Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00102 Brassica carinata HOM05D005580 ORTHO05D006395 1.5e-113 412.9 219 100.0
A09p48340 Brassica napus HOM05D005580 ORTHO05D006395 6.8e-106 387.5 219 94.5
BraA09t40286Z Brassica rapa HOM05D005580 ORTHO05D006395 6.8e-106 387.5 219 94.5
C08p30460 Brassica napus HOM05D005580 ORTHO05D006395 5.8e-105 384.4 219 93.6
C08p30630 Brassica napus HOM05D005580 ORTHO05D006395 1.3e-104 383.3 219 93.6
BolC8t50680H Brassica oleracea HOM05D005580 ORTHO05D006395 4.9e-104 381.3 219 93.2
BcaC07g39844 Brassica carinata HOM05D005580 ORTHO05D006395 2.4e-103 379.0 219 93.2
Sp5g07050 Schrenkiella parvula HOM05D005580 ORTHO05D006395 5.1e-101 371.3 217 90.3
BraA04t16163Z Brassica rapa HOM05D005580 ORTHO05D006395 6.6e-101 370.9 221 90.5
A04p04530 Brassica napus HOM05D005580 ORTHO05D006395 1.9e-100 369.4 221 90.5
Thhalv10010708m.g Eutrema salsugineum HOM05D005580 ORTHO05D006395 1.2e-99 366.7 217 88.9
BcaC02g09755 Brassica carinata HOM05D005580 ORTHO05D006395 8.9e-98 360.5 221 88.7
C04p36960 Brassica napus HOM05D005580 ORTHO05D006395 8.9e-98 360.5 221 88.7
BolC4t25261H Brassica oleracea HOM05D005580 ORTHO05D006395 8.9e-98 360.5 221 88.7
AT3G55420 Arabidopsis thaliana HOM05D005580 ORTHO05D006395 2.2e-96 355.9 219 86.8
AL5G36570 Arabidopsis lyrata HOM05D005580 ORTHO05D006395 8.4e-96 354.0 219 86.3
Carub.0005s2214 Capsella rubella HOM05D005580 ORTHO05D006395 3.0e-93 345.5 199 87.9
BcaC07g39859 Brassica carinata HOM05D005580 ORTHO05D006395 6.6e-93 344.4 217 86.2
THA.LOC104810028 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 4.5e-81 305.1 224 74.1
Aa31LG10G10450 Aethionema arabicum HOM05D005580 ORTHO05D006395 5.1e-77 291.6 209 78.5
BcaB02g08423 Brassica carinata HOM05D005580 ORTHO05D006395 7.4e-76 287.7 182 86.8
THA.LOC104807715 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 1.3e-75 287.0 229 69.9
THA.LOC104824274 Tarenaya hassleriana HOM05D005580 ORTHO05D006395 4.0e-74 282.0 226 69.0
CARHR165440 Cardamine hirsuta HOM05D005580 ORTHO05D006395 1.3e-72 276.9 179 84.4
Cpa.g.sc1.404 Carica papaya HOM05D005580 ORTHO05D006395 2.4e-71 272.7 239 64.0
Peaxi162Scf00886g00003 Petunia axillaris HOM05D005580 ORTHO05D006395 4.2e-71 271.9 213 69.0
Prupe.2G235300 Prunus persica HOM05D005580 ORTHO05D006395 1.2e-70 270.4 234 63.2
MD07G1198300 Malus domestica HOM05D005580 ORTHO05D006395 1.6e-70 270.0 232 64.7
Manes.07G116200 Manihot esculenta HOM05D005580 ORTHO05D006395 2.1e-70 269.6 233 64.4
Oeu064380.1 Olea europaea HOM05D005580 ORTHO05D006395 2.1e-70 269.6 228 64.9
Sabra08G0040500 Salix brachista HOM05D005580 ORTHO05D006395 2.7e-70 269.2 227 64.8
Thecc.10G042400 Theobroma cacao HOM05D005580 ORTHO05D006395 3.5e-70 268.9 208 67.8
Atru.chr12.452 Acer truncatum HOM05D005580 ORTHO05D006395 4.6e-70 268.5 217 66.4
Atru.chr12.474 Acer truncatum HOM05D005580 ORTHO05D006395 4.6e-70 268.5 217 66.4
CiPaw.01G287400 Carya illinoinensis HOM05D005580 ORTHO05D006395 4.6e-70 268.5 231 65.4
