Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.985 Acer truncatum HOM05D006000 ORTHO05D007749 5.1e-301 1036.9 519 100.0
MD14G1166100 Malus domestica HOM05D006000 ORTHO05D007749 4.6e-201 704.9 502 69.7
Cfa018908 Carpinus fangiana HOM05D006000 ORTHO05D007749 4.3e-199 698.4 502 69.3
Ciclev10024180m.g Citrus clementina HOM05D006000 ORTHO05D007749 5.6e-199 698.0 505 70.5
MD06G1160100 Malus domestica HOM05D006000 ORTHO05D007749 3.4e-196 688.7 503 67.4
Prupe.5G160400 Prunus persica HOM05D006000 ORTHO05D007749 4.1e-194 681.8 502 67.3
Haze_07292 Corylus avellana HOM05D006000 ORTHO05D007749 9.2e-194 680.6 531 65.9
RcHm_v2.0_Chr7g0191691 Rosa chinensis HOM05D006000 ORTHO05D007749 3.3e-191 672.2 505 67.5
Gohir.D03G103100 Gossypium hirsutum HOM05D006000 ORTHO05D007749 7.3e-191 671.0 507 64.7
Gorai.003G108600 Gossypium raimondii HOM05D006000 ORTHO05D007749 5.2e-189 664.8 507 63.7
Gohir.A03G063200 Gossypium hirsutum HOM05D006000 ORTHO05D007749 5.8e-188 661.4 507 64.1
FAN18G3028 Fragaria x ananassa HOM05D006000 ORTHO05D007749 2.9e-187 659.1 511 65.6
GSVIVG01007577001 Vitis vinifera HOM05D006000 ORTHO05D007749 7.1e-186 654.4 507 63.9
FvH4_5g06990 Fragaria vesca HOM05D006000 ORTHO05D007749 1.2e-185 653.7 504 65.5
QL10p005632 Quercus lobata HOM05D006000 ORTHO05D007749 1.6e-185 653.3 512 64.6
FAN08G3509 Fragaria x ananassa HOM05D006000 ORTHO05D007749 5.1e-184 648.3 507 64.7
CANSAT80G1864 Cannabis sativa HOM05D006000 ORTHO05D007749 1.9e-183 646.4 507 62.3
Sabra15G0111200 Salix brachista HOM05D006000 ORTHO05D007749 1.9e-183 646.4 507 64.1
Manes.06G113400 Manihot esculenta HOM05D006000 ORTHO05D007749 2.1e-182 642.9 504 64.1
TAR622G0802 Trochodendron aralioides HOM05D006000 ORTHO05D007749 8.1e-182 641.0 505 62.6
TWI39G0152 Tripterygium wilfordii HOM05D006000 ORTHO05D007749 9.9e-180 634.0 503 62.4
CSS0006429 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 1.2e-177 627.1 513 63.0
THA.LOC104818202 Tarenaya hassleriana HOM05D006000 ORTHO05D007749 2.1e-177 626.3 504 63.7
CSS0019701 Camellia sinensis var. sinensis HOM05D006000 ORTHO05D007749 6.0e-177 624.8 513 62.8
Thhalv10010185m.g Eutrema salsugineum HOM05D006000 ORTHO05D007749 6.6e-176 621.3 506 61.9
Lj9C473G6 Lonicera japonica HOM05D006000 ORTHO05D007749 1.1e-173 614.0 510 61.6
AT3G48380 Arabidopsis thaliana HOM05D006000 ORTHO05D007749 1.8e-173 613.2 502 61.8
ClCG03G003330 Citrullus lanatus HOM05D006000 ORTHO05D007749 4.0e-173 612.1 509 59.9
BcaC07g39322 Brassica carinata HOM05D006000 ORTHO05D007749 6.9e-173 611.3 505 60.8
BcaB01g00818 Brassica carinata HOM05D006000 ORTHO05D007749 1.2e-172 610.5 509 60.9
