Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00114 Brassica carinata HOM05D002933 ORTHO05D007742 1.7e-24 115.2 57 100.0
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 9.3e-23 109.4 53 98.1
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 2.1e-22 108.2 53 96.2
C04p37150 Brassica napus HOM05D002933 ORTHO05D007742 2.1e-22 108.2 53 96.2
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 2.1e-22 108.2 53 96.2
AL5G36450 Arabidopsis lyrata HOM05D002933 ORTHO05D007742 3.5e-22 107.5 53 96.2
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 3.5e-22 107.5 53 96.2
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 6.0e-22 106.7 53 94.3
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 7.9e-22 106.3 53 94.3
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 7.9e-22 106.3 53 94.3
Sp5g07140 Schrenkiella parvula HOM05D002933 ORTHO05D007742 7.9e-22 106.3 53 94.3
AT3G55330 Arabidopsis thaliana HOM05D002933 ORTHO05D007742 1.0e-21 105.9 53 92.5
CARHR165310 Cardamine hirsuta HOM05D002933 ORTHO05D007742 1.0e-21 105.9 53 92.5
Aa31LG10G10340 Aethionema arabicum HOM05D002933 ORTHO05D007742 3.3e-20 100.9 51 94.1
TAR623G1509 Trochodendron aralioides HOM05D002933 ORTHO05D007742 2.8e-19 97.8 53 83.0
TAR623G1657 Trochodendron aralioides HOM05D002933 ORTHO05D007742 2.8e-19 97.8 53 83.0
COL.COLO4_14919 Corchorus olitorius HOM05D002933 ORTHO05D007742 6.3e-19 96.7 53 83.0
MELO3C025475.2 Cucumis melo HOM05D002933 ORTHO05D007742 1.4e-18 95.5 53 81.1
Dinv22762 Davidia involucrata HOM05D002933 ORTHO05D007742 1.8e-18 95.1 53 83.0
Duzib114G0859 Durio zibethinus HOM05D002933 ORTHO05D007742 1.8e-18 95.1 53 81.1
Gohir.D05G300200 Gossypium hirsutum HOM05D002933 ORTHO05D007742 1.8e-18 95.1 53 81.1
Gorai.009G317700 Gossypium raimondii HOM05D002933 ORTHO05D007742 1.8e-18 95.1 53 81.1
Os08g0347500 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.8e-18 95.1 53 81.1
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 1.8e-18 95.1 53 81.1
PGR142G2901 Punica granatum HOM05D002933 ORTHO05D007742 1.8e-18 95.1 51 86.3
Ciclev10032564m.g Citrus clementina HOM05D002933 ORTHO05D007742 2.4e-18 94.7 53 79.2
Cc11_g04720 Coffea canephora HOM05D002933 ORTHO05D007742 2.4e-18 94.7 53 79.2
Eucgr.G02904 Eucalyptus grandis HOM05D002933 ORTHO05D007742 2.4e-18 94.7 53 81.1
Sc12g0007090 Simmondsia chinensis HOM05D002933 ORTHO05D007742 2.4e-18 94.7 53 81.1
Actinidia18978 Actinidia chinensis HOM05D002933 ORTHO05D007742 3.1e-18 94.4 53 81.1
Actinidia35046 Actinidia chinensis HOM05D002933 ORTHO05D007742 3.1e-18 94.4 53 81.1
CsaV3_5G026220 Cucumis sativus L. HOM05D002933 ORTHO05D007742 3.1e-18 94.4 53 79.2
Peaxi162Scf01223g00010 Petunia axillaris HOM05D002933 ORTHO05D007742 3.1e-18 94.4 53 79.2
Sed0016692 Sechium edule HOM05D002933 ORTHO05D007742 3.1e-18 94.4 53 77.4
Migut.B00505 Erythranthe guttata HOM05D002933 ORTHO05D007742 4.1e-18 94.0 53 79.2
Manes.10G038112 Manihot esculenta HOM05D002933 ORTHO05D007742 4.1e-18 94.0 53 79.2
QL08p058666 Quercus lobata HOM05D002933 ORTHO05D007742 4.1e-18 94.0 53 77.4
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 4.1e-18 94.0 53 79.2
Cpa.g.sc1.346 Carica papaya HOM05D002933 ORTHO05D007742 5.3e-18 93.6 53 79.2
SalBow5G4018 Salvia bowleyana HOM05D002933 ORTHO05D007742 5.3e-18 93.6 53 77.4
Thecc.10G052500 Theobroma cacao HOM05D002933 ORTHO05D007742 5.3e-18 93.6 53 81.1
MSTRG.22954 Avicennia marina HOM05D002933 ORTHO05D007742 6.9e-18 93.2 53 77.4
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 6.9e-18 93.2 53 77.4