MD01G1134100 Malus domestica HOM05D005580 ORTHO05D006395 4.6e-70 268.5 234 63.7
Potri.008G055800 Populus trichocarpa HOM05D005580 ORTHO05D006395 2.3e-69 266.2 228 65.4
Potri.010G203900 Populus trichocarpa HOM05D005580 ORTHO05D006395 5.1e-69 265.0 227 64.8
Sabra10G0157500 Salix brachista HOM05D005580 ORTHO05D006395 5.1e-69 265.0 232 63.8
Rhsim03G0130700 Rhododendron simsii HOM05D005580 ORTHO05D006395 8.7e-69 264.2 215 65.6
Sed0020308 Sechium edule HOM05D005580 ORTHO05D006395 1.9e-68 263.1 208 66.3
Cfa001474 Carpinus fangiana HOM05D005580 ORTHO05D006395 2.5e-68 262.7 221 64.7
Gohir.D10G228400 Gossypium hirsutum HOM05D005580 ORTHO05D006395 2.5e-68 262.7 209 65.6
Gorai.011G260800 Gossypium raimondii HOM05D005580 ORTHO05D006395 2.5e-68 262.7 209 65.6
SalBow6G2402 Salvia bowleyana HOM05D005580 ORTHO05D006395 2.5e-68 262.7 225 66.7
ClCG09G019730 Citrullus lanatus HOM05D005580 ORTHO05D006395 3.3e-68 262.3 208 65.4
MELO3C021630.2 Cucumis melo HOM05D005580 ORTHO05D006395 7.4e-68 261.2 208 65.4
Gohir.A10G218800 Gossypium hirsutum HOM05D005580 ORTHO05D006395 7.4e-68 261.2 209 65.1
Nitab4.5_0001097g0030 Nicotiana tabacum HOM05D005580 ORTHO05D006395 7.4e-68 261.2 203 68.5
Duzib106G1822 Durio zibethinus HOM05D005580 ORTHO05D006395 9.6e-68 260.8 207 66.2
FAN01G0694 Fragaria x ananassa HOM05D005580 ORTHO05D006395 9.6e-68 260.8 239 61.1
FAN01G2215 Fragaria x ananassa HOM05D005580 ORTHO05D006395 9.6e-68 260.8 239 61.1
Manes.10G030300 Manihot esculenta HOM05D005580 ORTHO05D006395 9.6e-68 260.8 214 65.0
MSTRG.8252 Avicennia marina HOM05D005580 ORTHO05D006395 1.3e-67 260.4 203 67.5
CANSAT56G2481 Cannabis sativa HOM05D005580 ORTHO05D006395 1.3e-67 260.4 212 66.0
CsaV3_5G026670 Cucumis sativus L. HOM05D005580 ORTHO05D006395 1.3e-67 260.4 209 65.1
Sed0002022 Sechium edule HOM05D005580 ORTHO05D006395 1.3e-67 260.4 208 64.4
FAN10G2347 Fragaria x ananassa HOM05D005580 ORTHO05D006395 1.6e-67 260.0 239 60.7
HanXRQChr14g0457951 Helianthus annuus HOM05D005580 ORTHO05D006395 2.1e-67 259.6 203 68.0
FvH4_7g22470 Fragaria vesca HOM05D005580 ORTHO05D006395 2.8e-67 259.2 239 60.7
FAN03G1496 Fragaria x ananassa HOM05D005580 ORTHO05D006395 2.8e-67 259.2 239 60.7
RcHm_v2.0_Chr1g0367081 Rosa chinensis HOM05D005580 ORTHO05D006395 2.8e-67 259.2 239 61.1
FAN06G0736 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.7e-67 258.8 239 60.7
FAN06G1328 Fragaria x ananassa HOM05D005580 ORTHO05D006395 3.7e-67 258.8 239 60.7
Lsat_1_v5_gn_2_119121 Lactuca sativa HOM05D005580 ORTHO05D006395 3.7e-67 258.8 234 64.1
CiPaw.02G183900 Carya illinoinensis HOM05D005580 ORTHO05D006395 4.8e-67 258.5 232 62.5
COL.COLO4_15040 Corchorus olitorius HOM05D005580 ORTHO05D006395 4.8e-67 258.5 210 65.7
Duzib128G0371 Durio zibethinus HOM05D005580 ORTHO05D006395 4.8e-67 258.5 207 64.7
Eucgr.G02934 Eucalyptus grandis HOM05D005580 ORTHO05D006395 4.8e-67 258.5 208 64.9
QL08p059794 Quercus lobata HOM05D005580 ORTHO05D006395 4.8e-67 258.5 233 60.9
CANSAT56G4483 Cannabis sativa HOM05D005580 ORTHO05D006395 6.2e-67 258.1 212 65.1
