Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00141 Brassica carinata HOM05D005940 ORTHO05D007027 1.1e-201 706.4 351 100.0
BolC8t50626H Brassica oleracea HOM05D005940 ORTHO05D007027 7.4e-179 630.6 350 90.0
BraA09t40251Z Brassica rapa HOM05D005940 ORTHO05D007027 4.1e-177 624.8 350 89.1
BcaNung04648 Brassica carinata HOM05D005940 ORTHO05D007027 1.7e-175 619.4 350 88.6
A09p47960 Brassica napus HOM05D005940 ORTHO05D007027 5.9e-168 594.3 333 90.1
C08p30200 Brassica napus HOM05D005940 ORTHO05D007027 1.0e-167 593.6 333 89.2
Sp5g07450 Schrenkiella parvula HOM05D005940 ORTHO05D007027 1.9e-166 589.3 360 84.2
AL5G36080 Arabidopsis lyrata HOM05D005940 ORTHO05D007027 4.8e-162 574.7 358 81.6
Thhalv10010491m.g Eutrema salsugineum HOM05D005940 ORTHO05D007027 3.8e-159 565.1 361 80.9
Carub.0005s2159 Capsella rubella HOM05D005940 ORTHO05D007027 1.1e-153 547.0 357 79.0
CARHR164970 Cardamine hirsuta HOM05D005940 ORTHO05D007027 3.8e-151 538.5 358 79.1
Aa31sc33G20 Aethionema arabicum HOM05D005940 ORTHO05D007027 1.7e-138 496.5 375 70.4
THA.LOC104809986 Tarenaya hassleriana HOM05D005940 ORTHO05D007027 1.9e-121 439.9 359 65.2
AT3G54970 Arabidopsis thaliana HOM05D005940 ORTHO05D007027 2.8e-109 399.4 260 79.6
Cfa001588 Carpinus fangiana HOM05D005940 ORTHO05D007027 3.6e-101 372.5 368 54.9
BcaNung04643 Brassica carinata HOM05D005940 ORTHO05D007027 1.4e-100 370.5 271 73.8
Gorai.012G093100 Gossypium raimondii HOM05D005940 ORTHO05D007027 3.1e-100 369.4 372 55.9
CiPaw.02G177100 Carya illinoinensis HOM05D005940 ORTHO05D007027 3.4e-99 365.9 366 54.9
QL08p056963 Quercus lobata HOM05D005940 ORTHO05D007027 5.8e-99 365.2 368 56.0
GSVIVG01016348001 Vitis vinifera HOM05D005940 ORTHO05D007027 5.8e-99 365.2 361 55.7
Cc09_g02600 Coffea canephora HOM05D005940 ORTHO05D007027 4.9e-98 362.1 356 52.8
Hma1.2p1_0192F.1_g083550 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 6.4e-98 361.7 375 52.3
Duzib114G0016 Durio zibethinus HOM05D005940 ORTHO05D007027 2.4e-97 359.8 370 55.1
TAR623G0325 Trochodendron aralioides HOM05D005940 ORTHO05D007027 3.9e-95 352.4 370 52.4
FAN06G4195 Fragaria x ananassa HOM05D005940 ORTHO05D007027 5.6e-94 348.6 355 52.4
Migut.F01794 Erythranthe guttata HOM05D005940 ORTHO05D007027 7.3e-94 348.2 353 54.1
Nn2g10645 Nelumbo nucifera HOM05D005940 ORTHO05D007027 7.3e-94 348.2 347 54.8
Atru.chr12.628 Acer truncatum HOM05D005940 ORTHO05D007027 9.6e-94 347.8 358 55.3
ClCG02G013840 Citrullus lanatus HOM05D005940 ORTHO05D007027 9.6e-94 347.8 365 51.0
FAN10G2498 Fragaria x ananassa HOM05D005940 ORTHO05D007027 1.6e-93 347.1 357 52.7
Oeu055049.1 Olea europaea HOM05D005940 ORTHO05D007027 1.6e-93 347.1 365 51.8
Eucgr.G02795 Eucalyptus grandis HOM05D005940 ORTHO05D007027 8.1e-93 344.7 364 54.4
