Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.93 Acer truncatum HOM05D001982 ORTHO05D008035 4.7e-100 367.9 186 100.0
QL10p034062 Quercus lobata HOM05D001982 ORTHO05D008035 7.1e-88 327.4 181 90.1
Ciclev10018888m.g Citrus clementina HOM05D001982 ORTHO05D008035 7.9e-87 323.9 182 87.4
Cfa021434 Carpinus fangiana HOM05D001982 ORTHO05D008035 8.7e-86 320.5 181 89.0
Dinv09728 Davidia involucrata HOM05D001982 ORTHO05D008035 1.5e-85 319.7 181 87.3
Potri.015G028101 Populus trichocarpa HOM05D001982 ORTHO05D008035 1.9e-85 319.3 181 87.3
Potri.012G035900 Populus trichocarpa HOM05D001982 ORTHO05D008035 5.6e-85 317.8 181 86.7
Sabra15G0023200 Salix brachista HOM05D001982 ORTHO05D008035 5.6e-85 317.8 181 87.3
TAR629G0163 Trochodendron aralioides HOM05D001982 ORTHO05D008035 5.6e-85 317.8 181 87.3
TAR371G0897 Trochodendron aralioides HOM05D001982 ORTHO05D008035 7.4e-85 317.4 177 88.1
Nn4g26692 Nelumbo nucifera HOM05D001982 ORTHO05D008035 1.3e-84 316.6 181 86.7
Hma1.2p1_0493F.1_g164870 Hydrangea macrophylla HOM05D001982 ORTHO05D008035 1.6e-84 316.2 181 85.1
CiPaw.16G073000 Carya illinoinensis HOM05D001982 ORTHO05D008035 4.8e-84 314.7 181 86.2
Sabra12G0024600 Salix brachista HOM05D001982 ORTHO05D008035 1.8e-83 312.8 181 85.6
RcHm_v2.0_Chr7g0177091 Rosa chinensis HOM05D001982 ORTHO05D008035 2.4e-83 312.4 181 86.2
Prupe.5G243600 Prunus persica HOM05D001982 ORTHO05D008035 4.0e-83 311.6 181 86.2
Eucgr.H00644 Eucalyptus grandis HOM05D001982 ORTHO05D008035 9.0e-83 310.5 181 82.9
GSVIVG01029333001 Vitis vinifera HOM05D001982 ORTHO05D008035 1.2e-82 310.1 177 85.9
FAN08G1981 Fragaria x ananassa HOM05D001982 ORTHO05D008035 1.5e-82 309.7 181 85.1
MD06G1239700 Malus domestica HOM05D001982 ORTHO05D008035 2.6e-82 308.9 181 85.1
FvH4_5g18390 Fragaria vesca HOM05D001982 ORTHO05D008035 7.6e-82 307.4 181 85.1
FAN04G2680 Fragaria x ananassa HOM05D001982 ORTHO05D008035 7.6e-82 307.4 181 84.5
FAN18G1706 Fragaria x ananassa HOM05D001982 ORTHO05D008035 7.6e-82 307.4 181 85.1
Manes.02G218300 Manihot esculenta HOM05D001982 ORTHO05D008035 9.9e-82 307.0 181 83.4
FAN13G2897 Fragaria x ananassa HOM05D001982 ORTHO05D008035 1.3e-81 306.6 181 84.0
Hma1.2p1_0493F.1_g164880 Hydrangea macrophylla HOM05D001982 ORTHO05D008035 2.2e-81 305.8 197 78.2
PGSC0003DMG400010151 Solanum tuberosum HOM05D001982 ORTHO05D008035 3.8e-81 305.1 181 81.8
MD14G1245800 Malus domestica HOM05D001982 ORTHO05D008035 6.4e-81 304.3 181 82.9
PGR083G0482 Punica granatum HOM05D001982 ORTHO05D008035 6.4e-81 304.3 181 84.5
Solyc03g098610.3 Solanum lycopersicum HOM05D001982 ORTHO05D008035 6.4e-81 304.3 181 81.2
Sopen03g029320 Solanum pennellii HOM05D001982 ORTHO05D008035 8.4e-81 303.9 181 81.2
COL.COLO4_24905 Corchorus olitorius HOM05D001982 ORTHO05D008035 1.1e-80 303.5 178 84.3
Nitab4.5_0003040g0110 Nicotiana tabacum HOM05D001982 ORTHO05D008035 1.9e-80 302.8 181 81.8
CAN.G929.22 Capsicum annuum HOM05D001982 ORTHO05D008035 3.2e-80 302.0 181 81.2