Hund05620 Selenicereus undatus HOM05D006000 ORTHO05D007749 3.4e-172 609.0 510 58.8
CARHR157150 Cardamine hirsuta HOM05D006000 ORTHO05D007749 7.6e-172 607.8 502 61.6
AL5G27780 Arabidopsis lyrata HOM05D006000 ORTHO05D007749 9.9e-172 607.4 502 61.6
C08p23370 Brassica napus HOM05D006000 ORTHO05D007749 1.7e-171 606.7 506 60.7
BolC8t49966H Brassica oleracea HOM05D006000 ORTHO05D007749 1.7e-171 606.7 506 60.7
Dinv11120 Davidia involucrata HOM05D006000 ORTHO05D007749 8.4e-171 604.4 454 65.6
FAN04G1552 Fragaria x ananassa HOM05D006000 ORTHO05D007749 1.4e-170 603.6 507 61.9
Sp5g13670 Schrenkiella parvula HOM05D006000 ORTHO05D007749 2.4e-170 602.8 503 60.4
Nn4g22511 Nelumbo nucifera HOM05D006000 ORTHO05D007749 3.2e-170 602.4 505 59.4
Aa31LG4G16970 Aethionema arabicum HOM05D006000 ORTHO05D007749 1.6e-169 600.1 502 60.0
A06p19300 Brassica napus HOM05D006000 ORTHO05D007749 4.6e-169 598.6 505 60.2
Carub.0005s1454 Capsella rubella HOM05D006000 ORTHO05D007749 6.0e-169 598.2 502 60.4
Eucgr.B00167 Eucalyptus grandis HOM05D006000 ORTHO05D007749 2.3e-168 596.3 508 58.5
BraA06t25013Z Brassica rapa HOM05D006000 ORTHO05D007749 5.1e-168 595.1 505 60.0
Thecc.03G120400 Theobroma cacao HOM05D006000 ORTHO05D007749 6.2e-166 588.2 507 58.6
vmacro16696 Vaccinium macrocarpon HOM05D006000 ORTHO05D007749 5.3e-165 585.1 517 58.8
EL10Ac7g18048 Beta vulgaris HOM05D006000 ORTHO05D007749 5.8e-164 581.6 509 56.8
Sed0018918 Sechium edule HOM05D006000 ORTHO05D007749 3.8e-163 578.9 509 57.4
Nitab4.5_0001360g0160 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.1e-162 577.4 505 58.2
CsaV3_1G009140 Cucumis sativus L. HOM05D006000 ORTHO05D007749 2.5e-162 576.2 504 57.3
CiPaw.12G034200 Carya illinoinensis HOM05D006000 ORTHO05D007749 5.5e-162 575.1 396 71.2
Oeu053502.2 Olea europaea HOM05D006000 ORTHO05D007749 3.5e-161 572.4 515 58.3
Phvul.009G170100 Phaseolus vulgaris HOM05D006000 ORTHO05D007749 1.3e-160 570.5 511 57.1
Lsat_1_v5_gn_5_13060 Lactuca sativa HOM05D006000 ORTHO05D007749 3.0e-160 569.3 511 56.8
Potri.015G088200 Populus trichocarpa HOM05D006000 ORTHO05D007749 1.5e-159 567.0 471 63.1
MELO3C002321.2 Cucumis melo HOM05D006000 ORTHO05D007749 2.5e-159 566.2 515 56.3
Ca_16102_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 7.4e-159 564.7 510 57.8
Ca_30078_v3 Cicer arietinum L. HOM05D006000 ORTHO05D007749 7.4e-159 564.7 510 57.8
VMungo1309G2614 Vigna mungo HOM05D006000 ORTHO05D007749 2.1e-158 563.1 511 57.1
PSO782G4995 Papaver somniferum HOM05D006000 ORTHO05D007749 3.7e-158 562.4 511 54.0
Nitab4.5_0006717g0030 Nicotiana tabacum HOM05D006000 ORTHO05D007749 1.8e-157 560.1 506 57.3
