Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
BcaB01g00059 Brassica carinata HOM05D007615 ORTHO05D009643 5.4e-93 344.4 180 100.0
C08p31140 Brassica napus HOM05D007615 ORTHO05D009643 2.1e-68 262.7 205 73.7
BolC8t50735H Brassica oleracea HOM05D007615 ORTHO05D009643 3.6e-68 261.9 205 73.7
A09p48810 Brassica napus HOM05D007615 ORTHO05D009643 6.1e-68 261.2 200 74.0
BraA09t40334Z Brassica rapa HOM05D007615 ORTHO05D009643 6.1e-68 261.2 200 74.0
Sp5g06670 Schrenkiella parvula HOM05D007615 ORTHO05D009643 7.9e-60 234.2 205 67.8
Thhalv10010736m.g Eutrema salsugineum HOM05D007615 ORTHO05D009643 1.0e-54 217.2 201 62.2
AL5G37110 Arabidopsis lyrata HOM05D007615 ORTHO05D009643 6.1e-52 208.0 196 62.2
AT3G55820 Arabidopsis thaliana HOM05D007615 ORTHO05D009643 1.0e-51 207.2 195 60.5
CARHR165930 Cardamine hirsuta HOM05D007615 ORTHO05D009643 1.7e-49 199.9 206 56.8
Aa31LG10G10810 Aethionema arabicum HOM05D007615 ORTHO05D009643 6.5e-46 188.0 199 55.8
Carub.0005s2260 Capsella rubella HOM05D007615 ORTHO05D009643 7.2e-45 184.5 199 56.8
THA.LOC104810077 Tarenaya hassleriana HOM05D007615 ORTHO05D009643 1.2e-42 177.2 204 51.0
Cpa.g.sc19.199 Carica papaya HOM05D007615 ORTHO05D009643 6.5e-30 134.8 202 45.5
Ciclev10032806m.g Citrus clementina HOM05D007615 ORTHO05D009643 3.2e-29 132.5 190 42.6
Potri.010G192300 Populus trichocarpa HOM05D007615 ORTHO05D009643 2.1e-28 129.8 202 41.6
CsaV3_6G001660 Cucumis sativus L. HOM05D007615 ORTHO05D009643 2.8e-28 129.4 201 39.8
RcHm_v2.0_Chr1g0369501 Rosa chinensis HOM05D007615 ORTHO05D009643 1.4e-27 127.1 193 41.5
Gohir.A08G018800 Gossypium hirsutum HOM05D007615 ORTHO05D009643 1.8e-27 126.7 193 40.9
Sabra10G0147900 Salix brachista HOM05D007615 ORTHO05D009643 1.8e-27 126.7 202 41.1
ClCG11G006310 Citrullus lanatus HOM05D007615 ORTHO05D009643 2.3e-27 126.3 201 38.3
PGR142G0690 Punica granatum HOM05D007615 ORTHO05D009643 2.3e-27 126.3 196 41.3
COL.COLO4_24429 Corchorus olitorius HOM05D007615 ORTHO05D009643 3.0e-27 125.9 198 39.4
RcHm_v2.0_Chr3g0468601 Rosa chinensis HOM05D007615 ORTHO05D009643 4.0e-27 125.6 177 44.1
MELO3C008283.2 Cucumis melo HOM05D007615 ORTHO05D009643 5.2e-27 125.2 201 38.3
Gorai.004G026800 Gossypium raimondii HOM05D007615 ORTHO05D009643 5.2e-27 125.2 193 39.9
Gohir.D08G029400 Gossypium hirsutum HOM05D007615 ORTHO05D009643 8.8e-27 124.4 201 38.3
Atru.chr12.235 Acer truncatum HOM05D007615 ORTHO05D009643 1.5e-26 123.6 196 41.3
CiPaw.01G296100 Carya illinoinensis HOM05D007615 ORTHO05D009643 1.5e-26 123.6 201 41.3
Prupe.2G246900 Prunus persica HOM05D007615 ORTHO05D009643 3.4e-26 122.5 200 40.5
CANSAT56G1044 Cannabis sativa HOM05D007615 ORTHO05D009643 5.7e-26 121.7 203 41.4
Eucgr.K02662 Eucalyptus grandis HOM05D007615 ORTHO05D009643 1.7e-25 120.2 193 42.0
