Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.27 Acer truncatum HOM05D005752 ORTHO05D006959 1.6e-98 362.8 194 100.0
Ciclev10024397m.g Citrus clementina HOM05D005752 ORTHO05D006959 5.3e-78 294.7 221 75.6
Duzib205G1872 Durio zibethinus HOM05D005752 ORTHO05D006959 1.6e-77 293.1 195 81.5
CANSAT80G0630 Cannabis sativa HOM05D005752 ORTHO05D006959 5.9e-77 291.2 197 80.2
CiPaw.15G108100 Carya illinoinensis HOM05D005752 ORTHO05D006959 1.0e-76 290.4 213 76.1
Sed0024837 Sechium edule HOM05D005752 ORTHO05D006959 2.9e-76 288.9 193 82.4
TAR472G0004 Trochodendron aralioides HOM05D005752 ORTHO05D006959 1.1e-75 287.0 202 78.2
Gohir.A07G062900 Gossypium hirsutum HOM05D005752 ORTHO05D006959 1.2e-74 283.5 201 78.1
Eucgr.H00664 Eucalyptus grandis HOM05D005752 ORTHO05D006959 1.6e-74 283.1 198 77.8
PGR083G1308 Punica granatum HOM05D005752 ORTHO05D006959 2.1e-74 282.7 205 76.1
Aqoxy3G04339 Aquilegia oxysepala HOM05D005752 ORTHO05D006959 3.6e-74 282.0 202 74.8
TAR636G2449 Trochodendron aralioides HOM05D005752 ORTHO05D006959 6.1e-74 281.2 202 75.7
Manes.15G187700 Manihot esculenta HOM05D005752 ORTHO05D006959 1.0e-73 280.4 207 76.8
Prupe.1G588300 Prunus persica HOM05D005752 ORTHO05D006959 4.0e-73 278.5 203 74.9
Gohir.D07G067500 Gossypium hirsutum HOM05D005752 ORTHO05D006959 1.5e-72 276.6 197 78.2
Gorai.001G071100 Gossypium raimondii HOM05D005752 ORTHO05D006959 1.5e-72 276.6 197 78.2
FvH4_5g27080 Fragaria vesca HOM05D005752 ORTHO05D006959 2.0e-72 276.2 206 74.3
TWI81G0144 Tripterygium wilfordii HOM05D005752 ORTHO05D006959 2.0e-72 276.2 229 69.9
CSS0040154 Camellia sinensis var. sinensis HOM05D005752 ORTHO05D006959 2.8e-71 272.3 205 75.6
Actinidia06837 Actinidia chinensis HOM05D005752 ORTHO05D006959 1.6e-69 266.5 205 74.6
Migut.O00287 Erythranthe guttata HOM05D005752 ORTHO05D006959 2.0e-69 266.2 200 75.5
Potri.004G066700 Populus trichocarpa HOM05D005752 ORTHO05D006959 3.5e-69 265.4 210 75.2
PSO063G6484 Papaver somniferum HOM05D005752 ORTHO05D006959 4.5e-69 265.0 203 73.4
PSO782G4127 Papaver somniferum HOM05D005752 ORTHO05D006959 4.5e-69 265.0 203 73.4
ECA232G1540 Erigeron canadensis HOM05D005752 ORTHO05D006959 3.8e-68 261.9 194 75.8
Lj2g0008613 Lotus japonicus HOM05D005752 ORTHO05D006959 1.1e-67 260.4 221 68.8
THA.LOC104812187 Tarenaya hassleriana HOM05D005752 ORTHO05D006959 1.5e-67 260.0 219 69.4
Oeu038392.3 Olea europaea HOM05D005752 ORTHO05D006959 5.5e-67 258.1 205 72.7
AT1G73350 Arabidopsis thaliana HOM05D005752 ORTHO05D006959 9.4e-67 257.3 214 69.6
Sc10g0008680 Simmondsia chinensis HOM05D005752 ORTHO05D006959 1.2e-66 256.9 206 72.8
ATR0124G026 Amborella trichopoda HOM05D005752 ORTHO05D006959 1.6e-66 256.5 207 70.5
Carub.0002s2009 Capsella rubella HOM05D005752 ORTHO05D006959 1.6e-66 256.5 221 67.4
EL10Ac8g19469 Beta vulgaris HOM05D005752 ORTHO05D006959 6.1e-66 254.6 224 67.4
