Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Atru.chr9.2610 Acer truncatum HOM05D000087 ORTHO05D005735 4.3e-281 970.7 496 100.0
Ciclev10018581m.g Citrus clementina HOM05D000087 ORTHO05D005735 1.6e-211 739.6 491 78.0
Prupe.5G137300 Prunus persica HOM05D000087 ORTHO05D005735 1.1e-201 706.8 507 72.8
CiPaw.11G106200 Carya illinoinensis HOM05D000087 ORTHO05D005735 4.1e-199 698.4 505 72.7
FAN04G3195 Fragaria x ananassa HOM05D000087 ORTHO05D005735 4.2e-196 688.3 496 72.4
RcHm_v2.0_Chr7g0188131 Rosa chinensis HOM05D000087 ORTHO05D005735 1.2e-195 686.8 496 72.2
FvH4_5g10170 Fragaria vesca HOM05D000087 ORTHO05D005735 1.6e-195 686.4 496 72.0
FAN18G4270 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.6e-195 686.4 496 72.0
Duzib068G0232 Durio zibethinus HOM05D000087 ORTHO05D005735 6.1e-195 684.5 504 69.8
MD06G1127500 Malus domestica HOM05D000087 ORTHO05D005735 2.3e-194 682.6 507 71.0
Cfa011874 Carpinus fangiana HOM05D000087 ORTHO05D005735 1.2e-193 680.2 487 73.5
QL02p026653 Quercus lobata HOM05D000087 ORTHO05D005735 1.9e-188 662.9 490 72.0
Manes.17G015000 Manihot esculenta HOM05D000087 ORTHO05D005735 9.5e-188 660.6 486 71.6
FAN08G3226 Fragaria x ananassa HOM05D000087 ORTHO05D005735 2.1e-187 659.4 496 70.0
TWI81G0850 Tripterygium wilfordii HOM05D000087 ORTHO05D005735 4.7e-187 658.3 505 68.9
Gohir.A08G107500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 8.0e-187 657.5 504 68.5
Gorai.004G127300 Gossypium raimondii HOM05D000087 ORTHO05D005735 2.3e-186 656.0 504 68.3
TAR629G0355 Trochodendron aralioides HOM05D000087 ORTHO05D005735 9.8e-185 650.6 514 68.5
GSVIVG01019707001 Vitis vinifera HOM05D000087 ORTHO05D005735 1.3e-184 650.2 493 71.2
Sabra16G0307100 Salix brachista HOM05D000087 ORTHO05D005735 1.1e-183 647.1 506 68.8
CANSAT64G2851 Cannabis sativa HOM05D000087 ORTHO05D005735 3.1e-183 645.6 490 68.6
Thecc.03G213700 Theobroma cacao HOM05D000087 ORTHO05D005735 5.0e-181 638.3 498 67.3
Dinv11465 Davidia involucrata HOM05D000087 ORTHO05D005735 2.0e-174 616.3 508 65.7
Gohir.D08G120500 Gossypium hirsutum HOM05D000087 ORTHO05D005735 4.6e-174 615.1 490 65.7
Haze_09232 Corylus avellana HOM05D000087 ORTHO05D005735 3.0e-173 612.5 452 72.8
CsaV3_5G001350 Cucumis sativus L. HOM05D000087 ORTHO05D005735 1.4e-170 603.6 506 64.4
Lj2C147G10 Lonicera japonica HOM05D000087 ORTHO05D005735 1.7e-168 596.7 508 65.2
ClCG01G001230 Citrullus lanatus HOM05D000087 ORTHO05D005735 3.3e-164 582.4 561 58.6
Sed0004639 Sechium edule HOM05D000087 ORTHO05D005735 4.3e-164 582.0 506 62.8
MELO3C005812.2 Cucumis melo HOM05D000087 ORTHO05D005735 9.5e-164 580.9 545 60.0
Glyma.06G180700 Glycine max HOM05D000087 ORTHO05D005735 9.5e-164 580.9 496 62.7
Lalb_Chr14g0362591 Lupinus albus HOM05D000087 ORTHO05D005735 1.8e-162 576.6 493 62.5
PSO063G0654 Papaver somniferum HOM05D000087 ORTHO05D005735 2.3e-162 576.2 510 62.2
Lj6g0001276 Lotus japonicus HOM05D000087 ORTHO05D005735 3.1e-162 575.9 489 62.4
Eucgr.D02539 Eucalyptus grandis HOM05D000087 ORTHO05D005735 2.0e-161 573.2 506 61.7
VMungo1127G0184 Vigna mungo HOM05D000087 ORTHO05D005735 5.8e-161 571.6 505 61.4
Psat5g111000 Pisum sativum HOM05D000087 ORTHO05D005735 7.5e-161 571.2 491 62.1
PSO782G2195 Papaver somniferum HOM05D000087 ORTHO05D005735 1.4e-159 567.0 510 61.8
Sp7g37630 Schrenkiella parvula HOM05D000087 ORTHO05D005735 3.2e-159 565.8 491 61.3
