Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 3.2e-170 601.7 305 100.0
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 3.7e-94 349.0 232 79.3
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 2.6e-87 326.2 220 78.2
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 1.7e-86 323.6 250 69.2
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 1.1e-85 320.9 250 68.8
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 3.5e-84 315.8 250 68.0
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 6.0e-84 315.1 255 67.1
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 1.3e-83 313.9 250 67.6
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 1.3e-83 313.9 250 67.6
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 1.1e-82 310.8 252 67.5
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 1.9e-82 310.1 220 75.5
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 2.5e-82 309.7 220 75.5
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 7.3e-82 308.1 220 75.0
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 1.1e-64 251.1 256 59.0
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 8.4e-62 241.5 256 57.4
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 1.4e-61 240.7 257 57.6
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 6.0e-60 235.3 251 58.6
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 3.0e-59 233.0 261 53.6
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 1.9e-58 230.3 258 56.2
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 1.8e-51 207.2 249 53.8
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 1.1e-50 204.5 253 51.8
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 7.6e-47 191.8 253 47.8
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.3e-46 191.0 243 50.2
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 2.2e-46 190.3 247 50.2
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 3.8e-46 189.5 258 48.4
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 5.0e-46 189.1 243 49.8
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 1.9e-45 187.2 179 62.0
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 3.2e-45 186.4 180 62.2
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 7.2e-45 185.3 243 49.4
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 1.2e-44 184.5 255 49.0
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 1.6e-44 184.1 248 50.0
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 2.7e-44 183.3 169 60.4
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 3.6e-44 183.0 180 61.1
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 1.8e-43 180.6 252 47.2
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 1.1e-42 177.9 253 46.2
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 1.9e-42 177.2 254 47.6
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 4.3e-42 176.0 253 45.1
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 4.3e-42 176.0 254 45.7
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 4.3e-42 176.0 254 45.7
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 9.7e-42 174.9 253 47.8
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.3e-41 174.5 251 44.2
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 1.3e-41 174.5 251 46.6
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 2.2e-41 173.7 251 43.8
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 2.8e-41 173.3 250 47.2
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 2.8e-41 173.3 253 46.2
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 6.3e-41 172.2 256 46.9
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 8.2e-41 171.8 265 44.9
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 1.8e-40 170.6 254 45.7
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 4.1e-40 169.5 254 46.1
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 4.1e-40 169.5 250 46.0
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 9.1e-40 168.3 248 45.6
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 9.1e-40 168.3 250 46.0
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 1.2e-39 167.9 253 47.4
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 2.0e-39 167.2 244 46.7
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 2.0e-39 167.2 264 45.1
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 2.6e-39 166.8 249 45.8
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 4.5e-39 166.0 259 45.2
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 7.7e-39 165.2 282 42.9
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 1.0e-38 164.9 247 43.7
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 1.0e-38 164.9 282 42.9
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 1.7e-38 164.1 241 44.0
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 2.2e-38 163.7 253 46.6
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.2e-38 163.7 254 46.5
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 2.9e-38 163.3 244 45.1
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 2.9e-38 163.3 249 44.2
BolC6t39520H Brassica oleracea HOM05D004212 ORTHO05D005128 5.0e-38 162.5 102 82.4
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 6.5e-38 162.2 244 45.5
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 6.5e-38 162.2 182 54.4
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 1.1e-37 161.4 266 44.4
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 1.4e-37 161.0 227 46.7
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.9e-37 160.6 253 45.8
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 3.2e-37 159.8 249 46.2
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 3.2e-37 159.8 245 45.3
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 4.2e-37 159.5 250 44.4
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 4.2e-37 159.5 256 42.6
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 5.5e-37 159.1 219 46.1
