Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.ctg114.13 Acer truncatum HOM05D006052 ORTHO05D007319 6.9e-33 143.3 67 100.0
TWI18G1030 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 3.1e-25 117.9 66 78.8
PGR102G0387 Punica granatum HOM05D006052 ORTHO05D007319 1.5e-24 115.5 66 77.3
Ciclev10026826m.g Citrus clementina HOM05D006052 ORTHO05D007319 2.0e-24 115.2 66 75.8
Gohir.A05G128200 Gossypium hirsutum HOM05D006052 ORTHO05D007319 2.6e-24 114.8 66 75.8
Gohir.D05G132700 Gossypium hirsutum HOM05D006052 ORTHO05D007319 2.6e-24 114.8 66 75.8
Gorai.009G136400 Gossypium raimondii HOM05D006052 ORTHO05D007319 2.6e-24 114.8 66 75.8
Thecc.06G096200 Theobroma cacao HOM05D006052 ORTHO05D007319 2.6e-24 114.8 66 75.8
MD17G1187600 Malus domestica HOM05D006052 ORTHO05D007319 3.4e-24 114.4 66 77.3
Eucgr.F03060 Eucalyptus grandis HOM05D006052 ORTHO05D007319 7.6e-24 113.2 66 74.2
Prupe.3G063000 Prunus persica HOM05D006052 ORTHO05D007319 7.6e-24 113.2 66 75.8
Actinidia39148 Actinidia chinensis HOM05D006052 ORTHO05D007319 1.3e-23 112.5 66 75.8
Potri.001G187200 Populus trichocarpa HOM05D006052 ORTHO05D007319 1.3e-23 112.5 66 72.7
EL10Ac9g22109 Beta vulgaris HOM05D006052 ORTHO05D007319 1.7e-23 112.1 66 72.7
MBI04_g27065_MAGBIO Magnolia biondii HOM05D006052 ORTHO05D007319 1.7e-23 112.1 66 74.2
Haze_16332 Corylus avellana HOM05D006052 ORTHO05D007319 2.2e-23 111.7 66 75.8
arahy.Tifrunner.gnm1.ann1.69I5GX Arachis hypogaea HOM05D006052 ORTHO05D007319 2.9e-23 111.3 66 72.7
arahy.Tifrunner.gnm1.ann1.NZ5FDW Arachis hypogaea HOM05D006052 ORTHO05D007319 2.9e-23 111.3 66 72.7
arahy.Tifrunner.gnm1.ann1.S0BGA2 Arachis hypogaea HOM05D006052 ORTHO05D007319 2.9e-23 111.3 66 72.7
FAN05G1983 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.9e-23 111.3 66 74.2
FAN14G5158 Fragaria x ananassa HOM05D002582 ORTHO05D002781 2.9e-23 111.3 66 74.2
HanXRQChr02g0032361 Helianthus annuus HOM05D006052 ORTHO05D007319 2.9e-23 111.3 66 74.2
Manes.04G131832 Manihot esculenta HOM05D006052 ORTHO05D007319 2.9e-23 111.3 66 71.2
Sc15g0001990 Simmondsia chinensis HOM05D006052 ORTHO05D007319 2.9e-23 111.3 66 71.2
Rhsim12G0201800 Rhododendron simsii HOM05D006052 ORTHO05D007319 3.8e-23 110.9 66 72.7
Cc04_g02780 Coffea canephora HOM05D006052 ORTHO05D007319 4.9e-23 110.5 66 74.2
Dinv37999 Davidia involucrata HOM05D006052 ORTHO05D007319 4.9e-23 110.5 66 72.7
RcHm_v2.0_Chr2g0139621 Rosa chinensis HOM05D006052 ORTHO05D007319 4.9e-23 110.5 66 72.7
Sed0023726 Sechium edule HOM05D006052 ORTHO05D007319 4.9e-23 110.5 66 72.7
TWI12G0943 Tripterygium wilfordii HOM05D006052 ORTHO05D007319 4.9e-23 110.5 66 71.2
arahy.Tifrunner.gnm1.ann1.Q44M57 Arachis hypogaea HOM05D006052 ORTHO05D007319 6.4e-23 110.2 66 72.7
FAN02G3299 Fragaria x ananassa HOM05D006052 ORTHO05D007319 6.4e-23 110.2 66 72.7
Eucgr.E01716 Eucalyptus grandis HOM05D006052 ORTHO05D007319 8.4e-23 109.8 66 72.7