VMungo1383G1027 Vigna mungo HOM05D005580 ORTHO05D006395 6.2e-67 258.1 211 64.9
Gorai.013G022300 Gossypium raimondii HOM05D005580 ORTHO05D006395 8.1e-67 257.7 207 65.7
PGSC0003DMG400023532 Solanum tuberosum HOM05D005580 ORTHO05D006395 8.1e-67 257.7 195 69.2
Nitab4.5_0013062g0010 Nicotiana tabacum HOM05D005580 ORTHO05D006395 1.1e-66 257.3 228 63.2
Lsat_1_v5_gn_8_15580 Lactuca sativa HOM05D005580 ORTHO05D006395 1.4e-66 256.9 224 65.2
GSVIVG01016552001 Vitis vinifera HOM05D005580 ORTHO05D006395 1.4e-66 256.9 212 65.1
Gohir.A13G019300 Gossypium hirsutum HOM05D005580 ORTHO05D006395 1.8e-66 256.5 207 65.7
PGR142G3643 Punica granatum HOM05D005580 ORTHO05D006395 2.4e-66 256.1 214 64.0
Sopen05g032940 Solanum pennellii HOM05D005580 ORTHO05D006395 2.4e-66 256.1 199 68.8
Gohir.D13G019900 Gossypium hirsutum HOM05D005580 ORTHO05D006395 3.1e-66 255.8 212 64.6
Solyc05g054450.1 Solanum lycopersicum HOM05D005580 ORTHO05D006395 3.1e-66 255.8 199 68.3
TWI38G1118 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 3.1e-66 255.8 224 62.5
CSS0041204 Camellia sinensis var. sinensis HOM05D005580 ORTHO05D006395 4.0e-66 255.4 238 61.8
Phvul.008G010700 Phaseolus vulgaris HOM05D005580 ORTHO05D006395 4.0e-66 255.4 204 64.7
TAR623G0785 Trochodendron aralioides HOM05D005580 ORTHO05D006395 4.0e-66 255.4 226 60.6
Lj1g0024567 Lotus japonicus HOM05D005580 ORTHO05D006395 6.9e-66 254.6 214 63.6
MBI05_g22035_MAGBIO Magnolia biondii HOM05D005580 ORTHO05D006395 6.9e-66 254.6 209 64.6
TWI63G0967 Tripterygium wilfordii HOM05D005580 ORTHO05D006395 6.9e-66 254.6 231 61.5
ECA238G1104 Erigeron canadensis HOM05D005580 ORTHO05D006395 1.2e-65 253.8 203 65.0
HanXRQChr02g0037481 Helianthus annuus HOM05D005580 ORTHO05D006395 2.0e-65 253.1 196 67.3
DCAR_027619 Daucus carota HOM05D005580 ORTHO05D006395 2.6e-65 252.7 235 60.4
Nn2g11101 Nelumbo nucifera HOM05D005580 ORTHO05D006395 2.6e-65 252.7 230 61.3
unitig_8.g3317 Utricularia gibba HOM05D005580 ORTHO05D006395 2.6e-65 252.7 216 64.4
Glyma.18G291400 Glycine max HOM05D005580 ORTHO05D006395 4.5e-65 251.9 235 60.0
Glyma.02G091600 Glycine max HOM05D005580 ORTHO05D006395 5.8e-65 251.5 233 60.5
Medtr7g026320 Medicago truncatula HOM05D005580 ORTHO05D006395 5.8e-65 251.5 210 63.3
Lalb_Chr17g0336141 Lupinus albus HOM05D005580 ORTHO05D006395 1.7e-64 250.0 233 60.5
Nn2g13341 Nelumbo nucifera HOM05D005580 ORTHO05D006395 1.7e-64 250.0 234 60.3
Sed0012553 Sechium edule HOM05D005580 ORTHO05D006395 1.7e-64 250.0 203 65.0
vmacro07170 Vaccinium macrocarpon HOM05D005580 ORTHO05D006395 1.7e-64 250.0 232 60.8
Cc02_g07860 Coffea canephora HOM05D005580 ORTHO05D006395 2.2e-64 249.6 241 61.0
TPR.G23775 Trifolium pratense HOM05D005580 ORTHO05D006395 2.2e-64 249.6 213 62.0
TAR633G1881 Trochodendron aralioides HOM05D005580 ORTHO05D006395 4.9e-64 248.4 211 60.7
Ca_26455_v3 Cicer arietinum L. HOM05D005580 ORTHO05D006395 2.5e-63 246.1 211 62.6
DCAR_011695 Daucus carota HOM05D005580 ORTHO05D006395 1.2e-62 243.8 229 60.7