MBI06_g32742_MAGBIO Magnolia biondii HOM05D001982 ORTHO05D008035 4.2e-80 301.6 177 83.1
THA.LOC104818545 Tarenaya hassleriana HOM05D001982 ORTHO05D008035 4.2e-80 301.6 181 80.7
PSO063G1521 Papaver somniferum HOM05D001982 ORTHO05D008035 5.5e-80 301.2 181 82.3
Peaxi162Scf00171g00246 Petunia axillaris HOM05D001982 ORTHO05D008035 1.6e-79 299.7 181 81.2
Lj9A413T50 Lonicera japonica HOM05D001982 ORTHO05D008035 2.1e-79 299.3 173 85.0
PSO782G2505 Papaver somniferum HOM05D001982 ORTHO05D008035 2.1e-79 299.3 181 81.8
Prupe.4G244800 Prunus persica HOM05D001982 ORTHO05D008035 6.0e-79 297.7 181 83.4
Gohir.D11G319900 Gossypium hirsutum HOM05D001982 ORTHO05D008035 1.3e-78 296.6 181 81.8
Gorai.007G350000 Gossypium raimondii HOM05D001982 ORTHO05D008035 1.3e-78 296.6 181 81.8
ATR0618G229 Amborella trichopoda HOM05D001982 ORTHO05D008035 2.3e-78 295.8 181 80.1
SalBow5G3030 Salvia bowleyana HOM05D001982 ORTHO05D008035 2.3e-78 295.8 181 79.6
Cc04_g08460 Coffea canephora HOM05D001982 ORTHO05D008035 3.9e-78 295.0 181 80.7
Gohir.A11G304500 Gossypium hirsutum HOM05D001982 ORTHO05D008035 3.9e-78 295.0 181 81.2
CSS0020955 Camellia sinensis var. sinensis HOM05D001982 ORTHO05D008035 5.1e-78 294.7 181 81.2
CARHR094580 Cardamine hirsuta HOM05D001982 ORTHO05D008035 5.1e-78 294.7 177 78.5
SGA_v2.0_scaffold90G27748 Striga asiatica HOM05D001982 ORTHO05D008035 5.1e-78 294.7 181 79.6
Aa31LG8G5970 Aethionema arabicum HOM05D001982 ORTHO05D008035 6.7e-78 294.3 181 77.9
AL3G32550 Arabidopsis lyrata HOM05D001982 ORTHO05D008035 6.7e-78 294.3 177 79.7
Duzib128G1857 Durio zibethinus HOM05D001982 ORTHO05D008035 6.7e-78 294.3 181 81.2
Oeu038398.1 Olea europaea HOM05D001982 ORTHO05D008035 8.7e-78 293.9 181 80.7
Thhalv10020089m.g Eutrema salsugineum HOM05D001982 ORTHO05D008035 1.1e-77 293.5 177 79.7
Migut.O00266 Erythranthe guttata HOM05D001982 ORTHO05D008035 2.5e-77 292.4 181 79.0
Nitab4.5_0000782g0080 Nicotiana tabacum HOM05D001982 ORTHO05D008035 3.3e-77 292.0 198 74.7
AT3G19180 Arabidopsis thaliana HOM05D001982 ORTHO05D008035 5.6e-77 291.2 177 79.1
Ca_11834_v3 Cicer arietinum L. HOM05D001982 ORTHO05D008035 5.6e-77 291.2 177 81.9
Medtr6g077830 Medicago truncatula HOM05D001982 ORTHO05D008035 7.4e-77 290.8 177 81.4
Sp3g17250 Schrenkiella parvula HOM05D001982 ORTHO05D008035 7.4e-77 290.8 177 79.1
Thecc.05G197300 Theobroma cacao HOM05D001982 ORTHO05D008035 9.6e-77 290.4 181 78.5
arahy.Tifrunner.gnm1.ann1.60FNUJ Arachis hypogaea HOM05D001982 ORTHO05D008035 1.6e-76 289.7 181 81.8
arahy.Tifrunner.gnm1.ann1.RQR8UB Arachis hypogaea HOM05D001982 ORTHO05D008035 1.6e-76 289.7 181 81.8
BraA05t21885Z Brassica rapa HOM05D001982 ORTHO05D008035 2.8e-76 288.9 177 78.5
TWI15G0476 Tripterygium wilfordii HOM05D001982 ORTHO05D008035 2.8e-76 288.9 181 79.6
C05p46060 Brassica napus HOM05D001982 ORTHO05D008035 3.7e-76 288.5 177 78.5
BolC5t33333H Brassica oleracea HOM05D001982 ORTHO05D008035 3.7e-76 288.5 177 78.5
BcaB06g25974 Brassica carinata HOM05D001982 ORTHO05D008035 6.2e-76 287.7 177 78.5