Potri.010G216500 Populus trichocarpa HOM05D005940 ORTHO05D007027 8.1e-93 344.7 357 53.8
RcHm_v2.0_Chr1g0364231 Rosa chinensis HOM05D005940 ORTHO05D007027 1.4e-92 344.0 350 52.3
CANSAT25G0128 Cannabis sativa HOM05D005940 ORTHO05D007027 3.1e-92 342.8 372 49.7
Gohir.D04G082400 Gossypium hirsutum HOM05D005940 ORTHO05D007027 4.0e-92 342.4 373 53.6
DCAR_019137 Daucus carota HOM05D005940 ORTHO05D007027 2.0e-91 340.1 344 54.1
Sed0018989 Sechium edule HOM05D005940 ORTHO05D007027 2.0e-91 340.1 359 51.8
CsaV3_5G006320 Cucumis sativus L. HOM05D005940 ORTHO05D007027 2.6e-91 339.7 365 50.7
Glyma.20G145700 Glycine max HOM05D005940 ORTHO05D007027 1.3e-90 337.4 368 50.5
Ciclev10033357m.g Citrus clementina HOM05D005940 ORTHO05D007027 2.2e-90 336.7 379 52.0
PGR102G2278 Punica granatum HOM05D005940 ORTHO05D007027 2.2e-90 336.7 355 51.5
FAN01G1689 Fragaria x ananassa HOM05D005940 ORTHO05D007027 3.8e-90 335.9 353 52.4
Solyc04g049890.4 Solanum lycopersicum HOM05D005940 ORTHO05D007027 4.9e-90 335.5 356 52.2
ECA232G2986 Erigeron canadensis HOM05D005940 ORTHO05D007027 6.4e-90 335.1 368 50.5
FvH4_7g20280 Fragaria vesca HOM05D005940 ORTHO05D007027 6.4e-90 335.1 341 52.5
PGSC0003DMG400010575 Solanum tuberosum HOM05D005940 ORTHO05D007027 6.4e-90 335.1 362 51.7
TWI38G0416 Tripterygium wilfordii HOM05D005940 ORTHO05D007027 1.4e-89 334.0 364 53.0
Lsat_1_v5_gn_1_128021 Lactuca sativa HOM05D005940 ORTHO05D007027 7.1e-89 331.6 358 51.7
PSO170G0010 Papaver somniferum HOM05D005940 ORTHO05D007027 1.6e-88 330.5 361 51.2
Prupe.2G219400 Prunus persica HOM05D005940 ORTHO05D007027 2.1e-88 330.1 356 51.1
Prupe.2G216400 Prunus persica HOM05D005940 ORTHO05D007027 3.5e-88 329.3 356 51.1
Aqoxy7G03246 Aquilegia oxysepala HOM05D005940 ORTHO05D007027 4.6e-88 328.9 364 50.0
Nitab4.5_0000061g0280 Nicotiana tabacum HOM05D005940 ORTHO05D007027 4.6e-88 328.9 349 52.1
PSO357G0422 Papaver somniferum HOM05D005940 ORTHO05D007027 6.0e-88 328.6 361 51.0
Phvul.007G056900 Phaseolus vulgaris HOM05D005940 ORTHO05D007027 3.0e-87 326.2 362 49.2
Medtr1g030720 Medicago truncatula HOM05D005940 ORTHO05D007027 5.1e-87 325.5 366 48.4
Medtr1g103900 Medicago truncatula HOM05D005940 ORTHO05D007027 5.1e-87 325.5 366 47.8
Lj5g0027680 Lotus japonicus HOM05D005940 ORTHO05D007027 6.7e-87 325.1 370 48.1
MD01G1112500 Malus domestica HOM05D005940 ORTHO05D007027 6.7e-87 325.1 359 50.7
Lalb_Chr21g0304671 Lupinus albus HOM05D005940 ORTHO05D007027 8.7e-87 324.7 359 51.0
Sopen04g020430 Solanum pennellii HOM05D005940 ORTHO05D007027 8.7e-87 324.7 363 50.7
Medtr1g103870 Medicago truncatula HOM05D005940 ORTHO05D007027 1.9e-86 323.6 370 48.9
Lj1A925T62 Lonicera japonica HOM05D005940 ORTHO05D007027 7.4e-86 321.6 348 50.9
