Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.366 Acer truncatum HOM05D005606 ORTHO05D006446 1.9e-306 1055.0 538 100.0
Ciclev10023713m.g Citrus clementina HOM05D005606 ORTHO05D006446 2.0e-207 726.1 534 71.9
Dinv09771 Davidia involucrata HOM05D005606 ORTHO05D006446 1.6e-193 679.9 547 66.9
TWI81G0505 Tripterygium wilfordii HOM05D005606 ORTHO05D006446 1.6e-180 636.7 544 63.1
CiPaw.09G118900 Carya illinoinensis HOM05D005606 ORTHO05D006446 2.1e-180 636.3 564 63.5
Manes.03G090364 Manihot esculenta HOM05D005606 ORTHO05D006446 2.7e-180 636.0 543 64.5
Potri.001G013300 Populus trichocarpa HOM05D005606 ORTHO05D006446 1.3e-179 633.6 540 64.8
Sabra01G0009700 Salix brachista HOM05D005606 ORTHO05D006446 1.3e-177 627.1 554 63.0
QL05p054675 Quercus lobata HOM05D005606 ORTHO05D006446 4.8e-177 625.2 687 54.6
Lj5A166G73 Lonicera japonica HOM05D005606 ORTHO05D006446 6.2e-177 624.8 553 60.8
Cfa000886 Carpinus fangiana HOM05D005606 ORTHO05D006446 3.1e-176 622.5 558 64.2
Rhsim08G0124400 Rhododendron simsii HOM05D005606 ORTHO05D006446 3.1e-176 622.5 553 60.4
MD05G1278400 Malus domestica HOM05D005606 ORTHO05D006446 4.0e-176 622.1 549 63.4
Cpa.g.sc111.40 Carica papaya HOM05D005606 ORTHO05D006446 9.0e-176 620.9 539 62.3
Eucgr.K02306 Eucalyptus grandis HOM05D005606 ORTHO05D006446 3.4e-175 619.0 547 62.9
Manes.15G103000 Manihot esculenta HOM05D005606 ORTHO05D006446 4.5e-175 618.6 545 63.1
CANSAT35G0050 Cannabis sativa HOM05D005606 ORTHO05D006446 3.8e-174 615.5 544 61.4
Prupe.4G086400 Prunus persica HOM05D005606 ORTHO05D006446 1.4e-173 613.6 546 64.1
Cc04_g08790 Coffea canephora HOM05D005606 ORTHO05D006446 7.9e-172 607.8 552 60.1
GSVIVG01012914001 Vitis vinifera HOM05D005606 ORTHO05D006446 1.3e-171 607.1 548 61.1
CSS0018749 Camellia sinensis var. sinensis HOM05D005606 ORTHO05D006446 3.3e-170 602.4 549 61.9
Lalb_Chr20g0117701 Lupinus albus HOM05D005606 ORTHO05D006446 4.8e-169 598.6 550 60.9
ClCG01G024960 Citrullus lanatus HOM05D005606 ORTHO05D006446 4.0e-168 595.5 553 60.0
arahy.Tifrunner.gnm1.ann1.XD6SW7 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.5e-167 593.6 546 61.5
Nn4g24861 Nelumbo nucifera HOM05D005606 ORTHO05D006446 4.5e-167 592.0 553 60.2
RcHm_v2.0_Chr5g0015011 Rosa chinensis HOM05D005606 ORTHO05D006446 1.3e-166 590.5 544 61.9
Sed0002755 Sechium edule HOM05D005606 ORTHO05D006446 2.2e-166 589.7 552 59.6
Thecc.03G071900 Theobroma cacao HOM05D005606 ORTHO05D006446 8.4e-166 587.8 537 61.1
CsaV3_6G052120 Cucumis sativus L. HOM05D005606 ORTHO05D006446 1.1e-165 587.4 553 59.1
PGR044G1587 Punica granatum HOM05D005606 ORTHO05D006446 2.5e-165 586.3 547 60.7
MD10G1257000 Malus domestica HOM05D005606 ORTHO05D006446 4.6e-164 582.0 553 60.0
FAN16G3646 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.3e-163 579.7 540 60.7
FAN25G1117 Fragaria x ananassa HOM05D005606 ORTHO05D006446 2.3e-163 579.7 540 60.7
FvH4_3g04970 Fragaria vesca HOM05D005606 ORTHO05D006446 3.0e-163 579.3 548 59.9