A05p30460 Brassica napus HOM05D001982 ORTHO05D008035 6.2e-76 287.7 177 78.0
Carub.0003s1900 Capsella rubella HOM05D001982 ORTHO05D008035 6.2e-76 287.7 177 77.4
Glyma.16G213100 Glycine max HOM05D001982 ORTHO05D008035 1.1e-75 287.0 177 80.2
Glyma.09G164700 Glycine max HOM05D001982 ORTHO05D008035 3.1e-75 285.4 177 80.2
ClCG08G001990 Citrullus lanatus HOM05D001982 ORTHO05D008035 5.3e-75 284.6 185 77.8
CANSAT64G0368 Cannabis sativa HOM05D001982 ORTHO05D008035 6.9e-75 284.3 181 77.9
Lalb_Chr24g0398561 Lupinus albus HOM05D001982 ORTHO05D008035 9.0e-75 283.9 181 78.5
TPR.G19890 Trifolium pratense HOM05D001982 ORTHO05D008035 2.0e-74 282.7 177 80.2
Sc04g0004660 Simmondsia chinensis HOM05D001982 ORTHO05D008035 3.4e-74 282.0 177 78.0
CSS0047515 Camellia sinensis var. sinensis HOM05D001982 ORTHO05D008035 4.5e-74 281.6 178 79.2
Phvul.004G139200 Phaseolus vulgaris HOM05D001982 ORTHO05D008035 4.5e-74 281.6 177 78.5
Psat1g121960 Pisum sativum HOM05D001982 ORTHO05D008035 4.5e-74 281.6 177 78.5
Aqoxy3G04303 Aquilegia oxysepala HOM05D001982 ORTHO05D008035 5.8e-74 281.2 181 77.3
Hund09878 Selenicereus undatus HOM05D001982 ORTHO05D008035 7.6e-74 280.8 174 78.7
Lalb_Chr14g0370231 Lupinus albus HOM05D001982 ORTHO05D008035 1.3e-73 280.0 181 77.9
Sed0006637 Sechium edule HOM05D001982 ORTHO05D008035 1.3e-73 280.0 185 76.2
Lj2g0027511 Lotus japonicus HOM05D001982 ORTHO05D008035 2.2e-73 279.3 177 79.1
EL10Ac5g11111 Beta vulgaris HOM05D001982 ORTHO05D008035 2.9e-73 278.9 181 75.7
Lalb_Chr22g0353981 Lupinus albus HOM05D001982 ORTHO05D008035 3.8e-73 278.5 181 78.5
Ah.11g047950 Amaranthus hybridus HOM05D001982 ORTHO05D008035 2.5e-72 275.8 181 75.1
AUR62021583 Chenopodium quinoa HOM05D001982 ORTHO05D008035 3.2e-72 275.4 181 74.6
MELO3C025039.2 Cucumis melo HOM05D001982 ORTHO05D008035 5.5e-72 274.6 185 75.7
DCAR_023244 Daucus carota HOM05D001982 ORTHO05D008035 5.5e-72 274.6 181 74.6
VMungo0464G1225 Vigna mungo HOM05D001982 ORTHO05D008035 5.5e-72 274.6 177 77.4
CDE04G2352 Ceratophyllum demersum HOM05D001982 ORTHO05D008035 3.5e-71 271.9 182 73.6
ECA232G1526 Erigeron canadensis HOM05D001982 ORTHO05D008035 3.5e-71 271.9 181 74.6
CsaV3_6G002460 Cucumis sativus L. HOM05D001982 ORTHO05D008035 4.6e-71 271.6 185 74.6
AUR62008507 Chenopodium quinoa HOM05D001982 ORTHO05D008035 7.9e-71 270.8 181 72.9
Zm00001eb066330 Zea mays HOM05D001982 ORTHO05D008035 1.0e-70 270.4 181 73.5
Lsat_1_v5_gn_0_10501 Lactuca sativa HOM05D001982 ORTHO05D008035 3.9e-70 268.5 181 75.1
vmacro17745 Vaccinium macrocarpon HOM05D001982 ORTHO05D008035 1.5e-69 266.5 181 75.1
unitig_26.g10113 Utricularia gibba HOM05D001982 ORTHO05D008035 2.2e-68 262.7 177 72.3
MSTRG.23211 Avicennia marina HOM05D001982 ORTHO05D008035 2.4e-67 259.2 181 69.6
Os04g0675800 Oryza sativa ssp. japonica HOM05D001982 ORTHO05D008035 4.1e-67 258.5 172 73.8
Rhsim08G0124900 Rhododendron simsii HOM05D001982 ORTHO05D008035 5.3e-67 258.1 206 66.0
HanXRQChr16g0503331 Helianthus annuus HOM05D001982 ORTHO05D008035 5.0e-65 251.5 181 70.2
