Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00261 Brassica carinata HOM05D004804 ORTHO05D005882 4.8e-213 744.2 365 100.0
A09p46600 Brassica napus HOM05D004804 ORTHO05D005882 4.5e-195 684.5 365 93.2
BraA09t40124Z Brassica rapa HOM05D004804 ORTHO05D005882 1.0e-194 683.3 367 92.6
Sp5g08760 Schrenkiella parvula HOM05D004804 ORTHO05D005882 2.7e-192 675.2 365 91.8
C08p28920 Brassica napus HOM05D004804 ORTHO05D005882 1.3e-189 666.4 365 91.5
BcaNung07017 Brassica carinata HOM05D004804 ORTHO05D005882 8.2e-189 663.7 336 98.2
AT3G53580 Arabidopsis thaliana HOM05D004804 ORTHO05D005882 4.5e-187 657.9 365 89.0
A07p21740 Brassica napus HOM05D004804 ORTHO05D005882 2.2e-186 655.6 368 88.9
BolC6t37342H Brassica oleracea HOM05D004804 ORTHO05D005882 1.1e-185 653.3 367 88.8
BcaB02g07773 Brassica carinata HOM05D004804 ORTHO05D005882 1.5e-185 652.9 369 88.3
CARHR163490 Cardamine hirsuta HOM05D004804 ORTHO05D005882 2.5e-185 652.1 367 89.6
AL5G34510 Arabidopsis lyrata HOM05D004804 ORTHO05D005882 3.2e-185 651.7 365 88.2
Carub.0005s2015 Capsella rubella HOM05D004804 ORTHO05D005882 3.2e-185 651.7 367 88.8
BraA07t29856Z Brassica rapa HOM05D004804 ORTHO05D005882 5.5e-185 651.0 369 88.6
BcaC08g44637 Brassica carinata HOM05D004804 ORTHO05D005882 9.4e-185 650.2 367 88.3
C06p21540 Brassica napus HOM05D004804 ORTHO05D005882 9.4e-185 650.2 367 88.3
Thhalv10010477m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 1.8e-180 636.0 368 87.5
Thhalv10016845m.g Eutrema salsugineum HOM05D004804 ORTHO05D005882 2.4e-172 609.0 364 82.1
Aa31LG5G22830 Aethionema arabicum HOM05D004804 ORTHO05D005882 2.7e-171 605.5 365 81.4
Sp4g19750 Schrenkiella parvula HOM05D004804 ORTHO05D005882 6.1e-168 594.3 365 80.3
BolC4t22652H Brassica oleracea HOM05D004804 ORTHO05D005882 2.8e-165 585.5 367 79.0
A05p08530 Brassica napus HOM05D004804 ORTHO05D005882 4.8e-165 584.7 366 79.8
BraA05t19821Z Brassica rapa HOM05D004804 ORTHO05D005882 6.3e-165 584.3 366 79.8
C04p10610 Brassica napus HOM05D004804 ORTHO05D005882 1.1e-164 583.6 367 78.7
THA.LOC104806587 Tarenaya hassleriana HOM05D004804 ORTHO05D005882 8.9e-159 563.9 365 75.9
COL.COLO4_14869 Corchorus olitorius HOM05D004804 ORTHO05D005882 7.5e-158 560.8 365 76.4
Gohir.D04G118600 Gossypium hirsutum HOM05D004804 ORTHO05D005882 1.3e-154 550.1 366 74.3
CiPaw.09G187800 Carya illinoinensis HOM05D004804 ORTHO05D005882 3.9e-154 548.5 370 74.1
BcaNung07160 Brassica carinata HOM05D004804 ORTHO05D005882 1.1e-153 547.0 365 79.2
Gohir.A04G079400 Gossypium hirsutum HOM05D004804 ORTHO05D005882 2.5e-153 545.8 366 74.3
Gorai.009G423800 Gossypium raimondii HOM05D004804 ORTHO05D005882 2.5e-153 545.8 367 74.1
