Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00078 Brassica carinata HOM05D020978 ORTHO05D001245 4.1e-25 117.1 52 100.0
BcaB02g08408 Brassica carinata HOM05D001421 ORTHO05D001245 4.4e-19 97.1 52 78.8
Sp5g06910 Schrenkiella parvula HOM05D001421 ORTHO05D001245 4.4e-19 97.1 52 78.8
Thhalv10010871m.g Eutrema salsugineum HOM05D001421 ORTHO05D001245 1.3e-18 95.5 52 78.8
BcaC02g09771 Brassica carinata HOM05D001421 ORTHO05D001245 8.2e-18 92.8 52 76.9
C04p36800 Brassica napus HOM05D001421 ORTHO05D001245 8.2e-18 92.8 52 76.9
AL5G36760 Arabidopsis lyrata HOM05D001421 ORTHO05D001245 1.6e-16 88.6 47 80.9
AT3G55570 Arabidopsis thaliana HOM05D001421 ORTHO05D001245 4.5e-16 87.0 47 78.7
Carub.0005s2231 Capsella rubella HOM05D001421 ORTHO05D001245 3.8e-15 84.0 48 72.9
A09p48570 Brassica napus HOM05D020978 ORTHO05D024466 8.0e-13 76.3 58 67.2
BraA09t40309Z Brassica rapa HOM05D020978 ORTHO05D024466 1.0e-12 75.9 52 73.1
CARHR165640 Cardamine hirsuta HOM05D001421 ORTHO05D001245 1.4e-12 75.5 39 79.5
Aa31LG10G10590 Aethionema arabicum HOM05D001421 ORTHO05D001245 5.2e-12 73.6 53 60.4
BolC8t50713H Brassica oleracea HOM05D020978 ORTHO05D024466 5.2e-12 73.6 52 71.2
BolC4t25120H Brassica oleracea HOM05D001421 ORTHO05D001245 6.8e-12 73.2 38 78.9
BraA04t16150Z Brassica rapa HOM05D001421 ORTHO05D001245 1.5e-11 72.0 41 73.2
BcaC07g39885 Brassica carinata HOM05D020978 ORTHO05D024466 7.5e-11 69.7 52 69.2
C08p30880 Brassica napus HOM05D020978 ORTHO05D024466 7.5e-11 69.7 52 69.2
THA.LOC109117095 Tarenaya hassleriana HOM05D001421 ORTHO05D001245 7.5e-11 69.7 55 56.4
CiPaw.01G291700 Carya illinoinensis HOM05D001421 ORTHO05D001245 2.4e-09 64.7 51 56.9
Haze_17122 Corylus avellana HOM05D001421 ORTHO05D001245 4.1e-09 63.9 55 52.7
FAN10G3255 Fragaria x ananassa HOM05D001421 ORTHO05D001245 4.5e-08 60.5 34 73.5
FAN10G4274 Fragaria x ananassa HOM05D001421 ORTHO05D001245 4.5e-08 60.5 34 73.5
Dinv37555 Davidia involucrata HOM05D001421 ORTHO05D001245 5.9e-08 60.1 34 67.6
FAN01G1798 Fragaria x ananassa HOM05D000816 ORTHO05D001245 5.9e-08 60.1 34 70.6
FAN01G1833 Fragaria x ananassa HOM05D001421 ORTHO05D001245 5.9e-08 60.1 34 70.6
FAN06G2212 Fragaria x ananassa HOM05D000816 ORTHO05D001245 5.9e-08 60.1 40 62.5
Prupe.2G240100 Prunus persica HOM05D001421 ORTHO05D001245 5.9e-08 60.1 34 67.6
CSS0001063 Camellia sinensis var. sinensis HOM05D001421 ORTHO05D001245 1.0e-07 59.3 34 70.6
CSS0006781 Camellia sinensis var. sinensis HOM05D001421 ORTHO05D001245 1.0e-07 59.3 34 70.6