Nn3g18169 Nelumbo nucifera HOM05D006052 ORTHO05D007319 8.4e-23 109.8 66 71.2
Sp5g24870 Schrenkiella parvula HOM05D006052 ORTHO05D007319 8.4e-23 109.8 66 72.7
TAR626G0898 Trochodendron aralioides HOM05D006052 ORTHO05D007319 8.4e-23 109.8 66 71.2
TAR636G2101 Trochodendron aralioides HOM05D006052 ORTHO05D007319 8.4e-23 109.8 66 71.2
Ah.01g021850 Amaranthus hybridus HOM05D007180 ORTHO05D009028 1.1e-22 109.4 63 73.0
CANSAT56G3932 Cannabis sativa HOM05D006052 ORTHO05D007319 1.1e-22 109.4 66 74.2
AUR62031876 Chenopodium quinoa HOM05D006052 ORTHO05D007319 1.1e-22 109.4 66 72.7
AL1G38650 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.4e-22 109.0 66 71.2
CSS0026597 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 1.4e-22 109.0 66 71.2
AL2G28930 Arabidopsis lyrata HOM05D006052 ORTHO05D007319 1.9e-22 108.6 66 71.2
AT1G66590 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.9e-22 108.6 66 71.2
AT1G69750 Arabidopsis thaliana HOM05D006052 ORTHO05D007319 1.9e-22 108.6 66 71.2
Thhalv10019223m.g Eutrema salsugineum HOM05D006052 ORTHO05D007319 1.9e-22 108.6 66 71.2
PSO566G0324 Papaver somniferum HOM05D006052 ORTHO05D007319 1.9e-22 108.6 66 72.7
Peaxi162Scf00038g00824 Petunia axillaris HOM05D006052 ORTHO05D007319 1.9e-22 108.6 66 72.7
Zm00001eb002070 Zea mays HOM05D006052 ORTHO05D007319 1.9e-22 108.6 66 71.2
ClCG09G001790 Citrullus lanatus HOM05D006052 ORTHO05D007319 2.4e-22 108.2 66 71.2
Migut.I00924 Erythranthe guttata HOM05D006052 ORTHO05D007319 2.4e-22 108.2 66 69.7
PGSC0003DMG402002538 Solanum tuberosum HOM05D006052 ORTHO05D007319 2.4e-22 108.2 66 72.7
Zm00001eb295530 Zea mays HOM05D006052 ORTHO05D007319 2.4e-22 108.2 66 71.2
MSTRG.22652 Avicennia marina HOM05D006052 ORTHO05D007319 3.2e-22 107.8 66 69.7
Carub.0002s1643 Capsella rubella HOM05D006052 ORTHO05D007319 3.2e-22 107.8 66 69.7
DCAR_026339 Daucus carota HOM05D006052 ORTHO05D007319 3.2e-22 107.8 66 69.7
CSS0014721 Camellia sinensis var. sinensis HOM05D006052 ORTHO05D007319 4.2e-22 107.5 66 69.7
AUR62022170 Chenopodium quinoa HOM05D006052 ORTHO05D007319 4.2e-22 107.5 66 71.2
Nitab4.5_0003039g0060 Nicotiana tabacum HOM05D006052 ORTHO05D007319 4.2e-22 107.5 66 72.7
Nitab4.5_0007758g0100 Nicotiana tabacum HOM05D006052 ORTHO05D007319 4.2e-22 107.5 66 71.2
unitig_748.g8097 Utricularia gibba HOM05D003052 ORTHO05D007319 4.2e-22 107.5 66 72.7
Dinv32171 Davidia involucrata HOM05D006052 ORTHO05D007319 5.4e-22 107.1 66 72.7
CiPaw.01G233600 Carya illinoinensis HOM05D006052 ORTHO05D007319 7.1e-22 106.7 66 71.2
VMungo1309G2952 Vigna mungo HOM05D006052 ORTHO05D007319 7.1e-22 106.7 65 70.8
CsaV3_7G033550 Cucumis sativus L. HOM05D006052 ORTHO05D007319 9.3e-22 106.3 66 69.7
HanXRQChr16g0501261 Helianthus annuus HOM05D006052 ORTHO05D007319 9.3e-22 106.3 66 71.2
BcaB03g14752 Brassica carinata HOM05D006052 ORTHO05D007319 1.2e-21 105.9 66 69.7