Sc10g0001550 Simmondsia chinensis HOM05D005580 ORTHO05D006395 2.1e-62 243.0 198 65.2
PSO339G4490 Papaver somniferum HOM05D005580 ORTHO05D006395 2.7e-62 242.7 220 62.3
PSO384G2205 Papaver somniferum HOM05D005580 ORTHO05D006395 6.0e-62 241.5 220 61.8
Psat3g161760 Pisum sativum HOM05D005580 ORTHO05D006395 2.3e-61 239.6 235 56.6
Lj8C84T10 Lonicera japonica HOM05D005580 ORTHO05D006395 3.0e-61 239.2 236 58.1
Os05g0459300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 5.1e-61 238.4 200 65.0
ATR0559G355 Amborella trichopoda HOM05D005580 ORTHO05D006395 1.1e-60 237.3 214 58.4
ClCG07G003270 Citrullus lanatus HOM05D005580 ORTHO05D006395 1.9e-60 236.5 226 57.5
MELO3C023848.2 Cucumis melo HOM05D005580 ORTHO05D006395 4.3e-60 235.3 211 59.7
CsaV3_5G008020 Cucumis sativus L. HOM05D005580 ORTHO05D006395 9.6e-60 234.2 214 58.9
Lalb_Chr10g0091641 Lupinus albus HOM05D005580 ORTHO05D006395 9.6e-60 234.2 222 59.9
AUR62012083 Chenopodium quinoa HOM05D005580 ORTHO05D006395 6.3e-59 231.5 195 59.5
HPP92_019446 Vanilla planifolia HOM05D005580 ORTHO05D006395 6.3e-59 231.5 228 55.7
Ah.16g102300 Amaranthus hybridus HOM05D005580 ORTHO05D006395 1.1e-58 230.7 193 60.1
SEGI_33908 Sequoiadendron giganteum HOM05D005580 ORTHO05D006395 5.9e-57 224.9 202 59.4
PSO339G6083 Papaver somniferum HOM05D005580 ORTHO05D006395 1.0e-56 224.2 229 59.4
PSO151G0057 Papaver somniferum HOM05D005580 ORTHO05D006395 3.8e-56 222.2 229 59.0
Dinv26015 Davidia involucrata HOM05D005580 ORTHO05D006395 1.2e-54 217.2 194 61.3
CDE02G1824 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 7.9e-54 214.5 197 58.9
Lj1P937T48 Lonicera japonica HOM05D005580 ORTHO05D006395 2.0e-49 199.9 149 67.8
Os12g0571300 Oryza sativa ssp. japonica HOM05D005580 ORTHO05D006395 2.6e-49 199.5 205 52.7
Dinv03047 Davidia involucrata HOM05D005580 ORTHO05D006395 4.6e-46 188.7 233 52.8
AUR62039380 Chenopodium quinoa HOM05D000020 ORTHO05D001617 6.1e-46 188.3 172 56.4
Actinidia02948 Actinidia chinensis HOM05D005580 ORTHO05D006395 3.7e-43 179.1 219 52.1
Ciclev10032947m.g Citrus clementina HOM05D005580 ORTHO05D006395 4.7e-38 162.2 126 65.9
SGA_v2.0_scaffold2G01004 Striga asiatica HOM05D005580 ORTHO05D006395 3.0e-37 159.5 127 63.8
CDE08G0377 Ceratophyllum demersum HOM05D005580 ORTHO05D006395 5.3e-34 148.7 142 61.3
Oeu048246.1 Olea europaea HOM05D005580 ORTHO05D006395 1.2e-33 147.5 102 70.6
Cc05_g01760 Coffea canephora HOM05D005580 ORTHO05D006395 4.5e-33 145.6 219 44.3
SGA_v2.0_scaffold221G42666 Striga asiatica HOM05D005580 ORTHO05D006395 4.5e-33 145.6 115 64.3
Aqoxy4G02929 Aquilegia oxysepala HOM05D005580 ORTHO05D006395 1.3e-32 144.1 128 61.7
Migut.F01495 Erythranthe guttata HOM05D005580 ORTHO05D006395 1.9e-31 140.2 108 64.8
arahy.Tifrunner.gnm1.ann1.HEV3CF Arachis hypogaea HOM05D000969 ORTHO05D011765 5.7e-12 75.5 62 59.7
SEGI_21732 Sequoiadendron giganteum HOM05D003049 ORTHO05D003531 7.5e-12 75.1 91 51.6


User provided reference genes

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