Glyma.09G161000 Glycine max HOM05D005752 ORTHO05D006959 1.4e-65 253.4 213 69.0
CAN.G65.61 Capsicum annuum HOM05D005752 ORTHO05D006959 3.0e-65 252.3 211 69.2
Glyma.16G210400 Glycine max HOM05D005752 ORTHO05D006959 1.2e-64 250.4 220 67.7
Os02g0637900 Oryza sativa ssp. japonica HOM05D005752 ORTHO05D006959 1.2e-64 250.4 216 67.6
DCAR_023237 Daucus carota HOM05D005752 ORTHO05D006959 2.6e-64 249.2 215 68.4
Zm00001eb185640 Zea mays HOM05D005752 ORTHO05D006959 2.8e-63 245.7 210 68.6
BcaB03g15707 Brassica carinata HOM05D005752 ORTHO05D006959 3.1e-62 242.3 214 67.8
VMungo0464G0712 Vigna mungo HOM05D005752 ORTHO05D006959 5.4e-62 241.5 241 61.8
Lsat_1_v5_gn_6_23301 Lactuca sativa HOM05D005752 ORTHO05D006959 7.0e-62 241.1 191 71.7
BcaB03g15052 Brassica carinata HOM05D005752 ORTHO05D006959 9.1e-62 240.7 218 65.6
BraA07t30622Z Brassica rapa HOM05D005752 ORTHO05D006959 9.1e-62 240.7 224 64.7
Sp5g28280 Schrenkiella parvula HOM05D005752 ORTHO05D006959 1.6e-61 240.0 231 63.6
Nitab4.5_0005315g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 3.5e-61 238.8 202 68.8
arahy.Tifrunner.gnm1.ann1.CL4QH0 Arachis hypogaea HOM05D005752 ORTHO05D006959 2.2e-60 236.1 247 60.3
arahy.Tifrunner.gnm1.ann1.LY2Y4A Arachis hypogaea HOM05D005752 ORTHO05D006959 2.9e-60 235.7 264 57.6
BraA07t31481Z Brassica rapa HOM05D005752 ORTHO05D006959 3.8e-60 235.3 221 63.8
Nitab4.5_0009307g0030 Nicotiana tabacum HOM05D005752 ORTHO05D006959 3.2e-59 232.3 204 65.2
A07p39320 Brassica napus HOM05D005752 ORTHO05D006959 7.2e-59 231.1 224 62.1
Nitab4.5_0008182g0060 Nicotiana tabacum HOM05D005752 ORTHO05D006959 9.4e-59 230.7 204 64.7
SEGI_37918 Sequoiadendron giganteum HOM05D005752 ORTHO05D006959 1.2e-58 230.3 217 63.1
Cfa017810 Carpinus fangiana HOM05D005752 ORTHO05D006959 3.6e-58 228.8 207 64.7
A07p29840 Brassica napus HOM05D005752 ORTHO05D006959 6.1e-58 228.0 258 56.6
Hund06741 Selenicereus undatus HOM05D005752 ORTHO05D006959 8.0e-58 227.6 210 62.9
CDE08G1652 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 4.0e-57 225.3 236 58.5
ClCG04G012440 Citrullus lanatus HOM05D005752 ORTHO05D006959 1.3e-55 220.3 202 64.9
Thhalv10019162m.g Eutrema salsugineum HOM05D005752 ORTHO05D006959 1.7e-55 219.9 219 60.3
Thecc.03G073300 Theobroma cacao HOM05D005752 ORTHO05D006959 1.7e-55 219.9 163 76.7
Lj5C168T8 Lonicera japonica HOM05D005752 ORTHO05D006959 4.9e-55 218.4 201 65.7
Pp3c25_5680 Physcomitrium patens HOM05D005752 ORTHO05D006959 6.3e-55 218.0 197 65.0
Dinv04371 Davidia involucrata HOM05D005752 ORTHO05D006959 3.8e-52 208.8 161 74.5
Pp3c16_8600 Physcomitrium patens HOM05D005752 ORTHO05D006959 8.6e-52 207.6 197 62.4
Nitab4.5_0000477g0100 Nicotiana tabacum HOM05D005752 ORTHO05D006959 1.6e-50 203.4 202 63.4
GSVIVG01024240001 Vitis vinifera HOM05D005752 ORTHO05D006959 4.7e-50 201.8 170 71.2