TWI53G1973 Tripterygium wilfordii HOM05D007615 ORTHO05D009643 8.3e-25 117.9 199 39.2
MD07G1214900 Malus domestica HOM05D007615 ORTHO05D009643 1.1e-24 117.5 199 37.7
Sed0010184 Sechium edule HOM05D007615 ORTHO05D009643 1.4e-24 117.1 198 36.9
Aqoxy4G02652 Aquilegia oxysepala HOM05D007615 ORTHO05D009643 4.1e-24 115.5 195 41.0
QL08p062684 Quercus lobata HOM05D007615 ORTHO05D009643 5.4e-24 115.2 194 39.2
Thecc.09G179400 Theobroma cacao HOM05D007615 ORTHO05D009643 5.4e-24 115.2 195 37.4
FAN03G2533 Fragaria x ananassa HOM05D007615 ORTHO05D009643 9.2e-24 114.4 192 39.1
Psat2g035440 Pisum sativum HOM05D007615 ORTHO05D009643 9.2e-24 114.4 201 38.8
DCAR_012632 Daucus carota HOM05D007615 ORTHO05D009643 1.6e-23 113.6 149 45.0
Manes.07G125900 Manihot esculenta HOM05D007615 ORTHO05D009643 1.6e-23 113.6 157 40.8
PGSC0003DMG400016017 Solanum tuberosum HOM05D007615 ORTHO05D009643 1.6e-23 113.6 192 38.5
Haze_17188 Corylus avellana HOM05D007615 ORTHO05D009643 2.0e-23 113.2 188 39.4
FAN01G2468 Fragaria x ananassa HOM05D007615 ORTHO05D009643 2.0e-23 113.2 191 38.7
Sopen04g004760 Solanum pennellii HOM05D007615 ORTHO05D009643 2.0e-23 113.2 191 37.7
Rhsim09G0172300 Rhododendron simsii HOM05D007615 ORTHO05D009643 3.5e-23 112.5 193 36.3
FAN06G4073 Fragaria x ananassa HOM05D007615 ORTHO05D009643 5.9e-23 111.7 184 39.1
Phvul.008G225800 Phaseolus vulgaris HOM05D007615 ORTHO05D009643 5.9e-23 111.7 205 36.1
Ca_05936_v3 Cicer arietinum L. HOM05D007615 ORTHO05D009643 7.8e-23 111.3 203 37.4
Medtr5g081970 Medicago truncatula HOM05D007615 ORTHO05D009643 7.8e-23 111.3 196 37.2
TAR636G2052 Trochodendron aralioides HOM05D007615 ORTHO05D009643 7.8e-23 111.3 201 37.3
VMungo0647G1713 Vigna mungo HOM05D007615 ORTHO05D009643 7.8e-23 111.3 190 37.4
EL10Ac2g04791 Beta vulgaris HOM05D007615 ORTHO05D009643 1.0e-22 110.9 140 45.0
HanXRQChr07g0202461 Helianthus annuus HOM05D007615 ORTHO05D009643 1.0e-22 110.9 197 36.0
LjContig00357g0021515 Lotus japonicus HOM05D007615 ORTHO05D009643 1.0e-22 110.9 207 37.2
TAR636G3510 Trochodendron aralioides HOM05D007615 ORTHO05D009643 1.3e-22 110.5 194 37.6
vmacro10061 Vaccinium macrocarpon HOM05D007615 ORTHO05D009643 1.3e-22 110.5 202 35.1
Dinv20960 Davidia involucrata HOM05D000277 ORTHO05D000214 2.9e-22 109.4 174 39.1
Dinv20983 Davidia involucrata HOM05D000277 ORTHO05D000214 2.9e-22 109.4 174 39.1
Duzib170G1068 Durio zibethinus HOM05D007615 ORTHO05D009643 2.9e-22 109.4 138 44.2
Cfa001360 Carpinus fangiana HOM05D007615 ORTHO05D009643 3.8e-22 109.0 159 42.1
ECA238G0429 Erigeron canadensis HOM05D007615 ORTHO05D009643 5.0e-22 108.6 204 35.3
Lalb_Chr17g0346631 Lupinus albus HOM05D007615 ORTHO05D009643 8.6e-22 107.8 202 37.1
FAN10G2819 Fragaria x ananassa HOM05D007615 ORTHO05D009643 1.1e-21 107.5 192 37.5
Nn2g11402 Nelumbo nucifera HOM05D007615 ORTHO05D009643 2.5e-21 106.3 201 36.8
