Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00209 Brassica carinata HOM05D006196 ORTHO05D007758 3.6e-169 598.2 312 100.0
BolC8t50558H Brassica oleracea HOM05D006196 ORTHO05D007758 3.4e-159 565.1 364 84.6
C08p29520 Brassica napus HOM05D006196 ORTHO05D007758 1.2e-156 556.6 364 83.5
BraA09t40190Z Brassica rapa HOM05D006196 ORTHO05D007758 3.2e-149 531.9 366 79.8
A09p47290 Brassica napus HOM05D006196 ORTHO05D007758 9.6e-146 520.4 366 78.1
Thhalv10010495m.g Eutrema salsugineum HOM05D006196 ORTHO05D007758 5.9e-127 458.0 358 68.4
Sp5g08100 Schrenkiella parvula HOM05D006196 ORTHO05D007758 7.2e-125 451.1 364 66.8
AL5G35330 Arabidopsis lyrata HOM05D006196 ORTHO05D007758 2.2e-121 439.5 365 67.1
Carub.0005s2088 Capsella rubella HOM05D006196 ORTHO05D007758 7.7e-119 431.0 364 65.4
AT3G54290 Arabidopsis thaliana HOM05D006196 ORTHO05D007758 1.7e-118 429.9 364 65.1
CARHR164220 Cardamine hirsuta HOM05D006196 ORTHO05D007758 1.1e-117 427.2 364 65.4
BcaC02g09075 Brassica carinata HOM05D006196 ORTHO05D007758 1.6e-116 423.3 318 69.2
C04p38140 Brassica napus HOM05D006196 ORTHO05D007758 4.6e-116 421.8 313 69.6
BraA04t16248Z Brassica rapa HOM05D006196 ORTHO05D007758 5.7e-114 414.8 316 68.7
BcaB02g08483 Brassica carinata HOM05D006196 ORTHO05D007758 7.4e-114 414.5 365 63.0
A04p05460 Brassica napus HOM05D006196 ORTHO05D007758 2.2e-113 412.9 363 62.5
Aa31sc392G30 Aethionema arabicum HOM05D006196 ORTHO05D007758 1.4e-99 367.1 349 57.0
THA.LOC104811342 Tarenaya hassleriana HOM05D006196 ORTHO05D007758 3.7e-97 359.0 363 55.6
Cpa.g.sc56.1 Carica papaya HOM05D006196 ORTHO05D007758 5.0e-78 295.4 354 48.0
CiPaw.13G040700 Carya illinoinensis HOM05D006196 ORTHO05D007758 1.2e-71 274.2 283 52.3
Manes.10G062200 Manihot esculenta HOM05D006196 ORTHO05D007758 4.0e-67 259.2 360 40.8
Dinv10931 Davidia involucrata HOM05D006196 ORTHO05D007758 2.6e-66 256.5 284 48.6
BolC4t25389H Brassica oleracea HOM05D006196 ORTHO05D007758 4.4e-66 255.8 201 66.2
Duzib114G0383 Durio zibethinus HOM05D006196 ORTHO05D007758 7.5e-66 255.0 364 41.5
Thecc.10G115000 Theobroma cacao HOM05D006196 ORTHO05D007758 7.5e-66 255.0 284 50.0
Nitab4.5_0003590g0020 Nicotiana tabacum HOM05D006196 ORTHO05D007758 9.8e-66 254.6 368 41.8
Haze_03294 Corylus avellana HOM05D006196 ORTHO05D007758 1.7e-65 253.8 363 40.5
Hma1.2p1_0457F.1_g156990 Hydrangea macrophylla HOM05D006196 ORTHO05D007758 2.9e-65 253.1 218 56.4
COL.COLO4_29746 Corchorus olitorius HOM05D006196 ORTHO05D007758 3.7e-65 252.7 286 47.2
Manes.07G086900 Manihot esculenta HOM05D006196 ORTHO05D007758 3.7e-65 252.7 362 40.3
Nitab4.5_0002586g0080 Nicotiana tabacum HOM05D006196 ORTHO05D007758 1.1e-64 251.1 368 41.3