Peaxi162Scf00208g00211 Petunia axillaris HOM05D005940 ORTHO05D007027 1.6e-85 320.5 362 49.7
HanXRQChr16g0510921 Helianthus annuus HOM05D005940 ORTHO05D007027 5.3e-84 315.5 359 51.3
TPR.G5540 Trifolium pratense HOM05D005940 ORTHO05D007027 1.2e-83 314.3 368 47.0
VMungo0720G1649 Vigna mungo HOM05D005940 ORTHO05D007027 2.6e-83 313.2 334 51.2
arahy.Tifrunner.gnm1.ann1.N3JKH2 Arachis hypogaea HOM05D005940 ORTHO05D007027 5.8e-83 312.0 361 48.2
Thecc.10G067000 Theobroma cacao HOM05D005940 ORTHO05D007027 1.9e-81 307.0 305 55.1
Dinv31364 Davidia involucrata HOM05D005940 ORTHO05D007027 2.7e-80 303.1 306 54.6
Psat6g207800 Pisum sativum HOM05D005940 ORTHO05D007027 4.6e-80 302.4 340 49.4
arahy.Tifrunner.gnm1.ann1.3UA0UH Arachis hypogaea HOM05D005940 ORTHO05D007027 2.3e-79 300.1 361 47.4
FAN03G1319 Fragaria x ananassa HOM05D005940 ORTHO05D007027 8.7e-79 298.1 310 51.9
Ca_10908_v3 Cicer arietinum L. HOM05D005940 ORTHO05D007027 4.3e-78 295.8 337 48.7
AUR62027909 Chenopodium quinoa HOM05D005940 ORTHO05D007027 1.6e-77 293.9 363 48.2
AUR62020800 Chenopodium quinoa HOM05D005940 ORTHO05D007027 2.6e-75 286.6 317 51.1
SalBow3G3596 Salvia bowleyana HOM05D005940 ORTHO05D007027 1.2e-72 277.7 350 47.4
EL10Ac2g03550 Beta vulgaris HOM05D005940 ORTHO05D007027 2.1e-72 276.9 338 48.2
COL.COLO4_23758 Corchorus olitorius HOM05D005940 ORTHO05D007027 1.3e-71 274.2 256 58.6
Hma1.2p1_0192F.1_g083560 Hydrangea macrophylla HOM05D005940 ORTHO05D007027 1.3e-71 274.2 249 57.8
MELO3C011725.2 Cucumis melo HOM05D005940 ORTHO05D007027 5.7e-70 268.9 304 48.7
HPP92_019787 Vanilla planifolia HOM05D005940 ORTHO05D007027 5.7e-70 268.9 341 46.6
CDE11G0619 Ceratophyllum demersum HOM05D005940 ORTHO05D007027 7.4e-70 268.5 331 43.5
Gohir.A05G343900 Gossypium hirsutum HOM05D005940 ORTHO05D007027 8.2e-69 265.0 281 54.8
Cpa.g.sc1.266 Carica papaya HOM05D005940 ORTHO05D007027 5.3e-68 262.3 282 55.0
CAN.G693.9 Capsicum annuum HOM05D005940 ORTHO05D007027 2.6e-67 260.0 289 49.8
SGA_v2.0_scaffold122G33246 Striga asiatica HOM05D005940 ORTHO05D007027 3.4e-67 259.6 344 46.2
Zm00001eb194920 Zea mays HOM05D005940 ORTHO05D007027 6.5e-66 255.4 339 46.3
Nitab4.5_0003582g0030 Nicotiana tabacum HOM05D005940 ORTHO05D007027 3.9e-63 246.1 260 50.4
Manes.10G041400 Manihot esculenta HOM05D005940 ORTHO05D007027 6.7e-63 245.4 286 50.0
Sabra10G0167600 Salix brachista HOM05D005940 ORTHO05D007027 4.3e-62 242.7 274 50.4
Rhsim09G0154600 Rhododendron simsii HOM05D005940 ORTHO05D007027 9.7e-62 241.5 274 51.5
ATR0594G026 Amborella trichopoda HOM05D005940 ORTHO05D007027 4.1e-60 236.1 273 48.0
Haze_16942 Corylus avellana HOM05D005940 ORTHO05D007027 1.9e-57 227.3 244 51.2
Pp3c1_190 Physcomitrium patens HOM05D005940 ORTHO05D007027 1.8e-52 210.7 352 38.6