PGSC0003DMG400025630 Solanum tuberosum HOM05D005606 ORTHO05D006446 3.0e-163 579.3 551 59.5
FAN11G2201 Fragaria x ananassa HOM05D005606 ORTHO05D006446 5.1e-163 578.6 548 59.9
FAN21G0753 Fragaria x ananassa HOM05D005606 ORTHO05D006446 5.1e-163 578.6 544 60.5
Sed0004896 Sechium edule HOM05D005606 ORTHO05D006446 1.1e-162 577.4 551 58.4
Sopen03g029090 Solanum pennellii HOM05D005606 ORTHO05D006446 4.3e-162 575.5 551 59.3
Solyc03g098340.4 Solanum lycopersicum HOM05D005606 ORTHO05D006446 5.7e-162 575.1 551 59.2
SalBow5G2126 Salvia bowleyana HOM05D005606 ORTHO05D006446 7.4e-162 574.7 552 58.7
PSO782G3878 Papaver somniferum HOM05D005606 ORTHO05D006446 1.4e-160 570.5 547 58.7
Actinidia37370 Actinidia chinensis HOM05D005606 ORTHO05D006446 1.8e-160 570.1 513 61.6
arahy.Tifrunner.gnm1.ann1.KIB2TD Arachis hypogaea HOM05D000001 ORTHO05D006446 6.9e-160 568.2 529 61.2
PSO063G0483 Papaver somniferum HOM05D005606 ORTHO05D006446 1.2e-159 567.4 547 58.5
Lj6g0007906 Lotus japonicus HOM05D005606 ORTHO05D006446 1.3e-158 563.9 533 60.2
Aqoxy3G04204 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 2.2e-158 563.1 554 58.3
Gohir.A08G038700 Gossypium hirsutum HOM05D005606 ORTHO05D006446 5.0e-158 562.0 536 59.7
Gorai.004G048400 Gossypium raimondii HOM05D005606 ORTHO05D006446 1.1e-157 560.8 536 59.7
Duzib211G0450 Durio zibethinus HOM05D005606 ORTHO05D006446 1.2e-156 557.4 536 59.1
arahy.Tifrunner.gnm1.ann1.J0D3J2 Arachis hypogaea HOM05D005606 ORTHO05D006446 1.6e-156 557.0 523 61.2
Gohir.D08G048900 Gossypium hirsutum HOM05D005606 ORTHO05D006446 4.6e-156 555.4 536 59.3
SGA_v2.0_scaffold90G27762 Striga asiatica HOM05D005606 ORTHO05D006446 6.1e-156 555.1 552 56.3
arahy.Tifrunner.gnm1.ann1.P0FE7Q Arachis hypogaea HOM05D005606 ORTHO05D006446 2.3e-155 553.1 466 64.8
Oeu023545.1 Olea europaea HOM05D005606 ORTHO05D006446 1.1e-154 550.8 548 57.3
MSTRG.11550 Avicennia marina HOM05D005606 ORTHO05D006446 1.5e-154 550.4 551 56.4
Thhalv10018404m.g Eutrema salsugineum HOM05D005606 ORTHO05D006446 3.3e-154 549.3 533 57.0
MELO3C007099.2 Cucumis melo HOM05D005606 ORTHO05D006446 4.3e-154 548.9 578 54.8
Glyma.15G091800 Glycine max HOM05D005606 ORTHO05D006446 1.4e-152 543.9 536 58.6
THA.LOC104810627 Tarenaya hassleriana HOM05D005606 ORTHO05D006446 3.1e-152 542.7 538 57.1
Sp5g28210 Schrenkiella parvula HOM05D005606 ORTHO05D006446 4.1e-152 542.3 533 56.3
CAN.G1631.5 Capsicum annuum HOM05D005606 ORTHO05D006446 2.9e-150 536.2 444 64.6
Hund06728 Selenicereus undatus HOM05D005606 ORTHO05D006446 1.4e-149 533.9 545 56.0
DCAR_010217 Daucus carota HOM05D005606 ORTHO05D006446 7.2e-149 531.6 546 55.5
Oeu038484.2 Olea europaea HOM05D005606 ORTHO05D006446 9.4e-149 531.2 584 52.4
AL2G33010 Arabidopsis lyrata HOM05D005606 ORTHO05D006446 1.6e-148 530.4 533 55.3
AT1G73240 Arabidopsis thaliana HOM05D005606 ORTHO05D006446 7.9e-148 528.1 533 55.0
CARHR066250 Cardamine hirsuta HOM05D005606 ORTHO05D006446 5.1e-147 525.4 533 55.0
Glyma.13G220600 Glycine max HOM05D005606 ORTHO05D006446 1.5e-146 523.9 537 57.0