Atru.chr12.1044 Acer truncatum HOM05D006196 ORTHO05D007758 2.4e-64 250.0 361 43.8
Sed0021157 Sechium edule HOM05D006196 ORTHO05D007758 4.1e-64 249.2 218 56.9
Gorai.012G020000 Gossypium raimondii HOM05D006196 ORTHO05D007758 9.2e-64 248.1 358 41.6
Oeu026604.1 Olea europaea HOM05D006196 ORTHO05D007758 1.6e-63 247.3 282 46.8
ClCG08G008290 Citrullus lanatus HOM05D006196 ORTHO05D007758 4.6e-63 245.7 218 54.1
Gohir.D04G017300 Gossypium hirsutum HOM05D006196 ORTHO05D007758 1.3e-62 244.2 358 41.3
CANSAT56G0980 Cannabis sativa HOM05D006196 ORTHO05D007758 2.3e-62 243.4 284 48.2
Lsat_1_v5_gn_2_104380 Lactuca sativa HOM05D006196 ORTHO05D007758 3.9e-62 242.7 218 55.5
Migut.F00871 Erythranthe guttata HOM05D006196 ORTHO05D007758 6.6e-62 241.9 283 46.6
CsaV3_6G004260 Cucumis sativus L. HOM05D006196 ORTHO05D007758 8.6e-62 241.5 218 53.2
Gohir.A05G398600 Gossypium hirsutum HOM05D006196 ORTHO05D007758 8.6e-62 241.5 358 41.1
QL04p046737 Quercus lobata HOM05D006196 ORTHO05D007758 8.6e-62 241.5 294 46.9
Sed0008038 Sechium edule HOM05D006196 ORTHO05D007758 8.6e-62 241.5 279 48.0
Cc02_g09600 Coffea canephora HOM05D006196 ORTHO05D007758 1.1e-61 241.1 285 46.7
MELO3C019897.2 Cucumis melo HOM05D006196 ORTHO05D007758 1.1e-61 241.1 218 52.8
CSS0023098 Camellia sinensis var. sinensis HOM05D006196 ORTHO05D007758 1.9e-61 240.4 285 47.0
PGSC0003DMG400023969 Solanum tuberosum HOM05D006196 ORTHO05D007758 3.3e-61 239.6 280 45.7
CAN.G645.29 Capsicum annuum HOM05D006196 ORTHO05D007758 4.3e-61 239.2 365 40.0
Solyc11g006830.2 Solanum lycopersicum HOM05D006196 ORTHO05D007758 7.3e-61 238.4 280 45.7
Actinidia18628 Actinidia chinensis HOM05D006196 ORTHO05D007758 9.5e-61 238.0 282 46.5
Sopen11g002750 Solanum pennellii HOM05D006196 ORTHO05D007758 9.5e-61 238.0 280 45.7
SalBow6G5730 Salvia bowleyana HOM05D006196 ORTHO05D007758 1.6e-60 237.3 284 46.1
Sabra08G0013000 Salix brachista HOM05D006196 ORTHO05D007758 2.1e-60 236.9 356 38.8
MSTRG.27569 Avicennia marina HOM05D006196 ORTHO05D007758 3.6e-60 236.1 288 44.4
MSTRG.9056 Avicennia marina HOM05D006196 ORTHO05D007758 3.6e-60 236.1 289 45.7
TAR623G1022 Trochodendron aralioides HOM05D006196 ORTHO05D007758 4.7e-60 235.7 218 54.1
ECA238G1493 Erigeron canadensis HOM05D006196 ORTHO05D007758 1.1e-59 234.6 218 55.0
Glyma.20G111300 Glycine max HOM05D006196 ORTHO05D007758 1.1e-59 234.6 239 51.5
Rhsim03G0097800 Rhododendron simsii HOM05D006196 ORTHO05D007758 1.8e-59 233.8 288 45.8
HanXRQChr11g0342081 Helianthus annuus HOM05D006196 ORTHO05D007758 2.3e-59 233.4 217 54.4
Potri.008G019700 Populus trichocarpa HOM05D006196 ORTHO05D007758 2.3e-59 233.4 356 38.8