PGSC0003DMG400015231 Solanum tuberosum HOM05D006000 ORTHO05D007749 1.8e-157 560.1 505 57.2
Migut.D02037 Erythranthe guttata HOM05D006000 ORTHO05D007749 2.4e-157 559.7 510 57.3
Sopen03g030780 Solanum pennellii HOM05D006000 ORTHO05D007749 2.4e-157 559.7 507 57.4
Psat5g139520 Pisum sativum HOM05D006000 ORTHO05D007749 3.1e-157 559.3 511 56.0
Solyc03g111660.3 Solanum lycopersicum HOM05D006000 ORTHO05D007749 6.9e-157 558.1 506 57.3
Medtr3g075250 Medicago truncatula HOM05D006000 ORTHO05D007749 1.2e-156 557.4 511 57.1
CAN.G472.50 Capsicum annuum HOM05D006000 ORTHO05D007749 2.6e-156 556.2 508 57.1
Glyma.04G191400 Glycine max HOM05D006000 ORTHO05D007749 5.9e-156 555.1 511 56.4
AUR62001257 Chenopodium quinoa HOM05D006000 ORTHO05D007749 1.0e-155 554.3 509 54.6
Glyma.06G174400 Glycine max HOM05D006000 ORTHO05D007749 1.0e-155 554.3 511 56.4
arahy.Tifrunner.gnm1.ann1.9XY5HM Arachis hypogaea HOM05D006000 ORTHO05D007749 2.2e-155 553.1 482 59.3
arahy.Tifrunner.gnm1.ann1.1AQ6ST Arachis hypogaea HOM05D006000 ORTHO05D007749 1.4e-154 550.4 482 59.3
Actinidia36773 Actinidia chinensis HOM05D006000 ORTHO05D007749 1.6e-153 547.0 474 58.6
HanXRQChr05g0156141 Helianthus annuus HOM05D006000 ORTHO05D007749 2.1e-153 546.6 507 56.2
Lalb_Chr11g0069771 Lupinus albus HOM05D006000 ORTHO05D007749 2.3e-152 543.1 507 56.0
Peaxi162Scf00089g00935 Petunia axillaris HOM05D006000 ORTHO05D007749 2.3e-152 543.1 506 57.1
Sc10g0010320 Simmondsia chinensis HOM05D006000 ORTHO05D007749 3.9e-152 542.3 512 53.9
ECA246G4586 Erigeron canadensis HOM05D006000 ORTHO05D007749 8.7e-152 541.2 518 55.0
PGR083G2177 Punica granatum HOM05D006000 ORTHO05D007749 8.7e-152 541.2 512 53.9
MSTRG.4336 Avicennia marina HOM05D006000 ORTHO05D007749 1.1e-151 540.8 510 55.1
Lj1g0007517 Lotus japonicus HOM05D006000 ORTHO05D007749 1.5e-151 540.4 509 55.2
Rhsim12G0171000 Rhododendron simsii HOM05D006000 ORTHO05D007749 2.8e-150 536.2 469 58.6
Cc04_g10700 Coffea canephora HOM05D006000 ORTHO05D007749 1.4e-149 533.9 512 54.5
CDE09G0792 Ceratophyllum demersum HOM05D006000 ORTHO05D007749 2.5e-143 513.1 512 52.0
HPP92_027096 Vanilla planifolia HOM05D006000 ORTHO05D007749 1.5e-135 487.3 511 47.9
Ah.15g095430 Amaranthus hybridus HOM05D006000 ORTHO05D007749 3.7e-134 482.6 509 48.7
TPR.G38611 Trifolium pratense HOM05D006000 ORTHO05D007749 9.1e-133 478.0 541 49.7
ATR0824G112 Amborella trichopoda HOM05D006000 ORTHO05D007749 1.4e-128 464.2 509 49.7
SalBow8G1380 Salvia bowleyana HOM05D006000 ORTHO05D007749 2.6e-127 459.9 539 48.8
Actinidia08849 Actinidia chinensis HOM05D006000 ORTHO05D007749 6.1e-121 438.7 514 48.6