RcHm_v2.0_Chr1g0367441 Rosa chinensis HOM05D001421 ORTHO05D001245 1.3e-07 58.9 34 67.6
RcHm_v2.0_Chr1g0368481 Rosa chinensis HOM05D001421 ORTHO05D001245 1.3e-07 58.9 34 67.6
MD07G1204000 Malus domestica HOM05D001421 ORTHO05D001245 1.7e-07 58.5 34 64.7
FvH4_7g23130 Fragaria vesca HOM05D001421 ORTHO05D001245 2.2e-07 58.2 34 67.6
FAN06G0477 Fragaria x ananassa HOM05D000816 ORTHO05D001425 2.2e-07 58.2 34 67.6
RcHm_v2.0_Chr1g0368351 Rosa chinensis HOM05D001421 ORTHO05D001245 2.2e-07 58.2 34 67.6
Cpa.g.sc19.268 Carica papaya HOM05D001421 ORTHO05D001245 2.9e-07 57.8 34 64.7
Glyma.02G250500 Glycine max HOM05D001421 ORTHO05D001245 3.8e-07 57.4 34 64.7
Hma1.2p1_0359F.1_g135430 Hydrangea macrophylla HOM05D001421 ORTHO05D001245 3.8e-07 57.4 34 64.7
Potri.001G313700 Populus trichocarpa HOM05D001421 ORTHO05D001245 5.0e-07 57.0 34 61.8
Prupe.2G240200 Prunus persica HOM05D001421 ORTHO05D001245 5.0e-07 57.0 34 64.7
Prupe.2G306900 Prunus persica HOM05D001421 ORTHO05D001245 5.0e-07 57.0 34 64.7
TAR623G1352 Trochodendron aralioides HOM05D001421 ORTHO05D001245 5.0e-07 57.0 46 54.3
COL.COLO4_25500 Corchorus olitorius HOM05D001421 ORTHO05D001245 6.5e-07 56.6 41 58.5
FvH4_7g23090 Fragaria vesca HOM05D001421 ORTHO05D001245 6.5e-07 56.6 34 67.6
FAN03G1101 Fragaria x ananassa HOM05D001421 ORTHO05D001245 6.5e-07 56.6 34 67.6
Gohir.A10G222700 Gossypium hirsutum HOM05D001421 ORTHO05D001245 6.5e-07 56.6 34 67.6
Gohir.D10G235000 Gossypium hirsutum HOM05D001421 ORTHO05D001245 6.5e-07 56.6 34 67.6
Gorai.011G268600 Gossypium raimondii HOM05D001421 ORTHO05D001245 6.5e-07 56.6 34 67.6
MBI14_g32125_MAGBIO Magnolia biondii HOM05D001421 ORTHO05D001245 6.5e-07 56.6 48 52.1
Os01g0221400 Oryza sativa ssp. japonica HOM05D001421 ORTHO05D001245 6.5e-07 56.6 34 67.6
Thecc.10G039700 Theobroma cacao HOM05D001421 ORTHO05D001245 6.5e-07 56.6 34 67.6
GSVIVG01016477001 Vitis vinifera HOM05D001421 ORTHO05D001245 6.5e-07 56.6 51 49.0
Aqoxy1G00842 Aquilegia oxysepala HOM05D001421 ORTHO05D001245 8.5e-07 56.2 46 50.0
Lalb_Chr17g0346381 Lupinus albus HOM05D001421 ORTHO05D001245 8.5e-07 56.2 34 61.8
Nn2g11236 Nelumbo nucifera HOM05D001421 ORTHO05D001245 8.5e-07 56.2 34 58.8
Sabra17G0045800 Salix brachista HOM05D001421 ORTHO05D001245 8.5e-07 56.2 34 61.8
Atru.chr12.357 Acer truncatum HOM05D001421 ORTHO05D001245 1.1e-06 55.8 34 64.7
Ca_05902_v3 Cicer arietinum L. HOM05D001421 ORTHO05D001245 1.1e-06 55.8 34 64.7
A04p04380 Brassica napus HOM05D001421 ORTHO05D001245 1.5e-06 55.5 37 62.2
