 Populus trichocarpa HOM05D000666 ORTHO05D001727 5.9e-10 68.2 221 33.0
Lj5g0006568 Lotus japonicus HOM05D000666 ORTHO05D001727 7.7e-10 67.8 111 45.9
Actinidia11224 Actinidia chinensis HOM05D000666 ORTHO05D001727 1.0e-09 67.4 221 31.2
QL07p045248 Quercus lobata HOM05D000666 ORTHO05D001727 1.0e-09 67.4 106 45.3
arahy.Tifrunner.gnm1.ann1.G3522P Arachis hypogaea HOM05D000666 ORTHO05D001727 1.3e-09 67.0 107 45.8
Cpa.g.sc45.32 Carica papaya HOM05D000666 ORTHO05D001727 1.3e-09 67.0 221 31.2
DCAR_020874 Daucus carota HOM05D000666 ORTHO05D001727 1.7e-09 66.6 221 31.2
Sabra16G0092300 Salix brachista HOM05D000666 ORTHO05D001727 1.7e-09 66.6 109 43.1
arahy.Tifrunner.gnm1.ann1.VB4B3G Arachis hypogaea HOM05D000666 ORTHO05D001727 2.9e-09 65.9 107 44.9
Psat3g044520 Pisum sativum HOM05D000666 ORTHO05D001727 2.9e-09 65.9 84 52.4
Manes.09G080900 Manihot esculenta HOM05D000666 ORTHO05D001727 3.8e-09 65.5 95 47.4
TPR.G30249 Trifolium pratense HOM05D000666 ORTHO05D001727 3.8e-09 65.5 191 34.6
VMungo0720G2549 Vigna mungo HOM05D000666 ORTHO05D001727 3.8e-09 65.5 68 55.9
Ciclev10011300m.g Citrus clementina HOM05D000666 ORTHO05D001727 5.0e-09 65.1 112 38.4
Haze_20647 Corylus avellana HOM05D000666 ORTHO05D001727 6.5e-09 64.7 112 42.0
Gorai.002G250100 Gossypium raimondii HOM05D000666 ORTHO05D001727 6.5e-09 64.7 192 32.8
PGR142G3858 Punica granatum HOM05D000666 ORTHO05D001727 6.5e-09 64.7 210 34.8
arahy.Tifrunner.gnm1.ann1.C2L54K Arachis hypogaea HOM05D000666 ORTHO05D001727 8.5e-09 64.3 119 39.5
arahy.Tifrunner.gnm1.ann1.HJ42P8 Arachis hypogaea HOM05D000666 ORTHO05D001727 8.5e-09 64.3 119 39.5
CAN.G933.6 Capsicum annuum HOM05D000666 ORTHO05D001727 8.5e-09 64.3 95 47.4
Medtr7g061150 Medicago truncatula HOM05D000666 ORTHO05D001727 1.1e-08 63.9 137 38.0
Medtr7g100730 Medicago truncatula HOM05D000666 ORTHO05D001727 1.1e-08 63.9 137 38.0
TWI77G0173 Tripterygium wilfordii HOM05D000666 ORTHO05D001727 1.1e-08 63.9 111 41.4
Gohir.A01G217000 Gossypium hirsutum HOM05D000666 ORTHO05D001727 1.5e-08 63.5 192 35.9
Gohir.A04G076700 Gossypium hirsutum HOM05D000666 ORTHO05D001727 1.5e-08 63.5 100 44.0
EL10Ac7g17354 Beta vulgaris HOM05D000666 ORTHO05D001727 1.9e-08 63.2 218 30.7
Gohir.D04G115700 Gossypium hirsutum HOM05D000666 ORTHO05D001727 1.9e-08 63.2 100 44.0
Gorai.009G420300 Gossypium raimondii HOM05D000666 ORTHO05D001727 1.9e-08 63.2 100 44.0
Medtr1g066850 Medicago truncatula HOM05D000666 ORTHO05D001727 1.9e-08 63.2 194 34.0