BcaB03g15501 Brassica carinata HOM05D006052 ORTHO05D007319 1.2e-21 105.9 66 69.7
Solyc03g120820.4 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.2e-21 105.9 66 69.7
Solyc12g044380.3 Solanum lycopersicum HOM05D006052 ORTHO05D007319 1.2e-21 105.9 66 72.7
Sopen12g022650 Solanum pennellii HOM05D006052 ORTHO05D007319 1.2e-21 105.9 66 72.7
PGSC0003DMG400026453 Solanum tuberosum HOM05D006052 ORTHO05D007319 1.2e-21 105.9 66 72.7
PSO782G5494 Papaver somniferum HOM05D006052 ORTHO05D007319 1.6e-21 105.5 66 71.2
CARHR062820 Cardamine hirsuta HOM05D006052 ORTHO05D007319 2.1e-21 105.1 63 71.4
Glyma.07G017500 Glycine max HOM05D006052 ORTHO05D007319 2.1e-21 105.1 65 69.2
Lj3g0026702 Lotus japonicus HOM05D006052 ORTHO05D007319 2.1e-21 105.1 66 69.7
QL05p020889 Quercus lobata HOM05D006052 ORTHO05D007319 2.1e-21 105.1 63 73.0
VMungo0331G0139 Vigna mungo HOM05D007180 ORTHO05D009028 2.1e-21 105.1 65 69.2
Phvul.010G146800 Phaseolus vulgaris HOM05D006052 ORTHO05D007319 2.7e-21 104.8 65 67.7
vmacro16981 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 2.7e-21 104.8 63 69.8
SalBow6G3458 Salvia bowleyana HOM05D006052 ORTHO05D007319 3.5e-21 104.4 67 65.7
GSVIVG01017036001 Vitis vinifera HOM05D006052 ORTHO05D007319 3.5e-21 104.4 66 68.2
ECA232G3158 Erigeron canadensis HOM05D006052 ORTHO05D007319 4.6e-21 104.0 66 69.7
Lalb_Chr01g0013101 Lupinus albus HOM05D006052 ORTHO05D007319 4.6e-21 104.0 65 67.7
Lalb_Chr01g0013121 Lupinus albus HOM05D006052 ORTHO05D007319 4.6e-21 104.0 65 67.7
Aa31LG7G8230 Aethionema arabicum HOM05D006052 ORTHO05D007319 6.0e-21 103.6 63 69.8
A07p36160 Brassica napus HOM05D006052 ORTHO05D007319 6.0e-21 103.6 64 70.3
C06p43560 Brassica napus HOM05D006052 ORTHO05D007319 6.0e-21 103.6 64 70.3
BolC6t39428H Brassica oleracea HOM05D006052 ORTHO05D007319 6.0e-21 103.6 64 70.3
BraA07t31192Z Brassica rapa HOM05D006052 ORTHO05D007319 6.0e-21 103.6 64 70.3
Hma1.2p1_1689F.1_g297700 Hydrangea macrophylla HOM05D006052 ORTHO05D007319 6.0e-21 103.6 64 68.8
Ca_11523_v3 Cicer arietinum L. HOM05D007180 ORTHO05D009028 7.9e-21 103.2 66 66.7
Medtr3g112340 Medicago truncatula HOM05D006052 ORTHO05D007319 7.9e-21 103.2 66 68.2
Medtr8g013760 Medicago truncatula HOM05D006052 ORTHO05D007319 7.9e-21 103.2 66 68.2
SGA_v2.0_scaffold69G23334 Striga asiatica HOM05D006052 ORTHO05D007319 7.9e-21 103.2 63 68.3
TPR.G14815 Trifolium pratense HOM05D006052 ORTHO05D007319 7.9e-21 103.2 66 66.7
Glyma.08G202700 Glycine max HOM05D006052 ORTHO05D007319 1.0e-20 102.8 65 67.7
Psat4g197560 Pisum sativum HOM05D006052 ORTHO05D007319 1.0e-20 102.8 66 68.2
QL05p021035 Quercus lobata HOM05D006052 ORTHO05D007319 1.0e-20 102.8 62 72.6
THA.LOC104800715 Tarenaya hassleriana HOM05D006052 ORTHO05D007319 1.0e-20 102.8 65 67.7
HPP92_024167 Vanilla planifolia HOM05D006052 ORTHO05D007319 1.0e-20 102.8 66 66.7