Psat3g208000 Pisum sativum HOM05D007615 ORTHO05D009643 2.5e-21 106.3 158 43.0
Sc11g0007250 Simmondsia chinensis HOM05D007615 ORTHO05D009643 5.6e-21 105.1 187 37.4
Glyma.14G061700 Glycine max HOM05D007615 ORTHO05D009643 7.3e-21 104.8 204 35.8
MBI14_g04425_MAGBIO Magnolia biondii HOM05D005325 ORTHO05D008457 7.3e-21 104.8 194 35.1
Dinv34419 Davidia involucrata HOM05D007615 ORTHO05D009643 1.2e-20 104.0 182 37.9
Cc02_g06860 Coffea canephora HOM05D007615 ORTHO05D009643 1.6e-20 103.6 195 38.5
Nitab4.5_0000737g0100 Nicotiana tabacum HOM05D007615 ORTHO05D009643 1.6e-20 103.6 141 41.8
Nitab4.5_0001654g0050 Nicotiana tabacum HOM05D007615 ORTHO05D009643 2.1e-20 103.2 194 34.5
CSS0034825 Camellia sinensis var. sinensis HOM05D007615 ORTHO05D009643 2.3e-19 99.8 173 37.0
Actinidia00935 Actinidia chinensis HOM05D007615 ORTHO05D009643 3.0e-19 99.4 200 35.5
TPR.G19858 Trifolium pratense HOM05D007615 ORTHO05D009643 3.0e-19 99.4 210 32.9
Migut.F01421 Erythranthe guttata HOM05D007615 ORTHO05D009643 4.0e-19 99.0 194 33.5
unitig_62.g23933 Utricularia gibba HOM05D007615 ORTHO05D009643 5.2e-19 98.6 193 34.7
PSO339G1281 Papaver somniferum HOM05D007615 ORTHO05D009643 8.9e-19 97.8 203 35.5
Hund13833 Selenicereus undatus HOM05D007615 ORTHO05D009643 8.9e-19 97.8 172 37.2
Oeu063511.1 Olea europaea HOM05D007615 ORTHO05D009643 1.2e-18 97.4 142 41.5
PSO384G4204 Papaver somniferum HOM05D007615 ORTHO05D009643 1.2e-18 97.4 200 32.5
Lsat_1_v5_gn_2_121681 Lactuca sativa HOM05D000277 ORTHO05D000214 2.0e-18 96.7 172 34.9
SGA_v2.0_scaffold456G51922 Striga asiatica HOM05D002401 ORTHO05D007109 2.0e-18 96.7 188 36.2
Ah.16g103150 Amaranthus hybridus HOM05D007615 ORTHO05D009643 2.6e-18 96.3 176 34.7
SalBow6G0125 Salvia bowleyana HOM05D007615 ORTHO05D009643 6.4e-17 91.7 189 33.9
ATR0618G365 Amborella trichopoda HOM05D005325 ORTHO05D008457 9.2e-16 87.8 133 39.8
Potri.008G065101 Populus trichocarpa HOM05D007615 ORTHO05D009643 1.2e-15 87.4 127 40.9
SGA_v2.0_scaffold304G47925 Striga asiatica HOM05D002401 ORTHO05D007109 3.5e-15 85.9 179 34.6
SEGI_38309 Sequoiadendron giganteum HOM05D007615 ORTHO05D009643 4.6e-15 85.5 151 39.1
CDE10G1314 Ceratophyllum demersum HOM05D007615 ORTHO05D009643 3.0e-14 82.8 134 34.3
Peaxi162Scf00079g00249 Petunia axillaris HOM05D007615 ORTHO05D009643 3.9e-14 82.4 122 39.3
HPP92_006631 Vanilla planifolia HOM05D007615 ORTHO05D009643 3.3e-13 79.3 143 35.7
Oeu046579.1 Olea europaea HOM05D007615 ORTHO05D009643 2.1e-12 76.6 105 43.8
Mapoly0011s0100 Marchantia polymorpha HOM05D007615 ORTHO05D009643 1.9e-08 63.5 212 30.7
SMO139G0141 Selaginella moellendorffii HOM05D007615 ORTHO05D009643 1.3e-06 57.4 140 33.6
SMO145G0032 Selaginella moellendorffii HOM05D001529 ORTHO05D007595 1.3e-06 57.4 140 33.6


User provided reference genes

Program Settings