Glyma.03G178100 Glycine max HOM05D000666 ORTHO05D001727 2.5e-08 62.8 119 38.7
Oeu026066.1 Olea europaea HOM05D000666 ORTHO05D001727 2.5e-08 62.8 214 34.1
Phvul.007G163800 Phaseolus vulgaris HOM05D000666 ORTHO05D001727 2.5e-08 62.8 160 33.1
Hma1.2p1_0350F.1_g132750 Hydrangea macrophylla HOM05D000666 ORTHO05D001727 3.2e-08 62.4 98 45.9
SalBow3G4214 Salvia bowleyana HOM05D000666 ORTHO05D001727 3.2e-08 62.4 190 32.1
Glyma.10G049600 Glycine max HOM05D000666 ORTHO05D001727 4.2e-08 62.0 119 38.7
Ca_08827_v3 Cicer arietinum L. HOM05D000666 ORTHO05D001727 5.5e-08 61.6 52 67.3
Dinv37254 Davidia involucrata HOM05D000666 ORTHO05D001727 5.5e-08 61.6 86 47.7
Duzib106G0137 Durio zibethinus HOM05D000666 ORTHO05D001727 5.5e-08 61.6 116 37.9
TPR.G36910 Trifolium pratense HOM05D000666 ORTHO05D001727 5.5e-08 61.6 56 60.7
Atru.chr8.2558 Acer truncatum HOM05D000666 ORTHO05D001727 7.2e-08 61.2 220 30.5
CANSAT80G0496 Cannabis sativa HOM05D000666 ORTHO05D001727 7.2e-08 61.2 111 40.5
AUR62040022 Chenopodium quinoa HOM05D000666 ORTHO05D001727 7.2e-08 61.2 129 35.7
DCAR_002495 Daucus carota HOM05D000666 ORTHO05D001727 7.2e-08 61.2 237 30.8
AUR62043154 Chenopodium quinoa HOM05D000666 ORTHO05D001727 9.4e-08 60.8 216 31.0
Nitab4.5_0001142g0100 Nicotiana tabacum HOM05D000666 ORTHO05D001727 9.4e-08 60.8 217 30.0
Cfa017510 Carpinus fangiana HOM05D000666 ORTHO05D001727 1.6e-07 60.1 100 44.0
Lalb_Chr06g0171431 Lupinus albus HOM05D000666 ORTHO05D001727 1.6e-07 60.1 166 35.5
Peaxi162Scf00005g00455 Petunia axillaris HOM05D000666 ORTHO05D001727 1.6e-07 60.1 220 31.4
Sed0007815 Sechium edule HOM05D000666 ORTHO05D001727 1.6e-07 60.1 197 31.0
Glyma.19G178900 Glycine max HOM05D000666 ORTHO05D001727 2.1e-07 59.7 75 49.3
Hund20172 Selenicereus undatus HOM05D000666 ORTHO05D001727 2.1e-07 59.7 104 38.5
Sopen10g035400 Solanum pennellii HOM05D000666 ORTHO05D001727 2.1e-07 59.7 214 32.7
Ca_11453_v3 Cicer arietinum L. HOM05D000666 ORTHO05D001727 2.7e-07 59.3 190 31.6
Cc11_g02980 Coffea canephora HOM05D000666 ORTHO05D001727 2.7e-07 59.3 60 55.0
MELO3C014260.2 Cucumis melo HOM05D000666 ORTHO05D001727 2.7e-07 59.3 197 27.9
Dinv01987 Davidia involucrata HOM05D000666 ORTHO05D001727 2.7e-07 59.3 60 56.7
Eucgr.K03212 Eucalyptus grandis HOM05D000666 ORTHO05D001727 3.6e-07 58.9 109 43.1
Lalb_Chr21g0314691 Lupinus albus HOM05D000666 ORTHO05D001727 3.6e-07 58.9 67 53.7