Duzib093G1125 Durio zibethinus HOM05D004804 ORTHO05D005882 5.6e-153 544.7 365 74.5
GSVIVG01025612001 Vitis vinifera HOM05D004804 ORTHO05D005882 1.2e-152 543.5 308 82.5
BcaC07g39720 Brassica carinata HOM05D004804 ORTHO05D005882 3.6e-152 542.0 337 84.0
RcHm_v2.0_Chr3g0467571 Rosa chinensis HOM05D004804 ORTHO05D005882 3.1e-151 538.9 365 73.2
CANSAT80G2153 Cannabis sativa HOM05D004804 ORTHO05D005882 5.2e-151 538.1 322 77.6
Thecc.05G045900 Theobroma cacao HOM05D004804 ORTHO05D005882 6.8e-151 537.7 365 73.7
TWI53G1005 Tripterygium wilfordii HOM05D004804 ORTHO05D005882 2.6e-150 535.8 374 71.4
FvH4_6g14490 Fragaria vesca HOM05D004804 ORTHO05D005882 5.8e-150 534.6 366 72.4
Potri.006G102700 Populus trichocarpa HOM05D004804 ORTHO05D005882 5.8e-150 534.6 365 73.4
Hma1.2p1_1481F.1_g286070 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 9.8e-150 533.9 313 79.9
Potri.016G120900 Populus trichocarpa HOM05D004804 ORTHO05D005882 9.8e-150 533.9 363 72.5
Cc06_g03070 Coffea canephora HOM05D004804 ORTHO05D005882 1.3e-149 533.5 330 77.9
Manes.08G076545 Manihot esculenta HOM05D004804 ORTHO05D005882 2.2e-149 532.7 380 71.1
Ciclev10012025m.g Citrus clementina HOM05D004804 ORTHO05D005882 3.7e-149 531.9 369 72.1
MD04G1119400 Malus domestica HOM05D004804 ORTHO05D005882 4.9e-149 531.6 366 72.1
Aqoxy4G03017 Aquilegia oxysepala HOM05D004804 ORTHO05D005882 6.4e-149 531.2 320 80.0
MD12G1136700 Malus domestica HOM05D004804 ORTHO05D005882 8.3e-149 530.8 366 72.1
Haze_20724 Corylus avellana HOM05D004804 ORTHO05D005882 1.1e-148 530.4 358 73.2
PGR004G0439 Punica granatum HOM05D004804 ORTHO05D005882 1.1e-148 530.4 373 71.3
Ah.10g030750 Amaranthus hybridus HOM05D004804 ORTHO05D005882 1.4e-148 530.0 326 78.5
Sed0001519 Sechium edule HOM05D004804 ORTHO05D005882 1.9e-148 529.6 369 71.5
Eucgr.K03171 Eucalyptus grandis HOM05D004804 ORTHO05D005882 2.4e-148 529.3 359 73.8
Sc01g0003910 Simmondsia chinensis HOM05D004804 ORTHO05D005882 2.4e-148 529.3 365 71.8
Cfa017439 Carpinus fangiana HOM05D004804 ORTHO05D005882 4.1e-148 528.5 373 71.6
EL10Ac2g02842 Beta vulgaris HOM05D004804 ORTHO05D005882 5.4e-148 528.1 365 71.2
PSO339G6548 Papaver somniferum HOM05D004804 ORTHO05D005882 7.0e-148 527.7 321 78.5
PSO384G4865 Papaver somniferum HOM05D004804 ORTHO05D005882 9.2e-148 527.3 352 73.6
Hund13338 Selenicereus undatus HOM05D004804 ORTHO05D005882 9.2e-148 527.3 369 70.7
TAR623G1260 Trochodendron aralioides HOM05D004804 ORTHO05D005882 1.6e-147 526.6 315 79.4
CsaV3_4G024670 Cucumis sativus L. HOM05D004804 ORTHO05D005882 2.0e-147 526.2 365 71.2
Nn2g12889 Nelumbo nucifera HOM05D004804 ORTHO05D005882 2.0e-147 526.2 366 70.2