Peaxi162Scf00173g00018 Petunia axillaris HOM05D006196 ORTHO05D007758 3.1e-59 233.0 281 45.6
Lj5g0013601 Lotus japonicus HOM05D006196 ORTHO05D007758 4.0e-59 232.6 215 54.9
Glyma.10G278400 Glycine max HOM05D006196 ORTHO05D007758 5.2e-59 232.3 236 52.1
Lj2C33T17 Lonicera japonica HOM05D006196 ORTHO05D007758 2.6e-58 229.9 225 52.4
Sabra10G0187700 Salix brachista HOM05D006196 ORTHO05D007758 2.6e-58 229.9 358 38.3
TWI38G1704 Tripterygium wilfordii HOM05D006196 ORTHO05D007758 5.8e-58 228.8 219 51.6
HanXRQChr07g0194291 Helianthus annuus HOM05D006196 ORTHO05D007758 9.8e-58 228.0 219 53.9
Psat0s1903g0040 Pisum sativum HOM05D006196 ORTHO05D007758 9.8e-58 228.0 230 51.3
unitig_37.g12349 Utricularia gibba HOM05D006196 ORTHO05D007758 1.3e-57 227.6 284 45.1
VMungo0720G0291 Vigna mungo HOM05D006196 ORTHO05D007758 2.2e-57 226.9 225 50.7
Medtr1g111960 Medicago truncatula HOM05D006196 ORTHO05D007758 2.9e-57 226.5 296 43.6
Potri.010G239700 Populus trichocarpa HOM05D006196 ORTHO05D007758 3.7e-57 226.1 358 36.6
Phvul.007G023000 Phaseolus vulgaris HOM05D006196 ORTHO05D007758 1.1e-56 224.6 226 50.4
Ca_25660_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 1.9e-56 223.8 233 49.4
arahy.Tifrunner.gnm1.ann1.EL78PJ Arachis hypogaea HOM05D006196 ORTHO05D007758 1.2e-55 221.1 233 48.5
arahy.Tifrunner.gnm1.ann1.N25XM0 Arachis hypogaea HOM05D006196 ORTHO05D007758 6.0e-55 218.8 233 47.6
Lalb_Chr06g0166391 Lupinus albus HOM05D006196 ORTHO05D007758 8.6e-54 214.9 225 46.2
MBI01_g16486_MAGBIO Magnolia biondii HOM05D006196 ORTHO05D007758 1.1e-53 214.5 298 42.3
SGA_v2.0_scaffold13G06435 Striga asiatica HOM05D006196 ORTHO05D007758 1.1e-53 214.5 334 40.4
Sc09g0005310 Simmondsia chinensis HOM05D006196 ORTHO05D007758 1.9e-53 213.8 318 38.7
TPR.G2427 Trifolium pratense HOM05D006196 ORTHO05D007758 1.6e-52 210.7 296 41.2
GSVIVG01010724001 Vitis vinifera HOM05D006196 ORTHO05D007758 1.6e-52 210.7 176 59.7
PSO801G0620 Papaver somniferum HOM05D006196 ORTHO05D007758 8.1e-52 208.4 221 49.8
PSO339G1429 Papaver somniferum HOM05D006196 ORTHO05D007758 4.0e-51 206.1 224 48.7
Glyma.10G111100 Glycine max HOM05D006196 ORTHO05D007758 5.2e-51 205.7 243 46.9
Medtr1g050385 Medicago truncatula HOM05D006196 ORTHO05D007758 5.8e-50 202.2 313 37.7
Psat6g093840 Pisum sativum HOM05D006196 ORTHO05D007758 7.6e-50 201.8 255 43.5
Hund06787 Selenicereus undatus HOM05D006196 ORTHO05D007758 1.7e-49 200.7 216 46.8
Lj6g0028083 Lotus japonicus HOM05D006196 ORTHO05D007758 1.1e-48 198.0 249 43.4
TPR.G10627 Trifolium pratense HOM05D006196 ORTHO05D007758 2.1e-47 193.7 248 41.5