Ca_00517_v3 Cicer arietinum L. HOM05D005606 ORTHO05D006446 4.4e-146 522.3 539 54.7
Lsat_1_v5_gn_8_221 Lactuca sativa HOM05D005606 ORTHO05D006446 8.2e-145 518.1 552 55.1
BcaB03g15036 Brassica carinata HOM05D005606 ORTHO05D006446 1.1e-144 517.7 533 54.0
Medtr2g018830 Medicago truncatula HOM05D005606 ORTHO05D006446 1.4e-144 517.3 537 54.7
BcaC08g46742 Brassica carinata HOM05D005606 ORTHO05D006446 2.4e-144 516.5 534 55.1
Migut.O00253 Erythranthe guttata HOM05D005606 ORTHO05D006446 4.1e-144 515.8 552 53.4
C06p47380 Brassica napus HOM05D005606 ORTHO05D006446 7.0e-144 515.0 534 55.1
BolC6t39777H Brassica oleracea HOM05D005606 ORTHO05D006446 7.0e-144 515.0 534 55.1
Carub.0002s2004 Capsella rubella HOM05D005606 ORTHO05D006446 5.9e-143 511.9 533 53.7
BraA07t31468Z Brassica rapa HOM05D005606 ORTHO05D006446 1.0e-142 511.1 533 54.2
A07p39190 Brassica napus HOM05D005606 ORTHO05D006446 1.7e-142 510.4 533 54.2
EL10Ac8g19487 Beta vulgaris HOM05D005606 ORTHO05D006446 5.5e-141 505.4 545 51.7
Aa31LG4G3530 Aethionema arabicum HOM05D005606 ORTHO05D006446 1.2e-140 504.2 533 53.7
Sc04g0004710 Simmondsia chinensis HOM05D005606 ORTHO05D006446 1.6e-140 503.8 537 53.4
Nitab4.5_0004612g0090 Nicotiana tabacum HOM05D005606 ORTHO05D006446 5.7e-138 495.4 549 54.6
Phvul.006G167500 Phaseolus vulgaris HOM05D005606 ORTHO05D006446 1.3e-137 494.2 394 64.7
AUR62041591 Chenopodium quinoa HOM05D005606 ORTHO05D006446 5.5e-133 478.8 480 55.0
Peaxi162Scf00171g00427 Petunia axillaris HOM05D005606 ORTHO05D006446 5.5e-133 478.8 554 51.3
VMungo0540G1265 Vigna mungo HOM05D005606 ORTHO05D006446 7.2e-133 478.4 513 55.2
HanXRQChr05g0141141 Helianthus annuus HOM05D005606 ORTHO05D006446 7.5e-130 468.4 544 50.7
CDE04G0503 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 2.4e-128 463.4 489 53.0
Psat1g191760 Pisum sativum HOM05D005606 ORTHO05D006446 8.0e-124 448.4 356 63.8
CDE02G0130 Ceratophyllum demersum HOM05D005606 ORTHO05D006446 7.0e-120 435.3 466 53.0
Ah.14g085920 Amaranthus hybridus HOM05D005606 ORTHO05D001302 4.5e-119 432.6 479 52.0
Medtr8g007580 Medicago truncatula HOM05D005606 ORTHO05D006446 7.2e-117 425.2 532 50.4
SEGI_11499 Sequoiadendron giganteum HOM05D005606 ORTHO05D006446 2.1e-116 423.7 552 44.7
TAR629G2351 Trochodendron aralioides HOM05D005606 ORTHO05D006446 1.2e-114 417.9 392 62.0
Medtr8g008810 Medicago truncatula HOM05D005606 ORTHO05D006446 1.4e-107 394.4 315 65.7
Nitab4.5_0001180g0240 Nicotiana tabacum HOM05D005606 ORTHO05D006446 7.8e-103 378.6 558 45.0
vmacro17739 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 2.3e-94 350.5 381 53.3
Potri.003G213050 Populus trichocarpa HOM05D005606 ORTHO05D006446 4.7e-92 342.8 281 65.1
Zm00001eb250810 Zea mays HOM05D005606 ORTHO05D006446 7.1e-88 328.9 425 43.8
AagrBONN_evm.TU.Sc2ySwM_228.2052 Anthoceros agrestis HOM05D005606 ORTHO05D006446 1.2e-84 318.2 517 39.1
MBI06_g43804_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 4.7e-84 316.2 381 51.2