RcHm_v2.0_Chr5g0082611 Rosa chinensis HOM05D006052 ORTHO05D007319 1.8e-20 102.1 64 70.3
SEGI_14426 Sequoiadendron giganteum HOM05D006052 ORTHO05D007319 1.8e-20 102.1 66 65.2
CAN.G203.53 Capsicum annuum HOM05D006052 ORTHO05D007319 3.0e-20 101.3 63 69.8
Oeu063940.2 Olea europaea HOM05D004680 ORTHO05D007319 3.9e-20 100.9 64 67.2
CDE02G2125 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 1.5e-19 99.0 66 63.6
CDE08G0656 Ceratophyllum demersum HOM05D006052 ORTHO05D007319 1.5e-19 99.0 66 63.6
BcaC03g15114 Brassica carinata HOM05D006052 ORTHO05D007319 4.3e-19 97.4 64 64.1
BolC2t08748H Brassica oleracea HOM05D006052 ORTHO05D007319 4.3e-19 97.4 64 64.1
BraA07t30774Z Brassica rapa HOM05D006052 ORTHO05D007319 5.6e-19 97.1 65 63.1
A07p31390 Brassica napus HOM05D006052 ORTHO05D007319 7.4e-19 96.7 63 63.5
RcHm_v2.0_Chr5g0082321 Rosa chinensis HOM05D006052 ORTHO05D007319 3.6e-18 94.4 64 65.6
MD09G1206900 Malus domestica HOM05D006052 ORTHO05D007319 8.1e-18 93.2 88 53.4
Mapoly0075s0024 Marchantia polymorpha HOM05D006052 ORTHO05D007319 8.1e-18 93.2 65 60.0
RcHm_v2.0_Chr4g0404221 Rosa chinensis HOM05D006052 ORTHO05D007319 1.4e-17 92.4 63 65.1
C02p26750 Brassica napus HOM05D006052 ORTHO05D007319 2.4e-17 91.7 62 59.7
BraA02t06670Z Brassica rapa HOM05D006052 ORTHO05D007319 1.5e-16 89.0 64 60.9
A02p16100 Brassica napus HOM05D006052 ORTHO05D007319 5.8e-16 87.0 65 60.0
Nitab4.5_0008606g0020 Nicotiana tabacum HOM05D006052 ORTHO05D007319 5.8e-16 87.0 50 72.0
SMO271G0187 Selaginella moellendorffii HOM05D006052 ORTHO05D007319 9.9e-16 86.3 66 56.1
AagrBONN_evm.TU.Sc2ySwM_344.4288 Anthoceros agrestis HOM05D006052 ORTHO05D007319 1.1e-14 82.8 61 55.7
Pp3c14_6840 Physcomitrium patens HOM05D006052 ORTHO05D007319 1.4e-14 82.4 61 55.7
CBR_g27938 Chara braunii HOM05D006052 ORTHO05D007319 1.9e-14 82.0 68 52.9
Nitab4.5_0001315g0290 Nicotiana tabacum HOM05D006052 ORTHO05D007319 1.3e-12 75.9 49 63.3
Cre10.g454550 Chlamydomonas reinhardtii HOM05D006052 ORTHO05D007319 5.6e-11 70.5 61 49.2
PRCOL_00001792 Prasinoderma coloniale HOM05D006052 ORTHO05D007319 7.4e-11 70.1 59 52.5
MCO15G075 Micromonas commoda HOM05D006052 ORTHO05D007319 2.4e-09 65.1 57 52.6
MELO3C024266.2 Cucumis melo HOM05D006052 ORTHO05D007319 1.3e-07 59.3 36 63.9
TPR.G20406 Trifolium pratense HOM05D006052 ORTHO05D007319 2.9e-07 58.2 33 72.7
Cfa026674 Carpinus fangiana HOM05D006052 ORTHO05D007319 1.4e-06 55.8 68 42.6
Manes.11G036000 Manihot esculenta HOM05D006052 ORTHO05D007319 1.9e-06 55.5 34 64.7
Lsat_1_v5_gn_1_34740 Lactuca sativa HOM05D006052 ORTHO05D007319 2.5e-06 55.1 40 57.5
Nn2g12137 Nelumbo nucifera HOM05D006052 ORTHO05D007319 4.2e-06 54.3 33 63.6
Sp2g00570 Schrenkiella parvula HOM05D006052 ORTHO05D007319 5.5e-06 53.9 33 69.7
vmacro16174 Vaccinium macrocarpon HOM05D006052 ORTHO05D007319 7.1e-06 53.5 34 61.8


User provided reference genes

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