QL07p046693 Quercus lobata HOM05D004804 ORTHO05D005882 3.5e-147 525.4 369 70.5
Atru.chr8.1921 Acer truncatum HOM05D004804 ORTHO05D005882 6.0e-147 524.6 369 71.0
FAN02G1589 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.3e-146 523.5 366 70.8
FAN09G0808 Fragaria x ananassa HOM05D004804 ORTHO05D005882 3.9e-146 521.9 365 71.2
Dinv37213 Davidia involucrata HOM05D004804 ORTHO05D005882 1.5e-145 520.0 365 69.3
Lj2A100T74 Lonicera japonica HOM05D004804 ORTHO05D005882 1.9e-145 519.6 314 77.4
Actinidia05292 Actinidia chinensis HOM05D004804 ORTHO05D005882 4.3e-145 518.5 356 70.5
ClCG04G008480 Citrullus lanatus HOM05D004804 ORTHO05D005882 9.5e-145 517.3 382 67.5
Peaxi162Scf00039g00093 Petunia axillaris HOM05D004804 ORTHO05D005882 9.5e-145 517.3 356 70.5
AUR62026834 Chenopodium quinoa HOM05D004804 ORTHO05D005882 2.1e-144 516.2 371 69.5
SalBow1G1981 Salvia bowleyana HOM05D004804 ORTHO05D005882 2.1e-144 516.2 367 71.7
Zm00001eb136710 Zea mays HOM05D004804 ORTHO05D005882 2.1e-144 516.2 306 78.8
MSTRG.5692 Avicennia marina HOM05D004804 ORTHO05D005882 3.6e-144 515.4 371 69.8
SalBow4G1685 Salvia bowleyana HOM05D004804 ORTHO05D005882 3.6e-144 515.4 320 77.5
SGA_v2.0_scaffold126G33837 Striga asiatica HOM05D004804 ORTHO05D005882 3.6e-144 515.4 368 70.4
ECA238G1409 Erigeron canadensis HOM05D004804 ORTHO05D005882 4.7e-144 515.0 363 68.6
Oeu029811.2 Olea europaea HOM05D004804 ORTHO05D005882 6.2e-144 514.6 294 81.3
Lsat_1_v5_gn_2_111181 Lactuca sativa HOM05D004804 ORTHO05D005882 1.1e-143 513.8 369 67.8
DCAR_009258 Daucus carota HOM05D004804 ORTHO05D005882 1.8e-143 513.1 321 75.7
Migut.J00372 Erythranthe guttata HOM05D004804 ORTHO05D005882 1.2e-142 510.4 303 78.9
Nitab4.5_0002995g0070 Nicotiana tabacum HOM05D004804 ORTHO05D005882 5.8e-142 508.1 361 70.4
Rhsim05G0187300 Rhododendron simsii HOM05D004804 ORTHO05D005882 9.8e-142 507.3 388 66.0
HanXRQChr14g0453791 Helianthus annuus HOM05D004804 ORTHO05D005882 1.3e-141 506.9 329 72.0
CAN.G125.11 Capsicum annuum HOM05D004804 ORTHO05D005882 2.2e-141 506.1 297 78.1
VMungo1383G1812 Vigna mungo HOM05D004804 ORTHO05D005882 2.2e-141 506.1 369 67.2
Lalb_Chr25g0289471 Lupinus albus HOM05D004804 ORTHO05D005882 2.9e-141 505.8 363 69.1
Solyc09g005700.3 Solanum lycopersicum HOM05D004804 ORTHO05D005882 2.9e-141 505.8 378 67.7
arahy.Tifrunner.gnm1.ann1.EYL599 Arachis hypogaea HOM05D004804 ORTHO05D005882 3.7e-141 505.4 365 69.0
Glyma.03G173400 Glycine max HOM05D004804 ORTHO05D005882 4.9e-141 505.0 369 67.8
Glyma.19G174300 Glycine max HOM05D004804 ORTHO05D005882 6.4e-141 504.6 374 66.8
Phvul.001G170900 Phaseolus vulgaris HOM05D004804 ORTHO05D005882 1.4e-140 503.4 369 67.2