Mapoly0061s0120 Marchantia polymorpha HOM05D005606 ORTHO05D006446 4.2e-80 303.1 568 37.5
Pp3c23_16320 Physcomitrium patens HOM05D005606 ORTHO05D006446 1.7e-78 297.7 518 39.2
ATR0824G067 Amborella trichopoda HOM05D005606 ORTHO05D006446 8.7e-78 295.4 389 45.0
SMO358G0536 Selaginella moellendorffii HOM05D005606 ORTHO05D006446 5.3e-75 286.2 447 41.4
AUR62042457 Chenopodium quinoa HOM05D005606 ORTHO05D006446 9.9e-74 282.0 320 51.2
Zm00001eb187400 Zea mays HOM05D005606 ORTHO05D006446 6.0e-71 272.7 397 39.5
MBI06_g39886_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 7.9e-71 272.3 280 52.9
TPR.G7652 Trifolium pratense HOM05D005606 ORTHO05D006446 3.0e-70 270.4 217 62.2
Lj9C350G3 Lonicera japonica HOM05D005606 ORTHO05D006446 9.0e-67 258.8 278 52.9
Os02g0684300 Oryza sativa ssp. japonica HOM05D005606 ORTHO05D006446 2.9e-65 253.8 264 50.0
Hma1.2p1_0403F.1_g145180 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 1.2e-63 248.4 166 73.5
MBI06_g21907_MAGBIO Magnolia biondii HOM05D005606 ORTHO05D006446 3.7e-60 236.9 267 52.4
Hma1.2p1_0403F.1_g145190 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 2.6e-58 230.7 163 71.8
CBR_g11193 Chara braunii HOM05D005606 ORTHO05D006446 3.2e-56 223.8 413 36.6
Haze_05701 Corylus avellana HOM05D005606 ORTHO05D006446 1.8e-54 218.0 274 51.8
unitig_750.g28452 Utricularia gibba HOM05D005606 ORTHO05D006446 6.3e-52 209.5 344 41.0
ATR0879G001 Amborella trichopoda HOM05D005606 ORTHO05D006446 9.0e-51 205.7 196 55.1
unitig_750.g28451 Utricularia gibba HOM05D006848 ORTHO05D008445 4.5e-50 203.4 158 64.6
ATR0824G212 Amborella trichopoda HOM05D005606 ORTHO05D006446 4.5e-42 176.8 162 59.3
vmacro17738 Vaccinium macrocarpon HOM05D005606 ORTHO05D006446 8.5e-41 172.6 161 59.0
ECA233G5513 Erigeron canadensis HOM05D005606 ORTHO05D006446 1.9e-40 171.4 207 49.3
TPR.G20455 Trifolium pratense HOM05D005606 ORTHO05D006446 2.7e-39 167.5 122 69.7
Medtr8g008813 Medicago truncatula HOM05D005606 ORTHO05D006446 6.3e-36 156.4 139 61.9
Aqoxy3G04211 Aquilegia oxysepala HOM05D005606 ORTHO05D006446 1.7e-33 148.3 233 47.6
Hma1.2p1_0403F.1_g145170 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 2.5e-24 117.9 191 40.3
Hma1.2p1_2967F.1_g331010 Hydrangea macrophylla HOM05D005606 ORTHO05D006446 5.5e-24 116.7 191 40.3
Medtr0199s0020 Medicago truncatula HOM05D005606 ORTHO05D006446 2.6e-21 107.8 94 62.8
Sabra03G0155900 Salix brachista HOM05D005606 ORTHO05D006446 8.0e-15 86.3 93 54.8
Sabra03G0159100 Salix brachista HOM05D005606 ORTHO05D006446 8.0e-15 86.3 93 54.8
TPR.G26262 Trifolium pratense HOM05D005606 ORTHO05D006446 4.0e-14 84.0 173 38.7
Ah.15g099030 Amaranthus hybridus HOM05D002838 ORTHO05D002114 2.6e-13 81.3 97 48.5
Oeu061196.1 Olea europaea HOM05D005606 ORTHO05D006446 2.0e-10 71.6 96 46.9
BcaC01g04920 Brassica carinata HOM05D005606 ORTHO05D006446 1.0e-09 69.3 145 42.1
Actinidia09048 Actinidia chinensis HOM05D005606 ORTHO05D006446 2.7e-07 61.2 81 44.4


User provided reference genes

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