Mapoly0016s0023 Marchantia polymorpha HOM05D005940 ORTHO05D007027 3.1e-52 209.9 366 37.2
AagrBONN_evm.TU.Sc2ySwM_344.1014 Anthoceros agrestis HOM05D005940 ORTHO05D007027 3.5e-51 206.5 351 38.5
Sc06g0001810 Simmondsia chinensis HOM05D005940 ORTHO05D007027 6.5e-50 202.2 173 60.1
SMO329G0058 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 2.3e-47 193.7 302 41.4
PGR142G2620 Punica granatum HOM05D005940 ORTHO05D007027 3.0e-47 193.4 212 50.9
SMO201G0153 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 2.0e-46 190.7 342 35.7
Hund22470 Selenicereus undatus HOM05D005940 ORTHO05D007027 7.4e-46 188.7 322 37.9
SEGI_22112 Sequoiadendron giganteum HOM05D005940 ORTHO05D007027 6.3e-37 159.1 242 40.1
Os02g0252600 Oryza sativa ssp. japonica HOM05D005940 ORTHO05D007027 6.5e-34 149.1 219 42.5
CSS0031020 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 1.9e-33 147.5 195 45.6
CBR_g3301 Chara braunii HOM05D003248 ORTHO05D000301 1.3e-29 134.8 457 28.2
unitig_46.g18613 Utricularia gibba HOM05D005940 ORTHO05D007027 1.0e-26 125.2 197 39.6
Medtr1g030710 Medicago truncatula HOM05D005940 ORTHO05D007027 5.0e-26 122.9 213 39.4
SHI28162 Sapria himalayana HOM05D005940 ORTHO05D007027 8.3e-21 105.5 160 41.2
MBI14_g28170_MAGBIO Magnolia biondii HOM05D005940 ORTHO05D007027 5.4e-20 102.8 91 59.3
FAN06G2675 Fragaria x ananassa HOM05D005940 ORTHO05D007027 5.6e-17 92.8 227 34.8
Sopen09g009530 Solanum pennellii HOM05D005940 ORTHO05D007027 9.5e-17 92.0 84 52.4
Haze_16941 Corylus avellana HOM05D005940 ORTHO05D007027 1.4e-15 88.2 129 42.6
SHI28160 Sapria himalayana HOM05D000105 ORTHO05D000023 2.3e-15 87.4 65 66.2
SEGI_30186 Sequoiadendron giganteum HOM05D005940 ORTHO05D007027 1.2e-14 85.1 92 40.2
ECA240G2370 Erigeron canadensis HOM05D005940 ORTHO05D007027 1.5e-14 84.7 75 53.3
MCO14G149 Micromonas commoda HOM05D005940 ORTHO05D007027 1.3e-13 81.6 294 28.2
Cre01.g033516 Chlamydomonas reinhardtii HOM05D005940 ORTHO05D007027 1.7e-13 81.3 171 31.0
PRCOL_00002492 Prasinoderma coloniale HOM05D005940 ORTHO05D007027 8.3e-13 79.0 138 36.2
CSS0028355 Camellia sinensis var. sinensis HOM05D005940 ORTHO05D007027 4.7e-08 63.2 35 80.0
PRCOL_00002155 Prasinoderma coloniale HOM05D005940 ORTHO05D007027 6.2e-08 62.8 187 31.0
SMO112G0074 Selaginella moellendorffii HOM05D005940 ORTHO05D007027 6.2e-08 62.8 173 31.2
HPP92_019693 Vanilla planifolia HOM05D005940 ORTHO05D002769 8.9e-07 58.9 57 50.9
TPR.G40057 Trifolium pratense HOM05D005940 ORTHO05D007027 1.2e-06 58.5 68 41.2
PRCOL_00006890 Prasinoderma coloniale HOM05D005940 ORTHO05D007027 4.4e-06 56.6 295 22.7
Cre01.g033763 Chlamydomonas reinhardtii HOM05D005940 ORTHO05D007027 9.8e-06 55.5 78 39.7


User provided reference genes

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