Nitab4.5_0001723g0030 Nicotiana tabacum HOM05D002933 ORTHO05D007742 6.9e-18 93.2 53 77.4
Nitab4.5_0001797g0060 Nicotiana tabacum HOM05D002933 ORTHO05D007742 6.9e-18 93.2 53 77.4
Potri.010G210200 Populus trichocarpa HOM05D002933 ORTHO05D007742 6.9e-18 93.2 53 79.2
Sabra10G0162500 Salix brachista HOM05D002933 ORTHO05D007742 6.9e-18 93.2 53 79.2
Hund09944 Selenicereus undatus HOM05D002933 ORTHO05D007742 6.9e-18 93.2 53 77.4
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 6.9e-18 93.2 53 75.5
ClCG09G020230 Citrullus lanatus HOM05D002933 ORTHO05D007742 9.0e-18 92.8 53 73.6
Rhsim12G0149400 Rhododendron simsii HOM05D002933 ORTHO05D007742 9.0e-18 92.8 53 79.2
THA.LOC104824268 Tarenaya hassleriana HOM05D002933 ORTHO05D007742 9.0e-18 92.8 53 81.1
CANSAT56G0382 Cannabis sativa HOM05D002933 ORTHO05D007742 1.2e-17 92.4 53 75.5
Manes.07G111100 Manihot esculenta HOM05D002933 ORTHO05D007742 1.2e-17 92.4 53 77.4
GSVIVG01016618001 Vitis vinifera HOM05D002933 ORTHO05D007742 1.2e-17 92.4 53 79.2
arahy.Tifrunner.gnm1.ann1.55TXVJ Arachis hypogaea HOM05D002933 ORTHO05D007742 1.5e-17 92.0 53 79.2
arahy.Tifrunner.gnm1.ann1.XEQF22 Arachis hypogaea HOM05D002933 ORTHO05D007742 1.5e-17 92.0 53 79.2
Lj1g0025916 Lotus japonicus HOM05D002933 ORTHO05D007742 1.5e-17 92.0 53 77.4
SGA_v2.0_scaffold28G11736 Striga asiatica HOM05D002933 ORTHO05D007742 1.5e-17 92.0 53 73.6
Aqoxy4G03028 Aquilegia oxysepala HOM05D002933 ORTHO05D007742 2.0e-17 91.7 53 77.4
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 2.0e-17 91.7 53 75.5
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 2.0e-17 91.7 53 75.5
SGA_v2.0_scaffold28G11731 Striga asiatica HOM05D002933 ORTHO05D007742 2.0e-17 91.7 53 71.7
VMungo1383G1673 Vigna mungo HOM05D002933 ORTHO05D007742 2.0e-17 91.7 52 80.8
Gohir.A05G300500 Gossypium hirsutum HOM05D002933 ORTHO05D007742 2.6e-17 91.3 53 79.2
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 2.6e-17 91.3 53 73.6
Glyma.02G094900 Glycine max HOM05D002933 ORTHO05D007742 3.4e-17 90.9 52 80.8
Glyma.18G286500 Glycine max HOM05D002933 ORTHO05D007742 3.4e-17 90.9 52 80.8
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 3.4e-17 90.9 53 73.6
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 3.4e-17 90.9 53 73.6
CiPaw.02G180700 Carya illinoinensis HOM05D002933 ORTHO05D007742 4.5e-17 90.5 51 80.4
vmacro16485 Vaccinium macrocarpon HOM05D002933 ORTHO05D007742 5.9e-17 90.1 53 73.6
CSS0020461 Camellia sinensis var. sinensis HOM05D002933 ORTHO05D007742 7.6e-17 89.7 51 80.4
CSS0042513 Camellia sinensis var. sinensis HOM05D002933 ORTHO05D007742 7.6e-17 89.7 51 80.4
Hma1.2p1_0060F.1_g032910 Hydrangea macrophylla HOM05D002933 ORTHO05D007742 7.6e-17 89.7 51 80.4
Hma1.2p1_0060F.1_g032920 Hydrangea macrophylla HOM05D002933 ORTHO05D007742 7.6e-17 89.7 51 80.4
Phvul.008G015100 Phaseolus vulgaris HOM05D002933 ORTHO05D007742 7.6e-17 89.7 51 80.4
unitig_52.g17502 Utricularia gibba HOM05D002933 ORTHO05D007742 7.6e-17 89.7 53 71.7
ECA246G3602 Erigeron canadensis HOM05D002933 ORTHO05D007742 1.0e-16 89.4 53 73.6
Medtr7g023290 Medicago truncatula HOM05D002933 ORTHO05D007742 1.0e-16 89.4 51 80.4
Nn2g10494 Nelumbo nucifera HOM05D002933 ORTHO05D007742 1.0e-16 89.4 53 73.6
Haze_17012 Corylus avellana HOM05D002933 ORTHO05D007742 1.3e-16 89.0 53 75.5
DCAR_022334 Daucus carota HOM05D005534 ORTHO05D006642 1.3e-16 89.0 50 78.0
ATR0033G026 Amborella trichopoda HOM05D002933 ORTHO05D007742 1.7e-16 88.6 51 80.4