Os12g0285500 Oryza sativa ssp. japonica HOM05D006000 ORTHO05D007749 9.8e-119 431.4 502 45.8
SGA_v2.0_scaffold7G04178 Striga asiatica HOM05D006000 ORTHO05D007749 5.4e-117 425.6 463 50.8
Cpa.g.sc4.40 Carica papaya HOM05D006000 ORTHO05D007749 7.0e-109 398.7 357 58.5
HPP92_021434 Vanilla planifolia HOM05D006000 ORTHO05D007749 2.8e-105 386.7 449 44.5
unitig_21.g20436 Utricularia gibba HOM05D006000 ORTHO05D007749 3.4e-103 379.8 479 45.9
Zm00001eb133430 Zea mays HOM05D006000 ORTHO05D007749 1.6e-100 370.9 541 40.7
DCAR_016429 Daucus carota HOM05D006000 ORTHO05D007749 6.2e-97 359.0 419 47.5
Dinv12561 Davidia involucrata HOM05D006000 ORTHO05D007749 2.2e-86 323.9 303 55.4
Mapoly0004s0201 Marchantia polymorpha HOM05D006000 ORTHO05D007749 3.5e-84 316.6 505 35.8
FvH4_5g06921 Fragaria vesca HOM05D006000 ORTHO05D007749 2.1e-76 290.8 274 56.2
Pp3c6_16550 Physcomitrium patens HOM05D006000 ORTHO05D007749 4.9e-70 269.6 494 37.4
SMO201G0062 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 1.7e-67 261.2 503 35.2
arahy.Tifrunner.gnm1.ann1.HVEI7F Arachis hypogaea HOM05D006000 ORTHO05D007749 1.3e-62 245.0 234 55.1
FvH4_5g06950 Fragaria vesca HOM05D006000 ORTHO05D007749 7.9e-60 235.7 220 55.0
CBR_g41805 Chara braunii HOM05D006000 ORTHO05D007749 2.0e-47 194.5 252 40.5
DCAR_016428 Daucus carota HOM05D006000 ORTHO05D007749 1.9e-45 188.0 113 75.2
AagrBONN_evm.TU.Sc2ySwM_362.2604 Anthoceros agrestis HOM05D006000 ORTHO05D007749 3.2e-45 187.2 504 31.7
arahy.Tifrunner.gnm1.ann1.1X7LEL Arachis hypogaea HOM05D000074 ORTHO05D007749 3.1e-40 170.6 493 30.6
Cre03.g197900 Chlamydomonas reinhardtii HOM05D006000 ORTHO05D007749 3.2e-37 160.6 204 44.6
TAR622G0554 Trochodendron aralioides HOM05D006000 ORTHO05D007749 4.8e-33 146.7 156 50.6
FvH4_5g06922 Fragaria vesca HOM05D006000 ORTHO05D007749 9.7e-26 122.5 84 66.7
SMO201G0174 Selaginella moellendorffii HOM05D006000 ORTHO05D007749 2.1e-20 104.8 83 59.0
PRCOL_00005175 Prasinoderma coloniale HOM05D006000 ORTHO05D007749 1.8e-16 91.7 56 69.6
Nitab4.5_0001094g0140 Nicotiana tabacum HOM05D006000 ORTHO05D007749 2.7e-12 77.8 65 49.2
unitig_21.g20435 Utricularia gibba HOM05D006000 ORTHO05D007749 4.0e-11 73.9 37 81.1
arahy.Tifrunner.gnm1.ann1.XFG60B Arachis hypogaea HOM05D006000 ORTHO05D007749 6.7e-11 73.2 95 48.4
arahy.Tifrunner.gnm1.ann1.L5KNWH Arachis hypogaea HOM05D006000 ORTHO05D007749 1.7e-09 68.6 96 43.8
BcaB01g00966 Brassica carinata HOM05D006000 ORTHO05D007749 5.3e-08 63.5 148 35.1
SEGI_38992 Sequoiadendron giganteum HOM05D006000 ORTHO05D007749 4.5e-07 60.5 117 27.4


User provided reference genes

Program Settings