unitig_0.g1238 Utricularia gibba HOM05D000376 ORTHO05D000237 8.0e-50 201.1 197 59.9
PGSC0003DMG400015277 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.4e-49 200.3 207 60.4
Ah.14g085830 Amaranthus hybridus HOM05D005752 ORTHO05D006959 2.2e-47 193.0 171 66.7
Eucgr.G00948 Eucalyptus grandis HOM05D005752 ORTHO05D006959 2.9e-47 192.6 162 69.1
CARHR066400 Cardamine hirsuta HOM05D005752 ORTHO05D006959 8.3e-47 191.0 161 69.6
MSTRG.23218 Avicennia marina HOM05D005752 ORTHO05D006959 1.8e-46 189.9 159 71.7
AL2G33120 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 4.1e-46 188.7 181 62.4
C06p34060 Brassica napus HOM05D005752 ORTHO05D006959 5.4e-46 188.3 173 65.3
Eucgr.J01173 Eucalyptus grandis HOM05D005752 ORTHO05D006959 5.9e-45 184.9 158 67.1
SMO232G0035 Selaginella moellendorffii HOM05D005752 ORTHO05D006959 1.0e-44 184.1 194 58.8
AUR62040639 Chenopodium quinoa HOM05D005752 ORTHO05D006959 6.6e-44 181.4 92 98.9
CsaV3_1G005270 Cucumis sativus L. HOM05D005752 ORTHO05D006959 4.3e-43 178.7 92 97.8
Lalb_Chr14g0370131 Lupinus albus HOM05D005752 ORTHO05D006959 4.3e-43 178.7 92 97.8
Nn4g25057 Nelumbo nucifera HOM05D005752 ORTHO05D006959 4.3e-43 178.7 114 81.6
FAN18G3658 Fragaria x ananassa HOM05D005752 ORTHO05D006959 5.6e-43 178.3 92 96.7
HPP92_021122 Vanilla planifolia HOM05D005752 ORTHO05D006959 5.6e-43 178.3 92 96.7
RcHm_v2.0_Chr7g0218081 Rosa chinensis HOM05D005752 ORTHO05D006959 7.3e-43 177.9 92 95.7
FAN08G2690 Fragaria x ananassa HOM05D005752 ORTHO05D006959 1.2e-42 177.2 92 95.7
CDE04G3451 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 2.1e-42 176.4 97 91.8
Phvul.004G136400 Phaseolus vulgaris HOM05D005752 ORTHO05D006959 2.1e-42 176.4 181 62.4
HanXRQChr04g0126291 Helianthus annuus HOM05D005752 ORTHO05D006959 2.8e-42 176.0 92 95.7
Aa31LG4G3620 Aethionema arabicum HOM05D005752 ORTHO05D006959 2.3e-41 172.9 218 52.3
Mapoly0033s0045 Marchantia polymorpha HOM05D005752 ORTHO05D006959 1.2e-40 170.6 161 61.5
Cc00_g01570 Coffea canephora HOM05D005752 ORTHO05D006959 2.0e-40 169.9 93 93.5
QL10p035764 Quercus lobata HOM05D005752 ORTHO05D006959 7.5e-40 167.9 267 46.1
BcaC08g45648 Brassica carinata HOM05D005752 ORTHO05D006959 8.3e-39 164.5 92 90.2
BolC6t38521H Brassica oleracea HOM05D005752 ORTHO05D006959 8.3e-39 164.5 92 90.2
QL12p037498 Quercus lobata HOM05D005752 ORTHO05D006959 1.9e-38 163.3 272 44.1
Sabra04G0044500 Salix brachista HOM05D005752 ORTHO05D006959 1.2e-37 160.6 95 92.6
PGSC0003DMG400026968 Solanum tuberosum HOM05D005752 ORTHO05D006959 2.7e-37 159.5 221 50.7
SalBow5G5648 Salvia bowleyana HOM05D005752 ORTHO05D006959 1.0e-36 157.5 191 52.9
MBI03_g11902_MAGBIO Magnolia biondii HOM05D005752 ORTHO05D006959 1.1e-35 154.1 206 50.0
CBR_g54189 Chara braunii HOM05D005752 ORTHO05D006959 3.3e-35 152.5 142 61.3