Phvul.011G167550 Phaseolus vulgaris HOM05D000087 ORTHO05D005735 2.1e-158 563.1 490 61.6
MSTRG.22476 Avicennia marina HOM05D000087 ORTHO05D005735 3.0e-157 559.3 495 59.6
AL7G10010 Arabidopsis lyrata HOM05D000087 ORTHO05D005735 8.6e-157 557.8 490 59.8
C01p21480 Brassica napus HOM05D000087 ORTHO05D005735 4.3e-156 555.4 486 59.9
BolC1t02068H Brassica oleracea HOM05D000087 ORTHO05D005735 4.3e-156 555.4 486 59.9
AT4G38120 Arabidopsis thaliana HOM05D000087 ORTHO05D005735 2.8e-155 552.7 490 59.4
MD14G1143100 Malus domestica HOM05D000087 ORTHO05D005735 3.6e-155 552.4 506 60.9
MBI04_g04806_MAGBIO Magnolia biondii HOM05D000087 ORTHO05D005735 2.3e-154 549.7 517 59.4
HanXRQChr01g0016041 Helianthus annuus HOM05D000087 ORTHO05D005735 4.0e-154 548.9 489 62.0
Cc08_g17160 Coffea canephora HOM05D000087 ORTHO05D005735 1.5e-153 547.0 502 59.4
ECA246G1365 Erigeron canadensis HOM05D000087 ORTHO05D005735 1.5e-153 547.0 490 62.0
vmacro08519 Vaccinium macrocarpon HOM05D000087 ORTHO05D005735 5.8e-153 545.0 608 53.3
Carub.0007s0001 Capsella rubella HOM05D000087 ORTHO05D005735 7.6e-153 544.7 490 58.8
Actinidia22240 Actinidia chinensis HOM05D000087 ORTHO05D005735 1.7e-152 543.5 506 60.3
Nn3g18737 Nelumbo nucifera HOM05D000087 ORTHO05D005735 2.9e-152 542.7 514 59.3
THA.LOC104806594 Tarenaya hassleriana HOM05D000087 ORTHO05D005735 1.4e-151 540.4 488 60.9
Rhsim02G0255700 Rhododendron simsii HOM05D000087 ORTHO05D005735 2.4e-151 539.7 467 63.0
Migut.H02249 Erythranthe guttata HOM05D000087 ORTHO05D005735 9.2e-151 537.7 500 57.4
A01p17150 Brassica napus HOM05D000087 ORTHO05D005735 6.0e-150 535.0 486 58.4
BraA01t01671Z Brassica rapa HOM05D000087 ORTHO05D005735 6.0e-150 535.0 486 58.4
Sc01g0010950 Simmondsia chinensis HOM05D000087 ORTHO05D005735 2.5e-148 529.6 503 58.4
Lsat_1_v5_gn_3_13301 Lactuca sativa HOM05D000087 ORTHO05D005735 5.6e-148 528.5 491 59.5
CARHR143600 Cardamine hirsuta HOM05D000087 ORTHO05D005735 8.1e-147 524.6 446 61.9
Peaxi162Scf00046g00228 Petunia axillaris HOM05D000087 ORTHO05D005735 1.5e-145 520.4 505 58.0
Sopen07g004380 Solanum pennellii HOM05D000087 ORTHO05D005735 4.9e-144 515.4 498 56.2
Solyc07g008450.3 Solanum lycopersicum HOM05D000087 ORTHO05D005735 8.4e-144 514.6 503 56.3
CAN.G1548.2 Capsicum annuum HOM05D000087 ORTHO05D005735 6.0e-142 508.4 498 55.8
Hund03336 Selenicereus undatus HOM05D000087 ORTHO05D005735 1.0e-141 507.7 492 56.9
Medtr3g080640 Medicago truncatula HOM05D000087 ORTHO05D005735 1.7e-141 506.9 448 61.2
AUR62009145 Chenopodium quinoa HOM05D000087 ORTHO05D005735 6.2e-139 498.4 493 56.0
AUR62039113 Chenopodium quinoa HOM05D000087 ORTHO05D005735 8.1e-139 498.0 493 55.6
ATR0579G142 Amborella trichopoda HOM05D000087 ORTHO05D005735 1.2e-137 494.2 515 53.2
EL10Ac2g03880 Beta vulgaris HOM05D000087 ORTHO05D005735 1.2e-137 494.2 504 54.8
SGA_v2.0_scaffold123G33449 Striga asiatica HOM05D000087 ORTHO05D005735 2.2e-136 490.0 627 46.9
arahy.Tifrunner.gnm1.ann1.0XGN9Z Arachis hypogaea HOM05D000087 ORTHO05D005735 8.4e-136 488.0 450 59.8
Nitab4.5_0000491g0190 Nicotiana tabacum HOM05D000087 ORTHO05D005735 4.8e-131 472.2 498 54.2
PGR031G2531 Punica granatum HOM05D000087 ORTHO05D005735 9.0e-130 468.0 488 54.3
Aa31LG6G16960 Aethionema arabicum HOM05D000087 ORTHO05D005735 4.5e-129 465.7 489 54.4
HPP92_008913 Vanilla planifolia HOM05D000087 ORTHO05D005735 9.9e-129 464.5 509 51.5