Psat6g169400 Pisum sativum HOM05D002933 ORTHO05D007742 2.2e-16 88.2 51 78.4
Cfa001530 Carpinus fangiana HOM05D002933 ORTHO05D007742 2.9e-16 87.8 53 73.6
Ca_07202_v3 Cicer arietinum L. HOM05D002933 ORTHO05D007742 2.9e-16 87.8 52 78.8
TWI38G1573 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 3.8e-16 87.4 53 69.8
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 6.5e-16 86.7 53 67.9
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 6.5e-16 86.7 53 67.9
HanXRQChr05g0154341 Helianthus annuus HOM05D002933 ORTHO05D007742 6.5e-16 86.7 53 69.8
Zm00001eb001650 Zea mays HOM05D002933 ORTHO05D007742 6.5e-16 86.7 53 73.6
Atru.chr12.543 Acer truncatum HOM05D002933 ORTHO05D007742 8.5e-16 86.3 52 75.0
CDE07G0630 Ceratophyllum demersum HOM05D002933 ORTHO05D007742 1.1e-15 85.9 49 81.6
Lalb_Chr10g0091861 Lupinus albus HOM05D002933 ORTHO05D007742 1.4e-15 85.5 53 71.7
Prupe.2G229000 Prunus persica HOM05D002933 ORTHO05D007742 1.9e-15 85.1 53 69.8
MD01G1121300 Malus domestica HOM05D002933 ORTHO05D007742 3.2e-15 84.3 51 74.5
TPR.G15514 Trifolium pratense HOM05D002933 ORTHO05D007742 3.2e-15 84.3 51 76.5
HPP92_016520 Vanilla planifolia HOM05D002933 ORTHO05D007742 3.2e-15 84.3 50 72.0
HPP92_027632 Vanilla planifolia HOM05D002933 ORTHO05D007742 3.2e-15 84.3 50 72.0
CDE04G2678 Ceratophyllum demersum HOM05D002933 ORTHO05D007742 4.2e-15 84.0 49 75.5
Lj9A439T48 Lonicera japonica HOM05D002933 ORTHO05D007742 4.2e-15 84.0 51 70.6
FvH4_7g21370 Fragaria vesca HOM05D002933 ORTHO05D007742 1.2e-14 82.4 51 72.5
FAN01G1038 Fragaria x ananassa HOM05D002933 ORTHO05D007742 1.2e-14 82.4 51 72.5
FAN03G0329 Fragaria x ananassa HOM05D002933 ORTHO05D007742 1.2e-14 82.4 51 72.5
FAN06G1816 Fragaria x ananassa HOM05D002933 ORTHO05D007742 1.2e-14 82.4 51 72.5
FAN06G3199 Fragaria x ananassa HOM05D002933 ORTHO05D007742 1.2e-14 82.4 51 72.5
FAN10G2797 Fragaria x ananassa HOM05D002933 ORTHO05D007742 1.2e-14 82.4 51 72.5
RcHm_v2.0_Chr1g0365751 Rosa chinensis HOM05D002933 ORTHO05D007742 1.2e-14 82.4 51 72.5
SEGI_36156 Sequoiadendron giganteum HOM05D002933 ORTHO05D007742 1.6e-14 82.0 50 74.0
PSO135G0212 Papaver somniferum HOM05D002933 ORTHO05D007742 2.7e-14 81.3 53 71.7
PSO384G2709 Papaver somniferum HOM05D002933 ORTHO05D007742 2.7e-14 81.3 53 71.7
A09p48210 Brassica napus HOM05D002933 ORTHO05D007742 3.9e-13 77.4 36 94.4
CBR_g72637 Chara braunii HOM05D002933 ORTHO05D007742 1.1e-12 75.9 50 66.0
AagrBONN_evm.TU.Sc2ySwM_228.2816 Anthoceros agrestis HOM05D002933 ORTHO05D007742 1.9e-12 75.1 51 64.7
SMO367G0292 Selaginella moellendorffii HOM05D002933 ORTHO05D007742 3.3e-12 74.3 48 66.7
SMO367G0293 Selaginella moellendorffii HOM05D002933 ORTHO05D007742 3.3e-12 74.3 48 66.7
Pp3c2_13270 Physcomitrium patens HOM05D002933 ORTHO05D007742 4.3e-12 73.9 50 64.0
MCO11G828 Micromonas commoda HOM05D002933 ORTHO05D007742 7.4e-12 73.2 50 56.0
Mapoly0040s0096 Marchantia polymorpha HOM05D002933 ORTHO05D007742 9.7e-12 72.8 51 60.8
PRCOL_00000618 Prasinoderma coloniale HOM05D002933 ORTHO05D007742 2.8e-11 71.2 53 64.2
Cre12.g509050 Chlamydomonas reinhardtii HOM05D002933 ORTHO05D007742 8.2e-11 69.7 50 62.0
Potri.008G050300 Populus trichocarpa HOM05D002933 ORTHO05D007742 1.4e-10 68.9 50 64.0
Oeu057202.1 Olea europaea HOM05D002933 ORTHO05D007742 5.9e-09 63.5 35 85.7
Lsat_1_v5_gn_5_23660 Lactuca sativa HOM05D002933 ORTHO05D007742 4.2e-07 57.4 44 63.6
TAR636G1208 Trochodendron aralioides HOM05D002933 ORTHO05D007742 2.7e-06 54.7 31 80.6


User provided reference genes

Program Settings