Nitab4.5_0003973g0030 Nicotiana tabacum HOM05D000666 ORTHO05D001727 3.6e-07 58.9 107 43.0
SalBow4G1161 Salvia bowleyana HOM05D000666 ORTHO05D001727 3.6e-07 58.9 230 30.0
TWI74G0368 Tripterygium wilfordii HOM05D000666 ORTHO05D001727 4.7e-07 58.5 108 39.8
vmacro20057 Vaccinium macrocarpon HOM05D000666 ORTHO05D001727 4.7e-07 58.5 107 39.3
Nitab4.5_0003895g0040 Nicotiana tabacum HOM05D000666 ORTHO05D001727 6.1e-07 58.2 218 29.4
Migut.L01661 Erythranthe guttata HOM05D000666 ORTHO05D001727 8.0e-07 57.8 77 51.9
Oeu029543.1 Olea europaea HOM05D000666 ORTHO05D001727 1.0e-06 57.4 104 42.3
PGSC0003DMG400017592 Solanum tuberosum HOM05D000666 ORTHO05D001727 1.0e-06 57.4 220 32.7
DCAR_006038 Daucus carota HOM05D000666 ORTHO05D001727 1.4e-06 57.0 116 37.9
Solyc10g086030.2 Solanum lycopersicum HOM05D000666 ORTHO05D001727 1.4e-06 57.0 214 31.8
VMungo1127G0512 Vigna mungo HOM05D000666 ORTHO05D001727 1.4e-06 57.0 128 39.8
Lalb_Chr01g0019011 Lupinus albus HOM05D000666 ORTHO05D001727 1.8e-06 56.6 98 42.9
Peaxi162Scf00472g00413 Petunia axillaris HOM05D000666 ORTHO05D001727 1.8e-06 56.6 102 40.2
Aqoxy4G03196 Aquilegia oxysepala HOM05D000666 ORTHO05D001727 2.3e-06 56.2 107 39.3
Glyma.13G137200 Glycine max HOM05D000666 ORTHO05D001727 2.3e-06 56.2 110 40.0
HanXRQChr14g0454681 Helianthus annuus HOM05D000666 ORTHO05D001727 2.3e-06 56.2 218 28.4
SalBow3G1008 Salvia bowleyana HOM05D000666 ORTHO05D001727 2.3e-06 56.2 218 28.9
Solyc09g007360.3 Solanum lycopersicum HOM05D000666 ORTHO05D001727 2.3e-06 56.2 60 51.7
Solyc10g019030.1 Solanum lycopersicum HOM05D000666 ORTHO05D001727 3.0e-06 55.8 122 41.0
PGSC0003DMG400001760 Solanum tuberosum HOM05D000666 ORTHO05D001727 3.0e-06 55.8 220 29.5
CsaV3_1G013090 Cucumis sativus L. HOM05D000666 ORTHO05D001727 5.2e-06 55.1 114 35.1
Migut.J00417 Erythranthe guttata HOM05D000666 ORTHO05D001727 5.2e-06 55.1 217 29.5
Nitab4.5_0000754g0110 Nicotiana tabacum HOM05D000666 ORTHO05D001727 6.7e-06 54.7 105 41.9
Ah.04g151640 Amaranthus hybridus HOM05D000527 ORTHO05D000559 8.8e-06 54.3 99 39.4
ClCG04G008820 Citrullus lanatus HOM05D000666 ORTHO05D001727 8.8e-06 54.3 199 29.1
FAN21G0691 Fragaria x ananassa HOM05D000666 ORTHO05D001727 8.8e-06 54.3 104 37.5
MD04G1104300 Malus domestica HOM05D000666 ORTHO05D001727 8.8e-06 54.3 45 60.0
TPR.G2981 Trifolium pratense HOM05D000666 ORTHO05D001727 8.8e-06 54.3 132 32.6


User provided reference genes

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