Nitab4.5_0007502g0010 Nicotiana tabacum HOM05D000087 ORTHO05D005735 4.3e-124 449.1 501 52.3
DCAR_010123 Daucus carota HOM05D000087 ORTHO05D005735 1.2e-121 441.0 421 58.0
Thhalv10024269m.g Eutrema salsugineum HOM05D000087 ORTHO05D005735 3.2e-119 433.0 487 50.3
Zm00001eb416210 Zea mays HOM05D000087 ORTHO05D005735 1.5e-116 424.1 493 48.7
Os08g0152900 Oryza sativa ssp. japonica HOM05D000087 ORTHO05D005735 1.3e-115 421.0 483 49.5
Mapoly0043s0141 Marchantia polymorpha HOM05D000087 ORTHO05D005735 2.4e-106 390.2 463 47.1
arahy.Tifrunner.gnm1.ann1.DH86LW Arachis hypogaea HOM05D000087 ORTHO05D005735 1.5e-97 360.9 468 47.9
SMO367G1062 Selaginella moellendorffii HOM05D000087 ORTHO05D005735 8.2e-91 338.6 493 42.4
SEGI_15816 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 2.4e-90 337.0 360 52.8
Pp3c3_37190 Physcomitrium patens HOM05D000087 ORTHO05D005735 1.4e-85 321.2 495 39.4
CDE02G0276 Ceratophyllum demersum HOM05D000087 ORTHO05D005735 1.4e-82 311.2 303 59.1
FAN18G0494 Fragaria x ananassa HOM05D000087 ORTHO05D005735 5.0e-80 302.8 366 52.5
Potri.001G454200 Populus trichocarpa HOM05D000087 ORTHO05D005735 4.1e-66 256.5 190 68.9
CBR_g3175 Chara braunii HOM05D000087 ORTHO05D005735 1.1e-63 248.4 445 35.7
Aqoxy5G04397 Aquilegia oxysepala HOM05D000087 ORTHO05D005735 7.5e-60 235.7 203 62.6
COL.COLO4_10863 Corchorus olitorius HOM05D000087 ORTHO05D005735 2.3e-53 214.2 495 33.5
CSS0034403 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.0e-48 198.7 233 52.4
CSS0007327 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 9.5e-47 192.2 243 49.0
Cpa.g.sc363.3 Carica papaya HOM05D000087 ORTHO05D005735 3.4e-44 183.7 120 78.3
Duzib084G0823 Durio zibethinus HOM05D000087 ORTHO05D005735 3.4e-44 183.7 122 74.6
MCO07G377 Micromonas commoda HOM05D000087 ORTHO05D005735 5.1e-40 169.9 378 29.6
CARHR293880 Cardamine hirsuta HOM05D000087 ORTHO05D005735 3.8e-35 153.7 123 61.0
HPP92_028198 Vanilla planifolia HOM05D000087 ORTHO05D005735 1.6e-33 148.3 206 42.2
HPP92_028197 Vanilla planifolia HOM05D000087 ORTHO05D005735 2.0e-28 131.3 115 60.9
CARHR293870 Cardamine hirsuta HOM05D000087 ORTHO05D005735 4.4e-28 130.2 112 63.4
Oeu053260.1 Olea europaea HOM05D000087 ORTHO05D010194 4.4e-28 130.2 114 61.4
FAN13G3301 Fragaria x ananassa HOM05D000087 ORTHO05D005735 1.3e-27 128.6 84 76.2
Cre03.g166600 Chlamydomonas reinhardtii HOM05D000087 ORTHO05D005735 4.6e-25 120.2 531 23.5
CARHR291390 Cardamine hirsuta HOM05D000087 ORTHO05D005735 5.6e-23 113.2 72 72.2
CSS0033050 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 2.1e-14 84.7 76 59.2
SEGI_26704 Sequoiadendron giganteum HOM05D000087 ORTHO05D005735 1.1e-13 82.4 82 51.2
AUR62009162 Chenopodium quinoa HOM05D000087 ORTHO05D005735 1.4e-10 72.0 137 40.9
Rhsim02G0255800 Rhododendron simsii HOM05D000087 ORTHO05D005735 1.0e-08 65.9 51 64.7
CSS0034676 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 6.7e-08 63.2 91 44.0
CSS0050207 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 1.5e-07 62.0 40 75.0
Medtr3g080660 Medicago truncatula HOM05D000087 ORTHO05D005735 1.9e-07 61.6 49 67.3
Hma1.2p1_0198F.1_g085360 Hydrangea macrophylla HOM05D000087 ORTHO05D005735 4.3e-07 60.5 40 72.5
CSS0049190 Camellia sinensis var. sinensis HOM05D000087 ORTHO05D005735 4.8e-06 57.0 76 46.1


User provided reference genes

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