Hund02599 Selenicereus undatus HOM05D001982 ORTHO05D008035 1.1e-64 250.4 196 66.3
HPP92_022060 Vanilla planifolia HOM05D001982 ORTHO05D008035 1.1e-64 250.4 181 65.7
Haze_18329 Corylus avellana HOM05D001982 ORTHO05D008035 3.2e-64 248.8 135 89.6
SEGI_09403 Sequoiadendron giganteum HOM05D001982 ORTHO05D008035 2.6e-58 229.2 181 64.6
SEGI_16116 Sequoiadendron giganteum HOM05D001982 ORTHO05D008035 2.6e-58 229.2 181 64.6
Potri.012G036100 Populus trichocarpa HOM05D001982 ORTHO05D008035 3.7e-52 208.8 124 86.3
Sc04g0004520 Simmondsia chinensis HOM05D001982 ORTHO05D008035 4.5e-42 175.3 139 68.3
Rhsim07G0183600 Rhododendron simsii HOM05D001982 ORTHO05D001539 9.5e-16 87.8 80 65.0
Prupe.2G020600 Prunus persica HOM05D000001 ORTHO05D000003 3.2e-11 72.8 53 71.7
MD02G1305500 Malus domestica HOM05D000001 ORTHO05D000003 7.0e-11 71.6 53 71.7
FvH4_7g01510 Fragaria vesca HOM05D000001 ORTHO05D000003 7.8e-10 68.2 68 55.9
PRCOL_00002524 Prasinoderma coloniale HOM05D005397 ORTHO05D006493 1.0e-09 67.8 183 31.1
FAN01G2244 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.3e-09 67.4 68 57.4
FAN03G3402 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.7e-09 67.0 64 59.4
FAN06G2341 Fragaria x ananassa HOM05D000001 ORTHO05D000003 1.7e-09 67.0 68 55.9
FAN10G2721 Fragaria x ananassa HOM05D000001 ORTHO05D000003 3.9e-09 65.9 68 55.9
RcHm_v2.0_Chr1g0317361 Rosa chinensis HOM05D000001 ORTHO05D000003 1.5e-08 63.9 53 64.2
Pp3c22_12970 Physcomitrium patens HOM05D005397 ORTHO05D006493 2.1e-07 60.1 136 33.1
TAR625G0278 Trochodendron aralioides HOM05D005397 ORTHO05D006493 2.1e-07 60.1 161 32.9
Eucgr.F01622 Eucalyptus grandis HOM05D005397 ORTHO05D006493 2.8e-07 59.7 163 33.7
Mapoly0064s0104 Marchantia polymorpha HOM05D005397 ORTHO05D006493 4.7e-07 58.9 180 28.3
vmacro04326 Vaccinium macrocarpon HOM05D005397 ORTHO05D006493 6.2e-07 58.5 165 32.1
ClCG08G014500 Citrullus lanatus HOM05D005397 ORTHO05D006493 1.1e-06 57.8 163 31.9
Sed0023445 Sechium edule HOM05D005397 ORTHO05D006493 1.4e-06 57.4 186 30.1
CANSAT78G0864 Cannabis sativa HOM05D005397 ORTHO05D006493 1.8e-06 57.0 162 32.1
Rhsim07G0244600 Rhododendron simsii HOM05D005397 ORTHO05D006493 2.3e-06 56.6 162 32.1
Aqoxy6G02360 Aquilegia oxysepala HOM05D005397 ORTHO05D006493 3.1e-06 56.2 165 31.5
MELO3C010989.2 Cucumis melo HOM05D005397 ORTHO05D006493 3.1e-06 56.2 163 31.3
Nn5g29235 Nelumbo nucifera HOM05D005397 ORTHO05D006493 3.1e-06 56.2 159 32.7
Os02g0122400 Oryza sativa ssp. japonica HOM05D005397 ORTHO05D006493 5.2e-06 55.5 161 28.6
PSO675G6273 Papaver somniferum HOM05D005397 ORTHO05D006493 5.2e-06 55.5 104 38.5
SalBow7G0110 Salvia bowleyana HOM05D005397 ORTHO05D006493 6.8e-06 55.1 162 30.9
FAN15G0228 Fragaria x ananassa HOM05D005397 ORTHO05D006493 8.9e-06 54.7 164 32.3
PSO541G6090 Papaver somniferum HOM05D005397 ORTHO05D006493 8.9e-06 54.7 104 37.5


User provided reference genes

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