CDE08G0664 Ceratophyllum demersum HOM05D006196 ORTHO05D007758 2.7e-47 193.4 221 44.8
DCAR_019003 Daucus carota HOM05D006196 ORTHO05D007758 7.8e-47 191.8 288 40.3
Ah.13g074540 Amaranthus hybridus HOM05D006196 ORTHO05D007758 1.1e-45 188.0 250 43.2
Ciclev10015947m.g Citrus clementina HOM05D006196 ORTHO05D007758 8.1e-44 181.8 343 36.4
Lalb_Chr01g0010431 Lupinus albus HOM05D006196 ORTHO05D007758 6.9e-43 178.7 318 39.9
Ah.06g186650 Amaranthus hybridus HOM05D006196 ORTHO05D007758 2.6e-42 176.8 373 33.2
Prupe.2G067800 Prunus persica HOM05D006196 ORTHO05D007758 1.0e-38 164.9 177 47.5
MD07G1059000 Malus domestica HOM05D006196 ORTHO05D007758 1.7e-38 164.1 245 39.2
MD07G1059300 Malus domestica HOM05D006196 ORTHO05D007758 6.2e-36 155.6 177 45.8
Ca_20266_v3 Cicer arietinum L. HOM05D006196 ORTHO05D007758 5.3e-35 152.5 184 43.5
ATR0820G221 Amborella trichopoda HOM05D006196 ORTHO05D007758 3.9e-30 136.3 158 43.0
SMO146G0289 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 1.9e-29 134.0 201 38.3
HPP92_026086 Vanilla planifolia HOM05D006196 ORTHO05D007758 7.4e-29 132.1 216 38.0
HPP92_025137 Vanilla planifolia HOM05D006196 ORTHO05D007758 6.9e-27 125.6 216 37.5
unitig_46.g18638 Utricularia gibba HOM05D006196 ORTHO05D007758 2.7e-23 113.6 94 59.6
Mapoly0016s0155 Marchantia polymorpha HOM05D006196 ORTHO05D007758 7.9e-23 112.1 184 35.3
AagrBONN_evm.TU.Sc2ySwM_228.4853 Anthoceros agrestis HOM05D006196 ORTHO05D007758 7.4e-21 105.5 144 43.8
Pp3c16_23080 Physcomitrium patens HOM05D006196 ORTHO05D007758 6.9e-19 99.0 146 35.6
Os01g0861700 Oryza sativa ssp. japonica HOM05D006196 ORTHO05D007758 1.2e-18 98.2 296 27.7
Pp3c25_11830 Physcomitrium patens HOM05D006196 ORTHO05D007758 2.6e-18 97.1 146 34.9
Zm00001eb147080 Zea mays HOM05D006196 ORTHO05D007758 3.4e-18 96.7 297 27.3
Pp3c13_16840 Physcomitrium patens HOM05D006196 ORTHO05D007758 4.9e-17 92.8 139 36.0
Pp3c6_4750 Physcomitrium patens HOM05D006196 ORTHO05D007758 6.5e-17 92.4 147 36.1
SMO198G0051 Selaginella moellendorffii HOM05D006196 ORTHO05D007758 4.2e-16 89.7 161 31.7
Pp3c12_15440 Physcomitrium patens HOM05D006196 ORTHO05D007758 1.0e-14 85.1 134 34.3
Pp3c3_21020 Physcomitrium patens HOM05D006196 ORTHO05D007758 3.0e-14 83.6 139 34.5
Pp3c25_11860 Physcomitrium patens HOM05D006196 ORTHO05D007758 4.3e-13 79.7 208 27.9
Pp3c16_23090 Physcomitrium patens HOM05D006196 ORTHO05D007758 5.7e-13 79.3 144 33.3
unitig_46.g18639 Utricularia gibba HOM05D006196 ORTHO05D007758 3.7e-12 76.6 134 37.3
CBR_g31351 Chara braunii HOM05D006196 ORTHO05D007758 6.3e-12 75.9 111 42.3


User provided reference genes

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