MELO3C001966.2 Cucumis melo HOM05D005752 ORTHO05D006959 4.3e-35 152.1 301 41.2
Medtr6g068990 Medicago truncatula HOM05D005752 ORTHO05D006959 1.4e-33 147.1 186 53.8
Ca_25284_v3 Cicer arietinum L. HOM05D005752 ORTHO05D006959 5.2e-33 145.2 238 45.4
Rhsim08G0128600 Rhododendron simsii HOM05D005752 ORTHO05D006959 4.4e-32 142.1 285 41.4
CAN.G861.19 Capsicum annuum HOM05D005752 ORTHO05D006959 1.7e-31 140.2 206 48.1
AUR62041602 Chenopodium quinoa HOM05D005752 ORTHO05D006959 1.3e-28 130.6 100 74.0
Psat1g118960 Pisum sativum HOM05D005752 ORTHO05D006959 3.9e-28 129.0 143 57.3
COL.COLO4_38544 Corchorus olitorius HOM05D005752 ORTHO05D006959 9.5e-27 124.4 107 69.2
Solyc06g150131.1 Solanum lycopersicum HOM05D005752 ORTHO05D006959 4.4e-24 115.5 166 48.8
MD06G1000100 Malus domestica HOM05D005752 ORTHO05D006959 9.9e-24 114.4 63 88.9
AagrBONN_evm.TU.Sc2ySwM_368.1654 Anthoceros agrestis HOM05D005752 ORTHO05D006959 2.2e-23 113.2 194 42.8
Cpa.g.sc628.6 Carica papaya HOM05D005752 ORTHO05D006959 1.4e-22 110.5 157 51.6
QL10p031508 Quercus lobata HOM05D005752 ORTHO05D006959 1.9e-22 110.2 156 49.4
vmacro17761 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 1.2e-21 107.5 176 42.0
BcaC08g46759 Brassica carinata HOM05D005752 ORTHO05D006959 2.3e-20 103.2 282 35.1
FAN13G1309 Fragaria x ananassa HOM05D005752 ORTHO05D006959 3.0e-20 102.8 114 56.1
Sopen03g029760 Solanum pennellii HOM05D005752 ORTHO05D006959 4.3e-19 99.0 52 94.2
C06p47550 Brassica napus HOM05D005752 ORTHO05D006959 9.6e-19 97.8 151 45.7
BolC6t39793H Brassica oleracea HOM05D005752 ORTHO05D006959 9.6e-19 97.8 151 45.7
BcaC08g45649 Brassica carinata HOM05D005752 ORTHO05D006959 4.0e-17 92.4 121 52.1
SHI05872 Sapria himalayana HOM05D005752 ORTHO05D006959 7.6e-16 88.2 99 60.6
Sopen06g028430 Solanum pennellii HOM05D005752 ORTHO05D006959 7.1e-14 81.6 104 51.9
GSVIVG01024241001 Vitis vinifera HOM05D005752 ORTHO05D006959 1.6e-13 80.5 40 95.0
HanXRQChr04g0126301 Helianthus annuus HOM05D005752 ORTHO05D006959 3.5e-13 79.3 54 75.9
Lalb_Chr14g0370141 Lupinus albus HOM05D005752 ORTHO05D006959 5.1e-12 75.5 130 42.3
CDE04G3305 Ceratophyllum demersum HOM05D005752 ORTHO05D006959 6.6e-12 75.1 169 33.7
AL2G33130 Arabidopsis lyrata HOM05D005752 ORTHO05D006959 3.3e-11 72.8 41 87.8
CsaV3_1G005260 Cucumis sativus L. HOM05D005752 ORTHO05D006959 1.3e-10 70.9 73 56.2
vmacro17785 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 9.0e-09 64.7 42 81.0
SGA_v2.0_scaffold21G09651 Striga asiatica HOM05D005752 ORTHO05D006959 2.0e-08 63.5 40 75.0
PGSC0003DMG400035697 Solanum tuberosum HOM05D005752 ORTHO05D006959 1.3e-07 60.8 35 88.6
vmacro17760 Vaccinium macrocarpon HOM05D005752 ORTHO05D006959 5.4e-06 55.5 85 48.2


User provided reference genes

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