CDE08G0350 Ceratophyllum demersum HOM05D004804 ORTHO05D005882 4.1e-140 501.9 317 74.8
Migut.L01624 Erythranthe guttata HOM05D004804 ORTHO05D005882 4.1e-140 501.9 374 67.9
FAN14G5408 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.2e-139 500.4 365 69.3
TPR.G21455 Trifolium pratense HOM05D004804 ORTHO05D005882 3.5e-139 498.8 338 70.7
Lj1g0023900 Lotus japonicus HOM05D004804 ORTHO05D005882 1.0e-138 497.3 363 67.5
Medtr7g100345 Medicago truncatula HOM05D004804 ORTHO05D005882 1.3e-138 496.9 369 66.4
ATR0033G037 Amborella trichopoda HOM05D004804 ORTHO05D005882 1.7e-138 496.5 318 74.2
Ca_07739_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 1.9e-137 493.0 366 66.9
Lalb_Chr20g0113121 Lupinus albus HOM05D004804 ORTHO05D005882 4.3e-137 491.9 365 67.9
Actinidia19758 Actinidia chinensis HOM05D004804 ORTHO05D001149 2.1e-136 489.6 299 77.9
unitig_27.g24899 Utricularia gibba HOM05D002116 ORTHO05D005882 8.1e-136 487.6 361 67.6
vmacro20115 Vaccinium macrocarpon HOM05D004804 ORTHO05D005882 1.2e-134 483.8 306 74.8
Ca_08795_v3 Cicer arietinum L. HOM05D004804 ORTHO05D005882 5.8e-134 481.5 365 65.2
HPP92_019459 Vanilla planifolia HOM05D004804 ORTHO05D005882 1.3e-133 480.3 358 67.3
Nitab4.5_0004851g0050 Nicotiana tabacum HOM05D004804 ORTHO05D005882 9.2e-132 474.2 482 53.5
Nitab4.5_0005039g0030 Nicotiana tabacum HOM05D004804 ORTHO05D005882 5.1e-130 468.4 386 63.2
CSS0039312 Camellia sinensis var. sinensis HOM05D004804 ORTHO05D001149 1.1e-129 467.2 329 70.8
Sabra06G0079000 Salix brachista HOM05D004804 ORTHO05D005882 6.2e-128 461.5 288 77.1
MELO3C003100.2 Cucumis melo HOM05D004804 ORTHO05D005882 8.9e-127 457.6 388 61.9
BolC8t50494H Brassica oleracea HOM05D004804 ORTHO05D005882 1.7e-125 453.4 337 74.5
AUR62037218 Chenopodium quinoa HOM05D004804 ORTHO05D005882 4.9e-125 451.8 335 68.4
AagrBONN_evm.TU.Sc2ySwM_228.1472 Anthoceros agrestis HOM05D004804 ORTHO05D005882 1.4e-124 450.3 286 72.7
SMO118G0282 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 6.9e-119 431.4 286 71.0
Psat3g121680 Pisum sativum HOM05D004804 ORTHO05D005882 9.9e-118 427.6 274 73.7
Mapoly0001s0200 Marchantia polymorpha HOM05D004804 ORTHO05D005882 7.3e-113 411.4 368 59.2
Pp3c10_3520 Physcomitrium patens HOM05D004804 ORTHO05D005882 2.6e-110 402.9 291 65.6
AUR62038459 Chenopodium quinoa HOM05D004804 ORTHO05D005882 9.3e-108 394.4 242 75.2
Cre05.g237400 Chlamydomonas reinhardtii HOM05D004804 ORTHO05D005882 1.2e-107 394.0 285 66.3
Sopen09g001590 Solanum pennellii HOM05D004804 ORTHO05D005882 3.2e-100 369.4 294 63.6
MCO16G320 Micromonas commoda HOM05D004804 ORTHO05D005882 4.2e-100 369.0 285 61.8
Zm00001eb028810 Zea mays HOM05D004804 ORTHO05D005882 6.0e-99 365.2 240 72.1