vmacro13192 Vaccinium macrocarpon HOM05D001421 ORTHO05D001245 1.5e-06 55.5 34 64.7
Glyma.03G094800 Glycine max HOM05D001421 ORTHO05D001245 1.9e-06 55.1 35 60.0
Sed0001900 Sechium edule HOM05D001421 ORTHO05D001245 1.9e-06 55.1 34 64.7
ClCG11G006650 Citrullus lanatus HOM05D001421 ORTHO05D001245 2.5e-06 54.7 40 57.5
Migut.B01835 Erythranthe guttata HOM05D001421 ORTHO05D001245 2.5e-06 54.7 34 61.8
Lalb_Chr04g0251001 Lupinus albus HOM05D001421 ORTHO05D001245 2.5e-06 54.7 39 59.0
PSO782G3213 Papaver somniferum HOM05D001421 ORTHO05D001245 2.5e-06 54.7 34 61.8
SHI23083 Sapria himalayana HOM05D001421 ORTHO05D001245 2.5e-06 54.7 34 61.8
vmacro22742 Vaccinium macrocarpon HOM05D001421 ORTHO05D001245 2.5e-06 54.7 39 56.4
AUR62004453 Chenopodium quinoa HOM05D001421 ORTHO05D001245 3.2e-06 54.3 34 64.7
Ciclev10022942m.g Citrus clementina HOM05D001421 ORTHO05D001245 3.2e-06 54.3 34 61.8
Eucgr.E00837 Eucalyptus grandis HOM05D001421 ORTHO05D001245 3.2e-06 54.3 34 61.8
MD01G1076200 Malus domestica HOM05D001421 ORTHO05D001245 3.2e-06 54.3 34 64.7
vmacro22741 Vaccinium macrocarpon HOM05D001421 ORTHO05D001245 3.2e-06 54.3 34 64.7
AUR62023496 Chenopodium quinoa HOM05D001421 ORTHO05D001245 4.2e-06 53.9 34 61.8
Glyma.19G253500 Glycine max HOM05D001421 ORTHO05D001245 4.2e-06 53.9 34 64.7
Manes.07G119602 Manihot esculenta HOM05D001421 ORTHO05D001245 4.2e-06 53.9 34 61.8
TAR629G2383 Trochodendron aralioides HOM05D001421 ORTHO05D001245 4.2e-06 53.9 34 61.8
Dinv16256 Davidia involucrata HOM05D001421 ORTHO05D001245 5.5e-06 53.5 35 65.7
Glyma.16G079500 Glycine max HOM05D001421 ORTHO05D001245 5.5e-06 53.5 35 60.0
Lsat_1_v5_gn_7_2000 Lactuca sativa HOM05D001421 ORTHO05D001245 5.5e-06 53.5 34 64.7
MD01G1139600 Malus domestica HOM05D001421 ORTHO05D001245 5.5e-06 53.5 34 61.8
Phvul.008G230900 Phaseolus vulgaris HOM05D001421 ORTHO05D001245 5.5e-06 53.5 34 64.7
QL93p0100_0638 Quercus lobata HOM05D001421 ORTHO05D001245 5.5e-06 53.5 34 64.7
Nn1g01804 Nelumbo nucifera HOM05D001421 ORTHO05D001245 7.2e-06 53.1 34 61.8
Potri.002G167900 Populus trichocarpa HOM05D001421 ORTHO05D001245 7.2e-06 53.1 35 60.0
QL04p058287 Quercus lobata HOM05D001421 ORTHO05D001245 7.2e-06 53.1 34 61.8
QL10p056025 Quercus lobata HOM05D001421 ORTHO05D001245 7.2e-06 53.1 34 61.8
TPR.G36484 Trifolium pratense HOM05D001421 ORTHO05D001245 7.2e-06 53.1 34 61.8
vmacro10215 Vaccinium macrocarpon HOM05D001421 ORTHO05D001245 7.2e-06 53.1 34 61.8


User provided reference genes

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