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 9.4e-37 158.3 251 43.0
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 2.1e-36 157.1 247 42.9
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 2.1e-36 157.1 252 42.9
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 4.6e-36 156.0 248 43.1
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 6.1e-36 155.6 252 45.6
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 7.9e-36 155.2 246 41.9
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 1.0e-35 154.8 260 42.7
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 1.8e-35 154.1 253 44.7
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 3.0e-35 153.3 245 42.9
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 3.0e-35 153.3 248 41.5
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 3.9e-35 152.9 252 45.6
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 3.9e-35 152.9 244 46.3
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 5.1e-35 152.5 247 44.9
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 6.7e-35 152.1 259 40.5
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 8.8e-35 151.8 252 43.3
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 1.1e-34 151.4 253 40.7
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 1.5e-34 151.0 246 43.9
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 5.7e-34 149.1 244 41.8
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 5.7e-34 149.1 252 39.7
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 9.7e-34 148.3 230 44.8
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 9.7e-34 148.3 220 42.7
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 4.8e-33 146.0 269 41.3
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 4.8e-33 146.0 269 42.8
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 8.2e-33 145.2 270 42.6
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.4e-32 144.4 148 58.8
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 1.8e-32 144.1 199 47.7
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 1.8e-32 144.1 174 49.4
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 3.1e-32 143.3 253 41.1
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 5.3e-32 142.5 251 41.0
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 5.3e-32 142.5 231 42.9
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 1.2e-31 141.4 184 49.5
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 2.6e-31 140.2 233 43.8
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 3.4e-31 139.8 222 43.2
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 5.9e-31 139.0 221 43.0
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 1.0e-30 138.3 250 38.0
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 3.8e-30 136.3 254 38.6
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 1.1e-29 134.8 227 44.1
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 1.1e-29 134.8 220 42.3
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 1.4e-29 134.4 262 38.9
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 1.9e-29 134.0 239 38.9
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 9.4e-29 131.7 250 36.8
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 3.6e-28 129.8 250 38.0
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 2.3e-27 127.1 260 36.2
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 3.9e-27 126.3 264 36.0
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 3.9e-27 126.3 191 45.5
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 2.4e-24 117.1 119 56.3
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 2.4e-24 117.1 151 47.0
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 3.1e-24 116.7 202 42.6
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 4.1e-24 116.3 221 38.5
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 1.2e-23 114.8 177 41.2
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 1.2e-23 114.8 222 40.1
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 2.0e-23 114.0 177 41.2
Hma1.2p1_0097F.1_g048000 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 2.6e-23 113.6 119 56.3
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 7.7e-23 112.1 256 35.9
BcaC05g26039 Brassica carinata HOM05D004212 ORTHO05D032610 1.0e-22 111.7 94 67.0
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 1.3e-22 111.3 189 43.4
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 2.2e-22 110.5 70 77.1
C05p20210 Brassica napus HOM05D004212 ORTHO05D032610 3.8e-22 109.8 69 82.6
BolC5t30714H Brassica oleracea HOM05D004212 ORTHO05D032610 3.8e-22 109.8 69 82.6
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 1.9e-21 107.5 226 38.1
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 3.2e-21 106.7 152 46.7
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 5.5e-21 105.9 207 36.7
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 5.5e-21 105.9 246 34.6
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 3.6e-20 103.2 122 48.4
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 8.0e-20 102.1 160 39.4
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 2.3e-19 100.5 104 55.8
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 3.0e-19 100.1 118 50.8
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 4.0e-19 99.8 159 39.6
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 1.2e-18 98.2 254 32.3
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 3.5e-15 86.7 146 45.2
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 1.8e-11 74.3 127 42.5
Cfa009861 Carpinus fangiana HOM05D004212 ORTHO05D005128 1.3e-09 68.2 210 30.0
TAR633G2132 Trochodendron aralioides HOM05D004212 ORTHO05D005128 4.5e-07 59.7 56 50.0
BcaC01g05774 Brassica carinata HOM05D004212 ORTHO05D005128 5.9e-07 59.3 58 60.3
Lalb_Chr18g0052541 Lupinus albus HOM05D004212 ORTHO05D005128 8.6e-06 55.5 55 49.1


User provided reference genes

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