SMO116G0240 Selaginella moellendorffii HOM05D004804 ORTHO05D005882 1.3e-96 357.5 294 59.5
Prupe.6G249100 Prunus persica HOM05D004804 ORTHO05D005882 8.2e-96 354.8 255 70.2
Cpa.g.c31068.3 Carica papaya HOM05D004804 ORTHO05D005882 1.4e-92 344.0 258 66.3
PRCOL_00004448 Prasinoderma coloniale HOM05D004804 ORTHO05D005882 2.6e-86 323.2 290 56.6
Cpa.g.c30481.1 Carica papaya HOM05D004804 ORTHO05D005882 2.4e-79 300.1 168 82.1
MD07G1084600 Malus domestica HOM05D004804 ORTHO05D005882 1.1e-73 281.2 159 82.4
Medtr7g072350 Medicago truncatula HOM05D004804 ORTHO05D005882 1.4e-63 247.7 230 56.1
MD07G1085800 Malus domestica HOM05D004804 ORTHO05D005882 6.8e-58 228.8 127 81.1
BcaC05g25676 Brassica carinata HOM05D004804 ORTHO05D005882 1.1e-55 221.5 147 74.8
FvH4_5g27660 Fragaria vesca HOM05D004804 ORTHO05D005882 1.4e-55 221.1 149 69.8
AUR62014235 Chenopodium quinoa HOM05D004804 ORTHO05D005882 8.0e-51 205.3 339 41.3
BcaC03g18267 Brassica carinata HOM05D004804 ORTHO05D005882 3.4e-49 199.9 147 69.4
BcaC03g18268 Brassica carinata HOM05D004804 ORTHO05D005882 1.6e-46 191.0 147 68.0
FAN18G1921 Fragaria x ananassa HOM05D004804 ORTHO05D005882 1.6e-43 181.0 100 79.0
BcaC01g02299 Brassica carinata HOM05D004804 ORTHO05D005882 2.0e-41 174.1 147 61.9
SEGI_18757 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 6.4e-40 169.1 125 63.2
SEGI_29945 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 4.3e-36 156.4 108 66.7
Hma1.2p1_0683F.1_g202920 Hydrangea macrophylla HOM05D004804 ORTHO05D005882 7.3e-28 129.0 72 81.9
SEGI_13543 Sequoiadendron giganteum HOM05D004804 ORTHO05D005882 4.6e-22 109.8 64 79.7
C03p66890 Brassica napus HOM05D004804 ORTHO05D005882 1.7e-21 107.8 67 74.6
BolC3t18959H Brassica oleracea HOM05D004804 ORTHO05D005882 1.7e-21 107.8 67 74.6
Atru.chr5.1411 Acer truncatum HOM05D004804 ORTHO05D005882 2.5e-20 104.0 75 66.7
MSTRG.19109 Avicennia marina HOM05D004804 ORTHO05D005882 8.1e-19 99.0 72 65.3
BolC5t30247H Brassica oleracea HOM05D003490 ORTHO05D039708 1.1e-15 88.6 45 88.9
C03p66880 Brassica napus HOM05D004804 ORTHO05D005882 2.4e-15 87.4 45 88.9
BolC3t18958H Brassica oleracea HOM05D004804 ORTHO05D005882 4.1e-15 86.7 44 90.9
FAN13G1509 Fragaria x ananassa HOM05D004804 ORTHO05D022561 3.3e-12 77.0 41 78.0
Rhsim01G0214400 Rhododendron simsii HOM05D004804 ORTHO05D000007 3.3e-12 77.0 35 91.4
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 2.6e-09 67.4 37 86.5
BcaB03g16084 Brassica carinata HOM05D004804 ORTHO05D001170 5.4e-07 59.7 51 60.8
SGA_v2.0_scaffold594G53100 Striga asiatica HOM05D004804 ORTHO05D005882 2.1e-06 57.8 58 53.4


User provided reference genes

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